Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G21482 261 / 2e-84 ATCKX5, CKX7 ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 7 (.1) AT3G63440 190 / 4e-57 ATCKX6, CKX6, ATCKX7 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) AT2G41510 190 / 5e-57 ATCKX1, CKX1 cytokinin oxidase/dehydrogenase 1 (.1) AT4G29740 174 / 3e-52 ATCKX4, CKX4 cytokinin oxidase 4 (.1.2) AT1G75450 172 / 2e-50 ATCKX6, ATCKX5, CKX5 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) AT5G56970 165 / 9e-48 ATCKX3, CKX3 cytokinin oxidase 3 (.1) AT2G19500 163 / 3e-47 ATCKX2, CKX2 cytokinin oxidase 2 (.1) AT5G06580 43 / 0.0001 FAD-linked oxidases family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026471 [exp] 426 / 1e-148 AT5G21482 655 / 0.0 ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 7 (.1) Lus10005317 [exp] 192 / 5e-59 AT3G63440 536 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Lus10016363 [exp] 189 / 3e-58 AT3G63440 483 / 9e-169 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Lus10039574 [exp] 190 / 1e-57 AT3G63440 544 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Lus10031046 [exp] 186 / 5e-57 AT2G41510 423 / 1e-144 cytokinin oxidase/dehydrogenase 1 (.1) Lus10035433 [exp] 185 / 7e-57 AT2G41510 424 / 8e-146 cytokinin oxidase/dehydrogenase 1 (.1) Lus10018039 [exp] 182 / 7e-56 AT2G41510 435 / 5e-150 cytokinin oxidase/dehydrogenase 1 (.1) Lus10003845 [exp] 171 / 6e-51 AT1G75450 578 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Lus10024289 [exp] 171 / 1e-49 AT1G75450 717 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G221000 [exp] 299 / 2e-99 AT5G21482 674 / 0.0 ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 7 (.1) Potri.003G203600 [exp] 193 / 2e-58 AT3G63440 799 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Potri.001G020900 [exp] 190 / 4e-57 AT3G63440 800 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Potri.002G030500 [exp] 189 / 8e-57 AT1G75450 785 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Potri.016G044100 [exp] 187 / 4e-56 AT2G41510 752 / 0.0 cytokinin oxidase/dehydrogenase 1 (.1) Potri.005G232300 [exp] 187 / 6e-56 AT1G75450 802 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Potri.006G047900 [exp] 184 / 9e-55 AT2G41510 772 / 0.0 cytokinin oxidase/dehydrogenase 1 (.1) Potri.006G152500 [exp] 177 / 1e-52 AT5G56970 603 / 0.0 cytokinin oxidase 3 (.1) Potri.007G066100 [exp] 166 / 4e-48 AT5G56970 500 / 3e-173 cytokinin oxidase 3 (.1) Potri.016G064800 [exp] 40 / 0.0008 AT5G06580 885 / 0.0 FAD-linked oxidases family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0077 [flax] [poplar] FAD_PCMH PF01565 [flax] [poplar] FAD_binding_4 FAD binding domain
Representative CDS sequence Show only first row Show all	>Lus10038066 pacid=23163873 polypeptide=Lus10038066 locus=Lus10038066.g ID=Lus10038066.BGIv1.0 annot-version=v1.0 ATGATGATAGCGTATTTGGAAATGGAACGGTTCAACATCCAAGAAAACGACTCTTCGGAATCCCGACCTGACGACGACGACGGCGTCGATAATAATCAGC TCCTCCCGGTGATTGGACTTCAAGGCTCAATCGACTACTCTTCCTTCTCCACGTTAGCAGCCGGCAAGGACTTCGGTGGCGTGTACTCTTCCAACCCTCT GGCCTTAATCCGCCCTTCCGGCGCCGACGACGTTGCTCGAGTGGTGAAATCCGCATGCCGCTCCTCCAACCTAACGGTGGCGGCAAGAGGCAACGGCCAC TCAATTAACGGACAGGCCATGGCCGACGGCGGAATCGTTCTGGACATGCGGTCTACGGAGGGTAACCACTTCAAGATCCTCCGTATTAACGGGGGGGGCC ATTACGCTGACGTGTCGGGTGGGGCATTATGGGAAGATATTCTTATGCGGTGTGTTTCTGAGTACGGGTTGGCCCCGCGTTCTTGGACCGATTACCTCAG GCTAACAGTTGGCGGCACGCTCTCCAACGCCGGAGTCAGTGGACAAGCTTTCCGTTACGGCCCCCAGTCTTCCAACGTTACAGAGTTGGACGTCGTTACT GGGAAAGGCGACTTCTTGACTTGCTCTCCGACCCAAAACTCGGATCTTTTCTTCGTCGCGCTCGGCCGGATGGGTCAGCTCGGACGTGTGAAAGGTAAGG TGGACAAGGATGGTCTACGCCGAGTTTGA
AA sequence Show only first row Show all	>Lus10038066 pacid=23163873 polypeptide=Lus10038066 locus=Lus10038066.g ID=Lus10038066.BGIv1.0 annot-version=v1.0 MMIAYLEMERFNIQENDSSESRPDDDDGVDNNQLLPVIGLQGSIDYSSFSTLAAGKDFGGVYSSNPLALIRPSGADDVARVVKSACRSSNLTVAARGNGH SINGQAMADGGIVLDMRSTEGNHFKILRINGGGHYADVSGGALWEDILMRCVSEYGLAPRSWTDYLRLTVGGTLSNAGVSGQAFRYGPQSSNVTELDVVT GKGDFLTCSPTQNSDLFFVALGRMGQLGRVKGKVDKDGLRRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G21482		ATCKX5, CKX7	ARABIDOPSIS THALIANA CYTOKININ...		Lus10038066 [exp]	0	1
AT5G21482		ATCKX5, CKX7	ARABIDOPSIS THALIANA CYTOKININ...		Lus10038065 [exp]	1.4	0.9462
AT5G13250			RING finger protein (.1)		Lus10002575 [exp]	2.4	0.9357
AT5G13250			RING finger protein (.1)		Lus10001802 [exp]	2.8	0.9446
AT1G03840	C2H2ZnF	MGP	Magpie, C2H2 and C2HC zinc fin...		Lus10022080 [exp]	3.3	0.9149
AT4G34500			Protein kinase superfamily pro...		Lus10040459 [exp]	12.4	0.8815
AT4G35240			Protein of unknown function (D...		Lus10016004 [exp]	13.4	0.9213
AT2G40070			unknown protein		Lus10030402 [exp]	18.0	0.8665
AT5G55950			Nucleotide/sugar transporter f...		Lus10022563 [exp]	18.0	0.9223
AT3G04810		ATNEK2	NIMA-related kinase 2 (.1.2)		Lus10042632 [exp]	20.2	0.8886
AT2G14740		VSR2;2, BP80-2;...	VACUOLAR SORTING RECEPTOR 3, V...		Lus10012366 [exp]	20.5	0.9208

Compare expression of checked genes

Lus10038066 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.