Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G21950 298 / 4e-101 alpha/beta-Hydrolases superfamily protein (.1) AT4G33180 289 / 2e-97 alpha/beta-Hydrolases superfamily protein (.1) AT4G39955 191 / 5e-59 alpha/beta-Hydrolases superfamily protein (.1) AT5G09430 191 / 6e-59 alpha/beta-Hydrolases superfamily protein (.1) AT1G78210 179 / 2e-54 alpha/beta-Hydrolases superfamily protein (.1) AT1G72620 164 / 2e-48 alpha/beta-Hydrolases superfamily protein (.1) AT1G17430 161 / 3e-47 alpha/beta-Hydrolases superfamily protein (.1) AT2G18360 151 / 1e-43 alpha/beta-Hydrolases superfamily protein (.1) AT4G36610 148 / 2e-42 alpha/beta-Hydrolases superfamily protein (.1) AT4G36530 52 / 3e-07 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023147 [exp] 189 / 3e-58 AT4G39955 414 / 3e-146 alpha/beta-Hydrolases superfamily protein (.1) Lus10020926 [exp] 186 / 1e-56 AT1G78210 358 / 3e-124 alpha/beta-Hydrolases superfamily protein (.1) Lus10019631 [exp] 182 / 3e-55 AT1G72620 270 / 3e-89 alpha/beta-Hydrolases superfamily protein (.1) Lus10012409 [exp] 178 / 2e-53 AT1G17430 259 / 1e-84 alpha/beta-Hydrolases superfamily protein (.1) Lus10022106 [exp] 176 / 2e-53 AT1G72620 264 / 4e-87 alpha/beta-Hydrolases superfamily protein (.1) Lus10000630 [exp] 167 / 1e-49 AT4G39955 386 / 2e-135 alpha/beta-Hydrolases superfamily protein (.1) Lus10041747 [exp] 166 / 6e-49 AT2G18360 436 / 1e-154 alpha/beta-Hydrolases superfamily protein (.1) Lus10025873 [exp] 139 / 3e-39 AT2G18360 243 / 2e-79 alpha/beta-Hydrolases superfamily protein (.1) Lus10036159 [exp] 103 / 4e-26 AT5G09430 308 / 3e-106 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G219400 [exp] 376 / 1e-131 AT4G33180 329 / 3e-113 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G097400 [exp] 195 / 1e-60 AT1G78210 407 / 1e-143 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G074066 [exp] 186 / 6e-57 AT4G39955 416 / 1e-146 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G313100 [exp] 185 / 2e-56 AT5G09430 466 / 7e-167 alpha/beta-Hydrolases superfamily protein (.1) Potri.007G094700 [exp] 184 / 4e-56 AT4G39955 400 / 1e-140 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G168600 [exp] 175 / 2e-52 AT1G17430 282 / 1e-93 alpha/beta-Hydrolases superfamily protein (.1) Potri.007G024400 [exp] 157 / 6e-46 AT2G18360 452 / 2e-161 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G122600 [exp] 155 / 6e-45 AT2G18360 444 / 5e-158 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G116900 [exp] 149 / 6e-43 AT2G18360 324 / 3e-111 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G117100 [exp] 146 / 7e-42 AT2G18360 