Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G21930 1010 / 0 ATHMA8, HMA8, PAA2 ARABIDOPSIS HEAVY METAL ATPASE 8, P-type ATPase of Arabidopsis 2 (.1.2.3) AT4G33520 418 / 1e-131 AtHMAC6, HMA6, PAA1 Arabidopsis thaliana heavy metal ATPase 6, P-type ATP-ase 1 (.1.2.3) AT5G44790 248 / 3e-69 HMA7, RAN1 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) AT1G63440 248 / 5e-69 HMA5 heavy metal atpase 5 (.1) AT4G30110 174 / 1e-44 ATHMA2, HMA2 ARABIDOPSIS HEAVY METAL ATPASE 2, heavy metal atpase 2 (.1) AT2G19110 157 / 3e-39 ATHMA4, HMA4 ARABIDOPSIS HEAVY METAL ATPASE 4, heavy metal atpase 4 (.1) AT4G37270 103 / 2e-22 ATHMA1, HMA1 ARABIDOPSIS THALIANA HEAVY METAL ATPASE 1, heavy metal atpase 1 (.1) AT4G30120 100 / 2e-21 ATHMA3, HMA3 A. THALIANA HEAVY METAL ATPASE 3, heavy metal atpase 3 (.1) AT1G17260 74 / 5e-13 AHA10 autoinhibited H\(+\)-ATPase isoform 10, autoinhibited H(+)-ATPase isoform 10 (.1) AT1G80660 74 / 5e-13 AHA9 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009789 [exp] 568 / 0 AT5G21930 447 / 1e-149 ARABIDOPSIS HEAVY METAL ATPASE 8, P-type ATPase of Arabidopsis 2 (.1.2.3) Lus10023777 [exp] 423 / 1e-133 AT4G33520 1180 / 0.0 Arabidopsis thaliana heavy metal ATPase 6, P-type ATP-ase 1 (.1.2.3) Lus10031273 [exp] 256 / 4e-72 AT1G63440 1040 / 0.0 heavy metal atpase 5 (.1) Lus10008309 [exp] 224 / 5e-61 AT1G63440 1491 / 0.0 heavy metal atpase 5 (.1) Lus10038364 [exp] 221 / 1e-59 AT5G44790 1441 / 0.0 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) Lus10036225 [exp] 219 / 4e-59 AT5G44790 1402 / 0.0 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) Lus10031840 [exp] 189 / 2e-49 AT5G44790 573 / 0.0 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) Lus10006955 [exp] 164 / 3e-41 AT2G19110 1072 / 0.0 ARABIDOPSIS HEAVY METAL ATPASE 4, heavy metal atpase 4 (.1) Lus10025467 [exp] 159 / 9e-40 AT4G30110 1073 / 0.0 ARABIDOPSIS HEAVY METAL ATPASE 2, heavy metal atpase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G047800 [exp] 1132 / 0 AT5G21930 1193 / 0.0 ARABIDOPSIS HEAVY METAL ATPASE 8, P-type ATPase of Arabidopsis 2 (.1.2.3) Potri.003G024000 [exp] 444 / 2e-141 AT4G33520 1078 / 0.0 Arabidopsis thaliana heavy metal ATPase 6, P-type ATP-ase 1 (.1.2.3) Potri.001G205400 [exp] 388 / 2e-120 AT4G33520 1066 / 0.0 Arabidopsis thaliana heavy metal ATPase 6, P-type ATP-ase 1 (.1.2.3) Potri.006G220201 [exp] 283 / 1e-88 AT5G21930 369 / 1e-121 ARABIDOPSIS HEAVY METAL ATPASE 8, P-type ATPase of Arabidopsis 2 (.1.2.3) Potri.001G019100 [exp] 255 / 8e-72 AT1G63440 1043 / 0.0 heavy metal atpase 5 (.1) Potri.001G158900 [exp] 244 / 8e-68 AT5G44790 1465 / 0.0 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) Potri.003G075700 [exp] 243 / 2e-67 AT5G44790 1526 / 0.0 