Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G43860 660 / 0 ATGH9A4 glycosyl hydrolase 9A4 (.1) AT4G09740 412 / 3e-140 ATGH9B14 glycosyl hydrolase 9B14 (.1) AT4G02290 407 / 6e-138 ATGH9B13 glycosyl hydrolase 9B13 (.1) AT1G02800 402 / 2e-136 ATCEL2 cellulase 2 (.1) AT4G23560 401 / 3e-136 ATGH9B15 glycosyl hydrolase 9B15 (.1) AT1G64390 392 / 1e-130 ATGH9C2 glycosyl hydrolase 9C2 (.1) AT4G11050 389 / 2e-129 ATGH9C3 glycosyl hydrolase 9C3 (.1) AT2G32990 382 / 4e-128 ATGH9B8 glycosyl hydrolase 9B8 (.1) AT1G71380 376 / 2e-126 ATCEL3 ,ATGH9B3 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B3, cellulase 3 (.1) AT1G23210 367 / 8e-123 ATGH9B6 glycosyl hydrolase 9B6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009794 [exp] 921 / 0 AT3G43860 684 / 0.0 glycosyl hydrolase 9A4 (.1) Lus10017525 [exp] 439 / 1e-150 AT4G09740 645 / 0.0 glycosyl hydrolase 9B14 (.1) Lus10008208 [exp] 414 / 8e-141 AT4G02290 812 / 0.0 glycosyl hydrolase 9B13 (.1) Lus10032377 [exp] 399 / 2e-133 AT1G64390 989 / 0.0 glycosyl hydrolase 9C2 (.1) Lus10010201 [exp] 396 / 4e-132 AT1G48930 812 / 0.0 glycosyl hydrolase 9C1 (.1) Lus10001833 [exp] 392 / 2e-130 AT1G64390 965 / 0.0 glycosyl hydrolase 9C2 (.1) Lus10033957 [exp] 380 / 2e-127 AT1G64390 797 / 0.0 glycosyl hydrolase 9C2 (.1) Lus10003888 [exp] 383 / 3e-127 AT1G64390 960 / 0.0 glycosyl hydrolase 9C2 (.1) Lus10009724 [exp] 380 / 3e-127 AT2G32990 693 / 0.0 glycosyl hydrolase 9B8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G219700 [exp] 669 / 0 AT3G43860 689 / 0.0 glycosyl hydrolase 9A4 (.1) Potri.001G098800 [exp] 425 / 6e-145 AT4G09740 669 / 0.0 glycosyl hydrolase 9B14 (.1) Potri.002G202400 [exp] 403 / 2e-136 AT4G02290 818 / 0.0 glycosyl hydrolase 9B13 (.1) Potri.014G126900 [exp] 400 / 2e-135 AT4G02290 799 / 0.0 glycosyl hydrolase 9B13 (.1) Potri.014G157600 [exp] 397 / 5e-134 AT2G32990 800 / 0.0 glycosyl hydrolase 9B8 (.1) Potri.003G139600 [exp] 400 / 1e-133 AT1G64390 999 / 0.0 glycosyl hydrolase 9C2 (.1) Potri.019G069300 [exp] 388 / 8e-131 AT1G71380 762 / 0.0 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B3, cellulase 3 (.1) Potri.007G071200 [exp] 390 / 6e-130 AT1G48930 850 / 0.0 glycosyl hydrolase 9C1 (.1) Potri.001G092200 [exp] 389 / 2e-129 AT1G64390 951 / 0.0 glycosyl hydrolase 9C2 (.1) Potri.001G083200 [exp] 385 / 2e-129 AT1G02800 593 / 0.0 cellulase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [flax] [poplar] 6_Hairpin PF00759 [flax] [poplar] Glyco_hydro_9 Glycosyl hydrolase family 9
