Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26330 1449 / 0 QRP1, ER QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1, ERECTA, Leucine-rich receptor-like protein kinase family protein (.1) AT5G62230 1132 / 0 ERL1 ERECTA-like 1 (.1.2) AT5G07180 1123 / 0 ERL2 ERECTA-like 2 (.1) AT5G63930 461 / 2e-145 Leucine-rich repeat protein kinase family protein (.1) AT4G20140 455 / 8e-142 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT1G17230 430 / 9e-134 Leucine-rich receptor-like protein kinase family protein (.1) AT1G17750 426 / 3e-132 AtPEPR2 PEP1 receptor 2 (.1) AT5G44700 427 / 1e-131 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT5G56040 419 / 1e-129 Leucine-rich receptor-like protein kinase family protein (.1.2) AT4G26540 402 / 1e-123 Leucine-rich repeat receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009790 [exp] 1660 / 0 AT2G26330 1547 / 0.0 QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1, ERECTA, Leucine-rich receptor-like protein kinase family protein (.1) Lus10031689 [exp] 1113 / 0 AT5G62230 1437 / 0.0 ERECTA-like 1 (.1.2) Lus10031108 [exp] 1096 / 0 AT5G62230 1422 / 0.0 ERECTA-like 1 (.1.2) Lus10011761 [exp] 436 / 3e-137 AT5G63930 913 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10018911 [exp] 430 / 1e-133 AT3G24240 1033 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Lus10027951 [exp] 421 / 3e-131 AT1G08590 1256 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10017267 [exp] 420 / 6e-131 AT1G75820 1305 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10036242 [exp] 409 / 2e-126 AT4G20270 1248 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) Lus10028612 [exp] 397 / 2e-121 AT5G48940 1051 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G220100 [exp] 1504 / 0 AT2G26330 1547 / 0.0 QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1, ERECTA, Leucine-rich receptor-like protein kinase family protein (.1) Potri.015G132200 [exp] 1144 / 0 AT5G62230 1404 / 0.0 ERECTA-like 1 (.1.2) Potri.012G130400 [exp] 1139 / 0 AT5G62230 1412 / 0.0 ERECTA-like 1 (.1.2) Potri.019G025500 [exp] 434 / 3e-135 AT5G63930 1320 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.002G019900 [exp] 428 / 3e-134 AT1G75820 1226 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Potri.005G241500 [exp] 423 / 3e-132 AT1G75820 1268 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Potri.013G051300 [exp] 414 / 6e-128 AT5G63930 1281 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G223900 [exp] 410 / 3e-127 AT5G65700 992 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.001G053400 [exp] 409 / 1e-125 AT2G33170 1311 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.012G088100 [exp] 406 / 9e-125 AT5G56040 1005 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10038071 pacid=23163719 polypeptide=Lus10038071 locus=Lus10038071.g ID=Lus10038071.BGIv1.0 annot-version=v1.0 ATGGTAGAAGCTCTCGTTTTCGCTACTATCCTCTGTTTGATGGTTGGCTCTGTGTTTTCTGACGACGGGGAAACGCTGGTGGAGATAAAGAAGTCATTCA GAGATGTGGACAATTTTCTGTATGATTGGACGGACTACACTTCTTCTGATTATTGCGTGTGGAGAGGGATCATTTGTGACAATGTCACCTCCAATGTCAT GGCACTCAACCTGTCAGGGTTGAATCTTGAAGGAGAAATCTCACCGGCAATTGGAAATCTCAAAGGCCTCATCTCCATTGATCTCAGGGAAAATCGACTA TCTGGGCAGATACCTGATGAGATTGGTGATTGTTCTTCGCTGAAAAGCCTGGACTTGTCGCTTAATCAGATATATGGAGACATACCATTTTCTATCTCAA AGCTGAAGCAACTTGAATACCTCATTTTGAAGAACAACCAACTGATCGGCCCTATTCCATCAACCCTGTCTCAGATTCCAAACTTGAAAGTCTTAGACCT GGCCCAGAATAAGCTTAGTGGGGAGATACCAAGGCTTATTTATTGGAATGAAGTTTTGCAGTATCTGGGTTTGCGGGGGAACAATTTGGTTGGCTCACTT TCCATTGATATTTGCCAGCTAACTGGGCTTTGGTATTTTGATGTAAGGAACAACAGTTTGAGCGGCACTATCCCTGAGAATATAGGCAACTGTACTGGCT TCCAGATCTTGGACCTCTCTTATAACCAACTCACTGGAGAGATTCCATTCAACATTGGCTTCTTGCAAGTTGCTACATTATCTTTGCAAGGCAATCAGTT GGAAGGAAAGATTCCATCAGTGATTGGTCTGATGCAGGCTCTTACTGTGCTAGATTTAAGTTGCAACAAGCTGAGTGGGCCTATTCCTGCTATACTTGGT AACTTGAGTTACACTGAGAAACTGTATTTGCATAGTAATAAGCTTTCTGACTCCATCCCCCCAGAACTAGGGAATATGACAAAGCTACACTATTTGGCAT TGAATGATAATAAGCTTACAGGACGTATTCCACCGGAGCTGGGGAAGTTAACAGATTTGTTTGATCTAAACGTTGCCAATAATTTTTTAGAAGGACCAAT TCCTGATAATCTAAGCTCATGCACAAACCTTAATAGTCTCAATGTGCATGGGAACAAGCTGAATGGATCCATCCCTCGTGCGTTTCAAAAGCTAGAGAGT ATGACATATCTGAATCTTTCTTCAAATTATGTTAAGGGACCCATTCCAATTGAATTGTCACGGATTGGCAATTTGGATACCTTAGACATCTCTAGTAACA AGATTAGTGGGTCCATTCCCTCTTCACTTGGTGACTTGGAGCATCTTCTTAAGATGAACTTGAGCAGAAACCAAATTAAAGGATCAATTCCTGGAGAGTT CGGCAACCTAAGAAGTGTAATGGAGATAGACCTTTCGGAGAATCATCTCTCGGGATCAATTCCTCAGGAACTTGCTCAGCTTCAGAACATGTTTTCACTG AAAGTGGAGTACAATAATCTATCAGGCGATTTATCGTCTCTGGTGAATTGCCTAAGTCTCAGCTTCTTAAATGTGTCCTATAACAGCCTTGTTGGCGTTA TTCCTACAAACAACAACTTCTCCAGGTTTTCACCAAATAGATTAACCATGAGCTCTTTTCTATCGGTTAATTTGGTTAACCGATTTCAGTCATTGAATCG CTTTCCCGACTTTACAATTTCCAAAGCGGCAATACTGGGAATAGCGCTTGGAGCTCTTGTGCTTCTTCTGATGATATTAGTGGCAGCTTTTCGGCCTCAT AATCCTCCACCTTTTCTTGAAGGATCAGTTGATAAGCCAGTGAGTTATTCGACCCCAAAGTTGGTGATTCTTCACATGAACATGGCCCTCCATGTGTATG AAGATATCATGAGAATGACCGAGAATCTGAGTGAGAAGTATATAATCGGTTATGGTGCATCGAGCACGGTGTACAAGTGTGTCCTCAAGAATTGCAAGCC AATTGCCATCAAGAGACTGTACTCTCACTATCCTCAATGCTTGAAAGAATTCGAAACAGAGCTAGGAACAGTTGGGAGCATAAAACACCGAAATCTAGTC AGCCTTCAGGGTTATTCACTCTCTTCTTCAGGACACCTCCTTTTCTACGATTACATGGAAAATGGCAGTCTCTGGGATCTGCTTCATGGCCCTACAAAGA AGAAAAAGCTGGAGTGGAATACTCGTCTGAAGATAGCAATGGGAGCTGCTCAAGGGCTAGCATATCTGCACCACGATTGTAGTCCTCGTATCATTCATAG GGACGTGAAGTCGTCTAACATTCTTCTGGACAAGGATTTTGAAGCACATTTAACTGATTTTGGGATTGCCAAGAGCTTGTGTGTGTCGAAATCCTATACC