304 / 4e-103 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10038076 pacid=23163916 polypeptide=Lus10038076 locus=Lus10038076.g ID=Lus10038076.BGIv1.0 annot-version=v1.0 ATGGGTCGTTGCAGCCTCGCCTCCCTCTACACCTTATACCTCCGCCGCTGCTTCGGCGCTGCCGGGCTCACTCAGCAGACCACCGACACCGACTCAACCA CCACTGTCAAGTTCTGGGGGCCTACCTCAAACAACATTGACAAGCCCACTCTGGTTCTAATCCACGGCTTTGGGCCCGTGGCCATGTGGCAGTGGGGGCG CCAGGTCCAATCCTTCGCCCCTCACTACAACCTCTACGTCCCTGACCTTGTCTTCTTCGGGGAGTCCCATACCACGTCGTCTCGGAGGTCAGAGGTGTTC CAAGCGGAGACGGTGGCGGCGCTGCTTGAGAAAGTTGGGGCGAAAAGGTACTCGGTGGTGGGGACCAGTTACGGCGGCTTCGTGGCATACCATGTGGCGA GGATGTGGCCTGACAGGGTGGACAAGGTGGTGATTGCCAGCTCCGGCGTCAACATGCGGCGGAGCGACAACGAGGAGCTGGTAAAGCGGGGTAAAGTTGA GACGATCAGTGACCTAATGCTTCCCCAAACGCCAGCCCAGTTGAGGGCGTTGCTTGACGTTGCTGCCAACAGAAACGTCCGCCTCGTCCCTGCTTTTGTA CTGCGCGACTTTGTTCATAAACTGTACGCGGAGAAGAGGAATGAAAAACTGGAGCTTTTGAAAGGGTTGACACTAGGTCAAGATGACTCTGTAAATCTTT CTCCGCTTCAACAGGATGTTCTACTAATTTGGGGAGAAGAAGACAAGATTTTCCCTCTGAGGATGGCTCACGAGCTGAATGGGTTAATAGGAGAGAAGAA GAATGTGAAGTTGGAGATAATGAAGAAGGCATCACATGTACCACAAATTGAATTCCCAGCCAAATTTAATGCGATTGTTAAAACATTCCTGTCCTCATAA
AA sequence Show only first row Show all	>Lus10038076 pacid=23163916 polypeptide=Lus10038076 locus=Lus10038076.g ID=Lus10038076.BGIv1.0 annot-version=v1.0 MGRCSLASLYTLYLRRCFGAAGLTQQTTDTDSTTTVKFWGPTSNNIDKPTLVLIHGFGPVAMWQWGRQVQSFAPHYNLYVPDLVFFGESHTTSSRRSEVF QAETVAALLEKVGAKRYSVVGTSYGGFVAYHVARMWPDRVDKVVIASSGVNMRRSDNEELVKRGKVETISDLMLPQTPAQLRALLDVAANRNVRLVPAFV LRDFVHKLYAEKRNEKLELLKGLTLGQDDSVNLSPLQQDVLLIWGEEDKIFPLRMAHELNGLIGEKKNVKLEIMKKASHVPQIEFPAKFNAIVKTFLSS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33180			alpha/beta-Hydrolases superfam...		Lus10038076 [exp]	0	1
AT1G72970		HTH, EDA17	HOTHEAD, embryo sac developmen...		Lus10003176 [exp]	1.7	0.9613
AT1G72970		HTH, EDA17	HOTHEAD, embryo sac developmen...		Lus10003833 [exp]	2.4	0.9547
AT4G21750	HD	ATML1	MERISTEM LAYER 1, Homeobox-leu...		Lus10020059 [exp]	2.8	0.9566
AT1G73360	HD	ATHDG11, HDG11,...	ENHANCED DROUGHT TOLERANCE 1, ...		Lus10031892 [exp]	3.5	0.9464
AT4G21750	HD	ATML1	MERISTEM LAYER 1, Homeobox-leu...		Lus10006765 [exp]	5.5	0.9324
AT1G05230	HD	HDG2	homeodomain GLABROUS 2 (.1.2.3...		Lus10018360 [exp]	6.3	0.9400
AT3G48200			unknown protein		Lus10035212 [exp]	6.5	0.9323
AT1G02205		CER1	ECERIFERUM 1, Fatty acid hydro...		Lus10011473 [exp]	6.5	0.9068
AT1G73990		SPPA1, SPPA	signal peptide peptidase (.1)		Lus10013336 [exp]	9.9	0.9298
AT1G73360	HD	ATHDG11, HDG11,...	ENHANCED DROUGHT TOLERANCE 1, ...		Lus10031321 [exp]	11.3	0.9145

Compare expression of checked genes

Lus10038076 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.