Plant FIBer expression Database

Lus10038068 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G02180 140 / 4e-41 ferredoxin-related (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G220700
[exp]
262 / 3e-89 AT1G02180 149 / 8e-45 ferredoxin-related (.1)
Potri.014G044500
[exp]
156 / 1e-47 AT1G02180 263 / 3e-89 ferredoxin-related (.1)
Potri.002G136000
[exp]
150 / 5e-45 AT1G02180 263 / 4e-89 ferredoxin-related (.1)
PFAM info
Representative CDS sequence
>Lus10038068 pacid=23163714 polypeptide=Lus10038068 locus=Lus10038068.g ID=Lus10038068.BGIv1.0 annot-version=v1.0
ATGGCCACATTTCTTCTTCTTCTTCTTCTTCTAACCCCGCTTCTCTTCTCCTCCACCTCGGCCAATTTTCAAGAGAAGGTAACCAACAACCCAGCAGATC
AACTTGTTGCATTGATTAACGGCAACCGGACAGCTCACAAGGGATCAGCCCTCTATGACAATTCAGGCCTAGCTTGCGTCGCCTTACAGTACATAAAAGC
ATACCAAGGAGAATGCAGTGATCCCAAGAAGCCTCCTCCTGATACTGAATTTGCTCAAACGTTTGCGCCCAACTGTGGGGTTTCTGCGTCAACCCTCGCT
CCCATCACCGGTAGGTTGCTCGGTTGCCAGACCAAATATGTGCCGCCTTCTCAAGCCTGGTCAAGCATTCTCATGAAGAACAGCAAGAGTTTTGACATAC
TGTATGATAACAACCACACTGAAGTAGGGGCTGCTGTGACCGGAAGCAATGGGGGATCCCCTTACTTCTGGTGTGTACTGTTCAGCAACGGGAAGAGCAA
CAGCAGCTTTGCTGTGGAGGGAGGTGTTGCCAAGATCACAAGGCCTGGTTGCTTCAGTGGTGCCAATGACGTCTGCAGCACTGCTACTACTCATTTGCTC
CGCCACCTTAGCCTCTGGCCTTTTGCAGCAGCAGCAGCAGCAGCCTACTTGTTTGTTGTATAA
AA sequence
>Lus10038068 pacid=23163714 polypeptide=Lus10038068 locus=Lus10038068.g ID=Lus10038068.BGIv1.0 annot-version=v1.0
MATFLLLLLLLTPLLFSSTSANFQEKVTNNPADQLVALINGNRTAHKGSALYDNSGLACVALQYIKAYQGECSDPKKPPPDTEFAQTFAPNCGVSASTLA
PITGRLLGCQTKYVPPSQAWSSILMKNSKSFDILYDNNHTEVGAAVTGSNGGSPYFWCVLFSNGKSNSSFAVEGGVAKITRPGCFSGANDVCSTATTHLL
RHLSLWPFAAAAAAAYLFVV

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G02180 ferredoxin-related (.1) Lus10038068
[exp]
0 1
AT3G15350 Core-2/I-branching beta-1,6-N-... Lus10043324
[exp]
1.4 0.9341
AT4G11090 TBL23 TRICHOME BIREFRINGENCE-LIKE 23... Lus10033950
[exp]
2.4 0.9218
AT3G11700 FLA18 FASCICLIN-like arabinogalactan... Lus10016194
[exp]
2.8 0.9208
AT3G28917 ZF_HD MIF2 mini zinc finger 2 (.1) Lus10015370
[exp]
3.2 0.9186
AT5G15050 Core-2/I-branching beta-1,6-N-... Lus10032189
[exp]
4.2 0.9243
AT5G08200 peptidoglycan-binding LysM dom... Lus10017399
[exp]
5.3 0.9125
AT4G10955 alpha/beta-Hydrolases superfam... Lus10003188
[exp]
6.9 0.9185
AT2G25110 AtSDF2, ATSDL, ... ATSDF2-LIKE, Arabidopsis thali... Lus10019365
[exp]
7.9 0.9052
AT4G34120 CBSX2, CDCP1, L... LOSS OF THE TIMING OF ET AND J... Lus10002834
[exp]
8.7 0.8873
AT1G67410 Exostosin family protein (.1) Lus10015791
[exp]
8.9 0.8906

Lus10038068 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.