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) Potri.001G105800 [exp] 234 / 3e-64 AT1G63440 1538 / 0.0 heavy metal atpase 5 (.1) Potri.003G125600 [exp] 226 / 2e-61 AT1G63440 1527 / 0.0 heavy metal atpase 5 (.1) Potri.003G125700 [exp] 218 / 5e-59 AT1G63440 1395 / 0.0 heavy metal atpase 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00122 [flax] [poplar] E1-E2_ATPase E1-E2 ATPase PF00403 [flax] [poplar] HMA Heavy-metal-associated domain CL0137 [flax] [poplar] HAD PF00702 [flax] [poplar] Hydrolase haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Lus10038070 pacid=23163743 polypeptide=Lus10038070 locus=Lus10038070.g ID=Lus10038070.BGIv1.0 annot-version=v1.0 ATGATGGCAGCTGAGCTGCTTCGGCTCCCGGTGACGCCTCTTCCCAAGTTCTGCCACGGCCAAAGTCAGAGGTTCCGGTTTGATCTCGTTGACTTCAATG CTCAGCTGTCCAAACGACGCCACTTCCTCCTCCGCCGACAGCGCGTATTACCCAATTTCTCTGTTTCCAGCTCTCTCCAGACTAAGCCTGAACTTCAGGA TTCTCCCATTGAAGCTCCCGAGCGCCTCAAGGACTCCCCCCTCCTACTCGATGTGAGCGGAATGATGTGCGGCGCGTGCGTTTCCCGCGTCAAATCGGTT ATCTCCTCCGACGGTCGAGTCGAATCCGTCGTGGTCAATATGCTGACGGAGACGGCTGCTGTGAAGTTGAGGCCCGAGGCTGTGGAGACCGAGACGCCGG TGAATGTCGCCGATAGTTTGGCTCAGAGGCTGACTGATTGCGGATTCGATTCGAAGAGGAGGATCTCGGGGATGGGAGTGGCCGGAAATGTGAAGAAGTG GAAGGAGATGGTGGAGAAGAAAGAAGAGATGTTGATTAACAGTAGGAACCGTGTGGTTTTCGCATGGACTTTGGTGGCTCTGTGTTGTGGATCGCATGGT TCGCACATCTTGCATTCATTCGGCATCCATCTCGCTCACGGCTCATTCTTCGACTTCCTTCATAATTCCTACGTGAAGGGTGGTTTGGCTACTGGCGCTC TTTTGGGACCTGGGAGAGACCTACTCTTTGATGGGTTACTAGCCTTCAAGAAGGGATCGCCAAATATGAACTCTCTTGTTGGATTTGGATCCATAGCTGC ATTTCTCATTAGTGCCGTCTCTCTTCTCAACCCTGGACTCCAATGGGATGCATCCTTCTTTGATGAACCGGTTTTGTTCAGTATTTGGACAAGACATCCT ATATTATTTAGAAGAATCTCATACAGTGTTGATGATTTGAATCTATCCAAGTTTCTCATGGATGGCTCTCTTTTTAGCATGCAGGTCATGCTTCTTGGTT TTGTGCTGCTTGGGCGTTCTCTTGAGGAAAGAGCTAGGATTAGGGCATCTAGTGATATGAACGAACTTCTCTCACTAGTATCTACTCAATCGCGACTTGT AGTGACTTCATCAGATAACAATTCGGCTGCTGATACTGTTCTTGGATCTGATGCCATATGTGCTGAGGTTCCAACGGATGATGTTCGTGTTGGAGACACA ATACTGGTCCTACCTGGAGAAACAATTCCAGTAGATCTAACATCTAAGTTTACTGGACAGGGGGCAGTAGTCGCAGGCAGAAGTGTGGTAGATGAATCCA TGCTTACAGGTGAATCGCTGCCAGTGTTTAAGGAAAAAGACCTCAAAGTTTCAGCTGGAACAGTAAATTGGGATGGTCCCTTGAGGATTGAGGCCTCATC TACTGGCTCAAACTCTACGATATCAAGGATTGTTAGCATGGTTGAAGAAGCTCAAGGACGTGAAGCACCTGTACAAAGACTTGCAGATGCTATAGCTGGG CCATTTGTGTACAGCATAATGACAATATCAGCAGCAACTTTTGCTTTTTGGTACTACATCGGATCACATATGTTTCCTGATGTGCTGCTTAATGATATTG CTGGTCCAGATGGAAATCCATTACTTTTGAGCCTGAAACTTGCGGTGGATGTTTTGACAGGGACTCTCACAAAAGGAAAACCATCTGTCTCGGGTGTGGC ATCACTTAGTCATGAAGAAGAAGAAATTCTACAGATTGCTGCTGCAGTGGAGAAGACGGCACAACACCCAATTGCAAGAGCTGTCATAAATAAGGCAGAA TCCCTGAATTTGAACATCCCAGAAACAAGAGGGCAAATAACAGAACCAGGTTTTGGAACTTTAGCAGAGGTAGAGGGACGTTTAGTGGCAGTTGGTTCTT TGGATTGGGTCAACAAACGTTTTCATCAAAGGGCAGCTGTTACTGATATAGAGAAACTTGAAGCTGCAGTCAGGCATCAATCTTCGAAAGAGATGCTCAA