Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24890 47 / 2e-06 unknown protein AT4G31510 45 / 7e-06 unknown protein AT2G24550 42 / 9e-05 unknown protein AT5G21940 42 / 0.0001 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009793 [exp] 282 / 3e-97 AT5G24890 51 / 1e-07 unknown protein Lus10020142 [exp] 45 / 1e-05 AT2G24550 113 / 9e-30 unknown protein Lus10026939 [exp] 45 / 2e-05 AT2G24550 116 / 4e-31 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G219800 [exp] 84 / 3e-19 AT5G21940 135 / 3e-38 unknown protein Potri.018G048100 [exp] 78 / 3e-17 AT5G21940 110 / 4e-29 unknown protein Potri.018G008200 [exp] 48 / 1e-06 AT5G24890 131 / 3e-37 unknown protein Potri.006G273100 [exp] 48 / 1e-06 AT5G24890 129 / 1e-36 unknown protein Potri.009G120300 [exp] 39 / 0.001 AT4G26288 45 / 2e-06 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038073 pacid=23163835 polypeptide=Lus10038073 locus=Lus10038073.g ID=Lus10038073.BGIv1.0 annot-version=v1.0 ATGTCGGAGATCCAACGCCGCCGTCAGTCGGAGACCGAGTGCAGTAGTCCGTCGGCGTCTTCGTCTTCTTCTTCTATTGGTGGCAACAGCGACTGCGACG AAGAGGAGAAGGAGGTGCAGAGCGCGTATAGAGGAGGAGGAGGGAGAAGTCTTGATTTGGGTGCTTTGGAACAAAACCTGCCTCATCCCGACTTGCCCAA GGGAGGATTATCCAAGTGCTACGCTGGGAAGGCGAAATCATTCTCAGATCTAGGCAAGGCGGAATCGATTGCCAATATCAGCGAGATTGAGAAGAAGGAA CACGCCCTCAACAAGCGTCGACGAAATCATATTGCTCTCAAACACCGCCCCATCACTTCCTGCAGAAGTGCTCTCTCCCTTGCAGCAACCGCCGTGGAAG AAGGAGGAGCTGGATTGACCATTCAGGATTCAAATTCAGCTTCTTCTACTGATTTTCGATATCATCACCACGACCACCGCCACCCTCAGCAACATCATAG CAACAGCTATCTACCACCGATGTACCCAGGATCAATGACGCATCAGAAACTCGCATCCTTGCCGTCTCCAACACCGTTGAGATCATTCTCCATGGCTGAT CTGCATTACTTTTCTGCTGCTGCTGCTGCTTCTACAAACTAA
AA sequence Show only first row Show all	>Lus10038073 pacid=23163835 polypeptide=Lus10038073 locus=Lus10038073.g ID=Lus10038073.BGIv1.0 annot-version=v1.0 MSEIQRRRQSETECSSPSASSSSSSIGGNSDCDEEEKEVQSAYRGGGGRSLDLGALEQNLPHPDLPKGGLSKCYAGKAKSFSDLGKAESIANISEIEKKE HALNKRRRNHIALKHRPITSCRSALSLAATAVEEGGAGLTIQDSNSASSTDFRYHHHDHRHPQQHHSNSYLPPMYPGSMTHQKLASLPSPTPLRSFSMAD LHYFSAAAAASTN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G43850			unknown protein		Lus10038073 [exp]	0	1
AT5G54080		HGO	"homogentisate 1,2-dioxygenase...		Lus10028135 [exp]	7.5	0.8932
AT5G04760	MYB		Duplicated homeodomain-like su...		Lus10041088 [exp]	10.3	0.8970
AT1G73280		SCPL3	serine carboxypeptidase-like 3...		Lus10018667 [exp]	22.8	0.8879
AT1G56290			CwfJ-like family protein (.1)		Lus10021219 [exp]	24.4	0.8929
AT4G25680			PPPDE putative thiol peptidase...		Lus10014960 [exp]	25.6	0.8372
AT1G32130		HNI9, ATIWS1	HIGH NITROGEN INSENSITIVE 9, A...		Lus10030992 [exp]	28.8	0.8891
AT3G52220			unknown protein		Lus10039101 [exp]	33.3	0.8796
AT5G24870			RING/U-box superfamily protein...		Lus10026941 [exp]	35.2	0.8859
AT1G31870			unknown protein		Lus10034532 [exp]	43.6	0.8550
AT5G57580			Calmodulin-binding protein (.1...		Lus10001436 [exp]	47.1	0.8713

Compare expression of checked genes

Lus10038073 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.