Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G29310 134 / 3e-34 calmodulin-binding protein-related (.1) AT5G62390 71 / 3e-13 ATBAG7 BCL-2-associated athanogene 7 (.1) AT2G46240 58 / 8e-09 ATBAG6, BAG6 ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 6, BCL-2-associated athanogene 6 (.1) AT1G12060 51 / 3e-07 ATBAG5 BCL-2-associated athanogene 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026469 [exp] 707 / 0 AT3G29310 140 / 3e-36 calmodulin-binding protein-related (.1) Lus10031724 [exp] 72 / 3e-13 AT5G62390 334 / 1e-111 BCL-2-associated athanogene 7 (.1) Lus10031147 [exp] 71 / 4e-13 AT5G62390 331 / 3e-110 BCL-2-associated athanogene 7 (.1) Lus10012648 [exp] 68 / 1e-11 AT2G46240 157 / 1e-38 ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 6, BCL-2-associated athanogene 6 (.1) Lus10010133 [exp] 62 / 1e-09 AT2G46240 67 / 5e-12 ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 6, BCL-2-associated athanogene 6 (.1) Lus10003798 [exp] 52 / 1e-06 AT1G12050 667 / 0.0 fumarylacetoacetase, putative (.1) Lus10010486 [exp] 50 / 1e-06 AT1G12060 201 / 6e-65 BCL-2-associated athanogene 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G091100 [exp] 226 / 5e-69 AT3G29310 141 / 2e-36 calmodulin-binding protein-related (.1) Potri.012G126000 [exp] 71 / 5e-13 AT5G62390 108 / 7e-26 BCL-2-associated athanogene 7 (.1) Potri.015G126800 [exp] 68 / 3e-12 AT5G62390 311 / 1e-102 BCL-2-associated athanogene 7 (.1) Potri.002G166300 [exp] 66 / 3e-11 AT2G46240 140 / 2e-33 ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 6, BCL-2-associated athanogene 6 (.1) Potri.004G124301 [exp] 56 / 1e-09 AT3G29310 45 / 3e-06 calmodulin-binding protein-related (.1) Potri.003G167500 [exp] 47 / 2e-05 AT1G12060 88 / 1e-19 BCL-2-associated athanogene 5 (.1) Potri.016G014900 [exp] 45 / 2e-05 AT1G12060 159 / 6e-49 BCL-2-associated athanogene 5 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038064 pacid=23163840 polypeptide=Lus10038064 locus=Lus10038064.g ID=Lus10038064.BGIv1.0 annot-version=v1.0 ATGGCGACTCACAGTCACCACCACAATCGACATTGTCCAAACCCTGTCTCCGCCATCCAAGCTTCTTCCTTCACTTCTGGTGGCTGCTGCTGCTGCTGCT GCTGCCTGAAGAACTCCTCTCCACACTCAGTCAGGGAATCAGCAGTTGACCCATATCTCGTCCGGCCCATTATAGATCTCCTCTACCAACAACAGTACAA TCAGCAGCACCAATGTTTTGATTCGTATTGTTCCCGAGGTAGCAGAGCTTGTAGTCTTAATGATCGCATCCAGCACCCTCAATTTCAATCTCAAACCTTG CTTTCTCGTGTGTTGCCTCACAACGAGCCAACCCAGTTCCTTGTCTCATCCCTGGTCCAAAGACTTGATGCTTTGGAGTCCTCTTTGTGCCCAGTATCTT CCACTTCTGTGGATGAGTACCCACTAAGAAGTGCTGCTGCCCGGGTGATTCAAGCCCATTTCCGTGCCTTTCTTGTTCGTAGATCAAGAAACCTCAGACA