Representative CDS sequence Show only first row Show all	>Lus10038075 pacid=23163800 polypeptide=Lus10038075 locus=Lus10038075.g ID=Lus10038075.BGIv1.0 annot-version=v1.0 ATGACAATGAGGTCAGATGTGGCGGCAGCAATTATTGCATTAGTGGTGGCAACGTCGTTTGTTTGTGTGAATGCACATTTTGATTACAAAGATGCATTAA CCAAATCTCTTATCTTCTTAGAAGCCCAGAGGTCAGGCAAACTTCCCCCAACTAATCGCCTCCCGTGGAGAGGCGACTCCGCCCTCGATGACGGTAAAGT AGAAAATGTTGATCTGGTAGGAGGGTACTACGACGCAGGGGACAACGTCAAGTACGGACTCCCAATGGCGTTTACGGTGACGACGCTGGCGATGAATGCG GTGTTCTACCACAAGGAGCTTCAGCAGGCTGGGGAATGGCAAAACACTATGGATGCTATAAAATGGGGAACAGATTTCTTCCTCAAGGCGTGCTCTAAGC GTAACAAGCTATATGTTCAGGTAGGGGATCCAGTGAAGGACCACCAGTGTTGGGTCCGACCCGAAAATATGCAGACCCCACGACCCGTGTTGCAGATCCA TGAGAATGACCCCGGTAGCGAGATCGCGGCTGAGGTGGCCGCTGCATTTGCTTCCTCCTCCATGGTCTTCAGAAGCGTCAACAAGACCTATGCTCGTCAA CTCCTCAATAAAGCTAAGACGATGTTCTTATTTGCCAAATCACACAAGGCAACTTTCGACGGGGAATGCCCCTTCTATTGCTCTTTCTCCGGCTACAATG ATGAGCTAATGTGGGGGGCGACATGGTTATATATGGCAACAAGGAATGAGACCTACTTGAAATACCTCAAGGAGGATGCCATTAGTGGGTGCGTAGCTGA GTTCAGTTGGGATCTGAAATACGCCGGCGTTCATATTCTGCTAGCTAAACTATTCTTCGAAGGAGAAAAAAGTTTCGAGCAGTACAAGGGACAAGCCGAC AGTTTCATATGCTCAAACCTGCCAGAGAGCCCATACCATCAAGTGCACATAACACCAGGCGGAATGATCCACCTCCGCGACGGAGCAAACAGCCAATATG TCACGGGAACCGCAAACCTCTTCGCAATCTACAGCGACATCCTCCGACAGTTCAACCAGAAGGTTTGTTGCGGGCCCAAACAGTTCGACGCGGAAGCACT GTTAGGCTTCGCAAGGCAGCAAATGGACTATCTCCTCGGGAACAACCCGGAGAAGAGATCGTACATGGTTGGGTTCGGGAACAACCCTCCTGTGCAGGCC CATCACCGTGGAGCCTCCATCCCTTGCAATGCCCTCGCTGACGTAAGCTGCCCCATGAGCTTTGTTGAGTATTTCAACAAGGATACACCTAACCCTAACG AGCTCACTGGAGCCATTCTTGGTGGACCGGACAAGAACGACAAGTTCGTTGACAAGCGTTGGGAGTCTTGCTACACGGAACCTTGTACCTACGTCAATTC CCTAGCTGTTGGCGCCCTTGCCAAGCTCGCTGGTTGTTCTCCACCACCGCATCATTAA
AA sequence Show only first row Show all	>Lus10038075 pacid=23163800 polypeptide=Lus10038075 locus=Lus10038075.g ID=Lus10038075.BGIv1.0 annot-version=v1.0 MTMRSDVAAAIIALVVATSFVCVNAHFDYKDALTKSLIFLEAQRSGKLPPTNRLPWRGDSALDDGKVENVDLVGGYYDAGDNVKYGLPMAFTVTTLAMNA VFYHKELQQAGEWQNTMDAIKWGTDFFLKACSKRNKLYVQVGDPVKDHQCWVRPENMQTPRPVLQIHENDPGSEIAAEVAAAFASSSMVFRSVNKTYARQ LLNKAKTMFLFAKSHKATFDGECPFYCSFSGYNDELMWGATWLYMATRNETYLKYLKEDAISGCVAEFSWDLKYAGVHILLAKLFFEGEKSFEQYKGQAD SFICSNLPESPYHQVHITPGGMIHLRDGANSQYVTGTANLFAIYSDILRQFNQKVCCGPKQFDAEALLGFARQQMDYLLGNNPEKRSYMVGFGNNPPVQA HHRGASIPCNALADVSCPMSFVEYFNKDTPNPNELTGAILGGPDKNDKFVDKRWESCYTEPCTYVNSLAVGALAKLAGCSPPPHH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G43860		ATGH9A4	glycosyl hydrolase 9A4 (.1)		Lus10038075 [exp]	0	1
AT5G14010	C2H2ZnF	KNUCKLES, KNU	KNUCKLES, C2H2 and C2HC zinc f...		Lus10022816 [exp]	1.7	0.9872
AT1G04100	AUX_IAA	IAA10	indoleacetic acid-induced prot...		Lus10001501 [exp]	11.6	0.9888
AT4G17970		ATALMT12, ALMT1...	"aluminum-activated, malate tr...		Lus10004556 [exp]	16.6	0.9879
AT4G39950		CYP79B2	"cytochrome P450, family 79, s...		Lus10031145 [exp]	22.7	0.9866
AT3G21720		ICL	isocitrate lyase (.1)		Lus10015122 [exp]	23.4	0.9868
AT3G29810		COBL2	COBRA-like protein 2 precursor...		Lus10026288 [exp]	23.5	0.9765
AT1G70580		GGT2, AOAT2	GLUTAMATE:GLYOXYLATE AMINOTRAN...		Lus10036850 [exp]	28.7	0.9864
AT3G21720		ICL	isocitrate lyase (.1)		Lus10031552 [exp]	31.4	0.9864
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10032263 [exp]	33.5	0.9864
					Lus10028932 [exp]	35.6	0.9864

Compare expression of checked genes

Lus10038075 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.