Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G21482 284 / 1e-93 ATCKX5, CKX7 ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 7 (.1) AT2G41510 189 / 1e-56 ATCKX1, CKX1 cytokinin oxidase/dehydrogenase 1 (.1) AT1G75450 184 / 3e-55 ATCKX6, ATCKX5, CKX5 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) AT5G56970 179 / 3e-53 ATCKX3, CKX3 cytokinin oxidase 3 (.1) AT3G63440 179 / 4e-53 ATCKX6, CKX6, ATCKX7 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) AT4G29740 159 / 7e-46 ATCKX4, CKX4 cytokinin oxidase 4 (.1.2) AT2G19500 156 / 6e-45 ATCKX2, CKX2 cytokinin oxidase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026471 [exp] 441 / 3e-155 AT5G21482 655 / 0.0 ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 7 (.1) Lus10024289 [exp] 196 / 9e-60 AT1G75450 717 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Lus10031188 [exp] 145 / 2e-40 AT5G56970 484 / 1e-167 cytokinin oxidase 3 (.1) Lus10031200 [exp] 141 / 3e-39 AT2G19500 464 / 1e-159 cytokinin oxidase 2 (.1) Lus10003845 [exp] 101 / 5e-25 AT1G75450 578 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Lus10027611 [exp] 70 / 1e-13 AT5G56970 407 / 3e-138 cytokinin oxidase 3 (.1) Lus10042035 [exp] 66 / 2e-12 AT2G41510 367 / 9e-123 cytokinin oxidase/dehydrogenase 1 (.1) Lus10031765 [exp] 66 / 4e-12 AT1G16560 496 / 2e-171 Per1-like family protein (.1.2.3.4) Lus10031778 [exp] 61 / 1e-10 AT5G56970 190 / 2e-56 cytokinin oxidase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G221000 [exp] 295 / 5e-98 AT5G21482 674 / 0.0 ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 7 (.1) Potri.005G232300 [exp] 193 / 1e-58 AT1G75450 802 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Potri.001G020900 [exp] 192 / 2e-58 AT3G63440 800 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Potri.002G030500 [exp] 191 / 6e-58 AT1G75450 785 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Potri.003G203600 [exp] 189 / 3e-57 AT3G63440 799 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Potri.006G047900 [exp] 186 / 5e-56 AT2G41510 772 / 0.0 cytokinin oxidase/dehydrogenase 1 (.1) Potri.016G044100 [exp] 178 / 7e-53 AT2G41510 752 / 0.0 cytokinin oxidase/dehydrogenase 1 (.1) Potri.006G152500 [exp] 165 / 4e-48 AT5G56970 603 / 0.0 cytokinin oxidase 3 (.1) Potri.007G066100 [exp] 127 / 8e-34 AT5G56970 500 / 3e-173 cytokinin oxidase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0277 [flax] [poplar] FAD-oxidase_C PF09265 [flax] [poplar] Cytokin-bind Cytokinin dehydrogenase 1, FAD and cytokinin binding
Representative CDS sequence Show only first row Show all	>Lus10038065 pacid=23163773 polypeptide=Lus10038065 locus=Lus10038065.g ID=Lus10038065.BGIv1.0 annot-version=v1.0 ATGACGACTCCAATTCACGGTGGTCACCAACTTCTTTACTGCCTCGAACTCGCTCTCCACTTCAATCACTCCGATACTTTATCCACAGTTGACTCGGTGG TGAAGAGACTGATTGGAGGGCTGAGGCATATGAAGGGATTCAAGTATGAGGTTGATTTGAGCTACGTGGAGTTTGTAACGAGGGTGAAAAGAGTAGAAGA AGATGCTCGGGCGCATGGGATGTGGGACGCTCCCCACCCTTGGCTTAATTTCTTCGTTTCTAAAACAGACATCGCTCGTTTTGATCGCCTCGTCTTCAAA GGTTTATTACACGATGGCGTCGGTGGGCCCATGCTCGTCTATCCTCTCCTCCGATCCAAGTGGGATAGCAGGAGCTCGGTGGTATTACCAGAGGGGGGAG ACGATATATTCTACATAGTAGCATTGTTGCGGTCCAATCCTCCATATCCAAAGGGGCCATCAGTGGATAAGTTAGTGTCACAAAATGACAAGATAATTCA ATCTTGCATTCAACATGGGCTTGATTTTAAGCTCTACCTTCCTCACTATCAATCCCAACATGACTGGAGACGACACTTTGGAGATCAATGGTCCAAATTT GTCCAACTCAAGCTAGCTTTTGATCCTATGGCCGTCCTTGCACCTGGTCAGAAAATCTTTACGAGGAGGACCAAAAAATAG
AA sequence Show only first row Show all	>Lus10038065 pacid=23163773 polypeptide=Lus10038065 locus=Lus10038065.g ID=Lus10038065.BGIv1.0 annot-version=v1.0 MTTPIHGGHQLLYCLELALHFNHSDTLSTVDSVVKRLIGGLRHMKGFKYEVDLSYVEFVTRVKRVEEDARAHGMWDAPHPWLNFFVSKTDIARFDRLVFK GLLHDGVGGPMLVYPLLRSKWDSRSSVVLPEGGDDIFYIVALLRSNPPYPKGPSVDKLVSQNDKIIQSCIQHGLDFKLYLPHYQSQHDWRRHFGDQWSKF VQLKLAFDPMAVLAPGQKIFTRRTKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G21482		ATCKX5, CKX7	ARABIDOPSIS THALIANA CYTOKININ...		Lus10038065 [exp]	0	1
AT5G21482		ATCKX5, CKX7	ARABIDOPSIS THALIANA CYTOKININ...		Lus10026471 [exp]	1.0	0.9494
AT5G21482		ATCKX5, CKX7	ARABIDOPSIS THALIANA CYTOKININ...		Lus10038066 [exp]	1.4	0.9462
AT4G13010			Oxidoreductase, zinc-binding d...		Lus10038206 [exp]	4.7	0.9181
AT4G34500			Protein kinase superfamily pro...		Lus10040459 [exp]	5.2	0.9138
					Lus10016571 [exp]	7.3	0.9445
AT3G63170			Chalcone-flavanone isomerase f...		Lus10042591 [exp]	11.7	0.8893
AT3G24460			Serinc-domain containing serin...		Lus10017728 [exp]	14.2	0.8481
AT1G72620			alpha/beta-Hydrolases superfam...		Lus10019631 [exp]	16.1	0.9331
AT1G68585			unknown protein		Lus10021686 [exp]	16.1	0.9313
AT5G01090			Concanavalin A-like lectin fam...		Lus10035542 [exp]	17.5	0.8967

Compare expression of checked genes

Lus10038065 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.