TTCTAACTATTCTAAAACAGTTGTTTATGTTGGACGGGAAGGGGAAGGTATTATTGGTGCTATTGCACTATCCGACTGTCTGCGTCATGATGCTGAGTCT ACTGTTAGTAGGCTCCATCAGAAAGGGATCACAGCAGTCCTTTTATCAGGAGACAGGGAAGAAGCAGTAGCAACAATAGCAAAAAATGTTGGAATAGAGA GTGAGTTCATCAATGCATCTTTATCTCCGCAGCAGAAATCTGAGGTCATATCAACTCTTCAATCTGCAGGACACAACGTTGCAATGGTAGGTGATGGGAT AAATGATGCACCGTCGCTGGCTCTAGCTGATGTTGGAATTGCACTGCAATCTGAAACACAGGAGACTGCTGCGTCTGATGCAGCATCCATTATCCTGCTC GGCAACAAACTCTCACAGGTGGTGGATGCTCTGGATCTGGCACGAGCGACAATGGCCAAAGTTCATCAAAATTTATCGTGGGCAGTTGCTTATAATATCG TGGCTGTTCCTATCGCTGCTGGAGTGTTGCTTCCCCAATATGATTTCGCAATGACGCCTTCACTTTCAGGAGGACTAATGGCATTGAGCTCCATACTTGT AGTGTCCAACTCATTGCTTCTGCAGCTTCACCGATCCCCGAATGCTAGAAAGGGCTCTGTTTAA
AA sequence Show only first row Show all	>Lus10038070 pacid=23163743 polypeptide=Lus10038070 locus=Lus10038070.g ID=Lus10038070.BGIv1.0 annot-version=v1.0 MMAAELLRLPVTPLPKFCHGQSQRFRFDLVDFNAQLSKRRHFLLRRQRVLPNFSVSSSLQTKPELQDSPIEAPERLKDSPLLLDVSGMMCGACVSRVKSV ISSDGRVESVVVNMLTETAAVKLRPEAVETETPVNVADSLAQRLTDCGFDSKRRISGMGVAGNVKKWKEMVEKKEEMLINSRNRVVFAWTLVALCCGSHG SHILHSFGIHLAHGSFFDFLHNSYVKGGLATGALLGPGRDLLFDGLLAFKKGSPNMNSLVGFGSIAAFLISAVSLLNPGLQWDASFFDEPVLFSIWTRHP ILFRRISYSVDDLNLSKFLMDGSLFSMQVMLLGFVLLGRSLEERARIRASSDMNELLSLVSTQSRLVVTSSDNNSAADTVLGSDAICAEVPTDDVRVGDT ILVLPGETIPVDLTSKFTGQGAVVAGRSVVDESMLTGESLPVFKEKDLKVSAGTVNWDGPLRIEASSTGSNSTISRIVSMVEEAQGREAPVQRLADAIAG PFVYSIMTISAATFAFWYYIGSHMFPDVLLNDIAGPDGNPLLLSLKLAVDVLTGTLTKGKPSVSGVASLSHEEEEILQIAAAVEKTAQHPIARAVINKAE SLNLNIPETRGQITEPGFGTLAEVEGRLVAVGSLDWVNKRFHQRAAVTDIEKLEAAVRHQSSKEMLNSNYSKTVVYVGREGEGIIGAIALSDCLRHDAES TVSRLHQKGITAVLLSGDREEAVATIAKNVGIESEFINASLSPQQKSEVISTLQSAGHNVAMVGDGINDAPSLALADVGIALQSETQETAASDAASIILL GNKLSQVVDALDLARATMAKVHQNLSWAVAYNIVAVPIAAGVLLPQYDFAMTPSLSGGLMALSSILVVSNSLLLQLHRSPNARKGSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G21930		ATHMA8, HMA8, P...	ARABIDOPSIS HEAVY METAL ATPASE...		Lus10038070 [exp]	0	1
AT5G15140			Galactose mutarotase-like supe...		Lus10015365 [exp]	4.9	0.9005
AT1G31690			Copper amine oxidase family pr...		Lus10013356 [exp]	5.4	0.9298
AT5G24070			Peroxidase superfamily protein...		Lus10022962 [exp]	7.1	0.9216
AT5G06250	B3		AP2/B3-like transcriptional fa...		Lus10021326 [exp]	8.6	0.9244
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Lus10042287 [exp]	8.8	0.9020
AT5G23535			KOW domain-containing protein ...		Lus10042614 [exp]	11.2	0.9075
AT5G20045			unknown protein		Lus10019440 [exp]	11.5	0.9183
AT1G04850			ubiquitin-associated (UBA)/TS-...		Lus10037827 [exp]	19.7	0.9062
AT4G24490		ATRGTA1	RAB geranylgeranyl transferase...		Lus10001518 [exp]	19.8	0.8990
AT1G01470		LSR3, LEA14	LIGHT STRESS-REGULATED 3, LATE...		Lus10001869 [exp]	19.9	0.9115

Compare expression of checked genes

Lus10038070 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.