TCCACCTACGTAATGGGCACAATTGGTTACATAGATCCAGAGTACGCAAGAACTTCACGTCTCACCGAGAAGTCTGATGTTTACAGCTACGGGATCGTTC TACTTGAGTTGCTGACTGGAAAGAAAGCTGTCGATAATGAATGCAATCTCCATCATCTGATACTGTCCAAGGCAGCAAACAACGCAGTGATGGAGACTGT TGATGGTGAGGTAACTGAAACTTGCAAGGATCTTGGAGCTGTGAAGAAGGTATTCCAGCTGGCACTTTTATGTGCGAAGCGTCAGCCATCAGAGCGACCA ACAATGCATGAAGTGACACGAGTGCTGAGTAGCCTGATGCCACCATACTCACCACCAAAGCAATGCACGCAGTTGGACGGGGCAGGGAAAGTTGGAGGAG GGTGCTACATGGATGACTATGCTAATCTCAAGACTCCACATCTTGTGAATTGTCCATCGATGAGCACCTCGGATGCTCAGCTGTTCCTCAAGTTTGGGGA AGTTATATCCCAAAACAGCGAGTGA
AA sequence Show only first row Show all	>Lus10038071 pacid=23163719 polypeptide=Lus10038071 locus=Lus10038071.g ID=Lus10038071.BGIv1.0 annot-version=v1.0 MVEALVFATILCLMVGSVFSDDGETLVEIKKSFRDVDNFLYDWTDYTSSDYCVWRGIICDNVTSNVMALNLSGLNLEGEISPAIGNLKGLISIDLRENRL SGQIPDEIGDCSSLKSLDLSLNQIYGDIPFSISKLKQLEYLILKNNQLIGPIPSTLSQIPNLKVLDLAQNKLSGEIPRLIYWNEVLQYLGLRGNNLVGSL SIDICQLTGLWYFDVRNNSLSGTIPENIGNCTGFQILDLSYNQLTGEIPFNIGFLQVATLSLQGNQLEGKIPSVIGLMQALTVLDLSCNKLSGPIPAILG NLSYTEKLYLHSNKLSDSIPPELGNMTKLHYLALNDNKLTGRIPPELGKLTDLFDLNVANNFLEGPIPDNLSSCTNLNSLNVHGNKLNGSIPRAFQKLES MTYLNLSSNYVKGPIPIELSRIGNLDTLDISSNKISGSIPSSLGDLEHLLKMNLSRNQIKGSIPGEFGNLRSVMEIDLSENHLSGSIPQELAQLQNMFSL KVEYNNLSGDLSSLVNCLSLSFLNVSYNSLVGVIPTNNNFSRFSPNRLTMSSFLSVNLVNRFQSLNRFPDFTISKAAILGIALGALVLLLMILVAAFRPH NPPPFLEGSVDKPVSYSTPKLVILHMNMALHVYEDIMRMTENLSEKYIIGYGASSTVYKCVLKNCKPIAIKRLYSHYPQCLKEFETELGTVGSIKHRNLV SLQGYSLSSSGHLLFYDYMENGSLWDLLHGPTKKKKLEWNTRLKIAMGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCVSKSYT STYVMGTIGYIDPEYARTSRLTEKSDVYSYGIVLLELLTGKKAVDNECNLHHLILSKAANNAVMETVDGEVTETCKDLGAVKKVFQLALLCAKRQPSERP TMHEVTRVLSSLMPPYSPPKQCTQLDGAGKVGGGCYMDDYANLKTPHLVNCPSMSTSDAQLFLKFGEVISQNSE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26330		QRP1, ER	QUANTITATIVE RESISTANCE TO PLE...		Lus10038071 [exp]	0	1
AT2G26330		QRP1, ER	QUANTITATIVE RESISTANCE TO PLE...		Lus10009790 [exp]	1.0	0.9783
AT2G42840		PDF1	protodermal factor 1 (.1)		Lus10031390 [exp]	2.8	0.9731
AT1G77270			unknown protein		Lus10029729 [exp]	4.5	0.9320
AT5G62230		ERL1	ERECTA-like 1 (.1.2)		Lus10031108 [exp]	4.6	0.9640
AT2G38560		RDO2, TFIIS	REDUCED DORMANCY 2, transcript...		Lus10025215 [exp]	4.7	0.9313
AT1G63640			P-loop nucleoside triphosphate...		Lus10032264 [exp]	4.9	0.9475
AT2G42840		PDF1	protodermal factor 1 (.1)		Lus10010941 [exp]	5.5	0.9503
AT5G62230		ERL1	ERECTA-like 1 (.1.2)		Lus10031689 [exp]	5.7	0.9523
AT1G72970		HTH, EDA17	HOTHEAD, embryo sac developmen...		Lus10003833 [exp]	6.5	0.9474
AT3G48200			unknown protein		Lus10035212 [exp]	6.6	0.9415

Compare expression of checked genes

Lus10038071 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.