ACTCAAAGTCCTAGCATCTCTCAAATCTGCTTTCAACTCTCTCAGGTCTTCTATTTCAGGGAAGACTAGTTTCAATTTTGAGCTTGTCTCTGAAAAAGCC ATGGACTTGCTGCTCAAGGTTGATTCTATTCAGGGTGGTGATCCCATGATCAGAGATGCAAAAAGGTCAATGAGCAACGATCTGGTGAGCTTTCTTGAAC TTGTCGATGGATTTGTATCTAGGAAGAGGGCAAATGTATATAAATCAACTCGAAAGATAGGGCAAGTTGGCTGTGGCAAAAAACCTAGTGCTTGGAATGT GAGTAAAGGCTATGGAGATGCAGGTAAGAATAAAAAGGAAATAGTAGAGAAGTTGAGGCAGAGGGTCGATAAGATCAATGATGGGTTGTCTAGGATTAAT GGTAATGGTGAGGAAGATGTGGAGATCGAAGGGTATCAATACGAGTTGATTGCTGAGGATGATGCAATGGAGGAAGAAGAGGGTAACAAGGTTATTGGTA ACCCCCAAAACAGTGGTTGTGTTCAACCTCCCAAAGTAAAGAAGAAAAGCGTAAGCTTTGCTGATGATGAGAATGTTTATAAGGTTTTTGTCAAATCCAC TACAAAAGGTGCTACTTCCTGTTCTGCTAAAGATGATCGTGTTATCATAGAAGATTGTTCTGATGATGATGATGATACCTCTGTGCTTGCGGCTGATAAT GAGAAAGAAGAGGTTCAGGCCGGTGATGGGAGGTTCGTCACATGGAACTGTAGGAATAGTGTGAAGCCTAGTGTTGGTTGGCAGGAAGAAGATGGAAGTT TTGTTTTCTCTGCTCCAATTCCTGCGAAGATGGAGTCGAGGGCGGATGCTGACATATGA
AA sequence Show only first row Show all	>Lus10038064 pacid=23163840 polypeptide=Lus10038064 locus=Lus10038064.g ID=Lus10038064.BGIv1.0 annot-version=v1.0 MATHSHHHNRHCPNPVSAIQASSFTSGGCCCCCCCLKNSSPHSVRESAVDPYLVRPIIDLLYQQQYNQQHQCFDSYCSRGSRACSLNDRIQHPQFQSQTL LSRVLPHNEPTQFLVSSLVQRLDALESSLCPVSSTSVDEYPLRSAAARVIQAHFRAFLVRRSRNLRQLKVLASLKSAFNSLRSSISGKTSFNFELVSEKA MDLLLKVDSIQGGDPMIRDAKRSMSNDLVSFLELVDGFVSRKRANVYKSTRKIGQVGCGKKPSAWNVSKGYGDAGKNKKEIVEKLRQRVDKINDGLSRIN GNGEEDVEIEGYQYELIAEDDAMEEEEGNKVIGNPQNSGCVQPPKVKKKSVSFADDENVYKVFVKSTTKGATSCSAKDDRVIIEDCSDDDDDTSVLAADN EKEEVQAGDGRFVTWNCRNSVKPSVGWQEEDGSFVFSAPIPAKMESRADADI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G29310			calmodulin-binding protein-rel...		Lus10038064 [exp]	0	1
AT1G66250			O-Glycosyl hydrolases family 1...		Lus10002295 [exp]	1.0	0.9210
AT5G57100			Nucleotide/sugar transporter f...		Lus10020017 [exp]	1.7	0.9175
AT1G07820			Histone superfamily protein (....		Lus10015492 [exp]	6.3	0.9206
AT5G06820		SRF2	STRUBBELIG-receptor family 2 (...		Lus10012022 [exp]	11.6	0.8819
AT3G07800			Thymidine kinase (.1)		Lus10012347 [exp]	12.5	0.9089
AT1G26110		DCP5	decapping 5 (.1.2)		Lus10034747 [exp]	13.6	0.8729
AT4G35930			F-box family protein (.1)		Lus10041876 [exp]	15.7	0.9119
AT5G02560		HTA12	histone H2A 12 (.1.2)		Lus10005444 [exp]	16.7	0.9036
AT3G45980		H2B, HTB9	HISTONE H2B, Histone superfami...		Lus10021408 [exp]	19.6	0.9115
AT2G38370			Plant protein of unknown funct...		Lus10025249 [exp]	19.9	0.8922

Compare expression of checked genes

Lus10038064 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.