Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21270 572 / 0 WAK2 wall-associated kinase 2 (.1) AT1G21230 559 / 0 WAK5 wall associated kinase 5 (.1) AT1G21240 533 / 4e-180 WAK3 wall associated kinase 3 (.1) AT1G21250 517 / 3e-174 PRO25, WAK1 cell wall-associated kinase (.1) AT1G21210 489 / 2e-163 WAK4 wall associated kinase 4 (.1) AT1G16260 413 / 6e-134 Wall-associated kinase family protein (.1.2) AT1G16130 412 / 2e-133 WAKL2 wall associated kinase-like 2 (.1) AT1G79680 409 / 4e-132 ATWAKL10 WALL ASSOCIATED KINASE (WAK)-LIKE 10 (.1) AT1G16120 396 / 2e-127 WAKL1 wall associated kinase-like 1 (.1) AT1G69730 386 / 5e-123 Wall-associated kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034085 [exp] 436 / 3e-143 AT1G16130 526 / 5e-179 wall associated kinase-like 2 (.1) Lus10013383 [exp] 427 / 4e-139 AT1G21270 427 / 4e-139 wall-associated kinase 2 (.1) Lus10013384 [exp] 422 / 9e-137 AT1G21270 430 / 3e-140 wall-associated kinase 2 (.1) Lus10013385 [exp] 418 / 1e-135 AT1G21270 437 / 2e-143 wall-associated kinase 2 (.1) Lus10003063 [exp] 405 / 2e-131 AT1G16130 514 / 2e-173 wall associated kinase-like 2 (.1) Lus10004504 [exp] 346 / 5e-109 AT1G16130 411 / 5e-134 wall associated kinase-like 2 (.1) Lus10008105 [exp] 330 / 8e-103 AT1G16120 419 / 3e-137 wall associated kinase-like 1 (.1) Lus10014387 [exp] 239 / 3e-69 AT5G02070 493 / 8e-168 Protein kinase family protein (.1) Lus10032741 [exp] 236 / 2e-67 AT2G23450 578 / 0.0 Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G076000 [exp] 645 / 0 AT1G21270 631 / 0.0 wall-associated kinase 2 (.1) Potri.002G076100 [exp] 594 / 0 AT1G21270 559 / 0.0 wall-associated kinase 2 (.1) Potri.004G192100 [exp] 500 / 1e-167 AT1G21270 480 / 6e-160 wall-associated kinase 2 (.1) Potri.004G192500 [exp] 499 / 5e-167 AT1G16260 525 / 2e-177 Wall-associated kinase family protein (.1.2) Potri.004G192700 [exp] 498 / 5e-167 AT1G21270 464 / 4e-154 wall-associated kinase 2 (.1) Potri.004G192900 [exp] 497 / 2e-166 AT1G21270 458 / 1e-151 wall-associated kinase 2 (.1) Potri.009G154600 [exp] 492 / 1e-164 AT1G21270 447 / 2e-147 wall-associated kinase 2 (.1) Potri.009G154100 [exp] 489 / 2e-163 AT1G21270 437 / 2e-143 wall-associated kinase 2 (.1) Potri.004G192400 [exp] 487 / 1e-162 AT1G21270 466 / 2e-154 wall-associated kinase 2 (.1) Potri.002G075901 [exp] 470 / 3e-159 AT1G21270 507 / 5e-174 wall-associated kinase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0001 [flax] [poplar] EGF PF07645 [flax] [poplar] EGF_CA Calcium-binding EGF domain CL0001 [flax] [poplar] PF08488 [flax] [poplar] WAK Wall-associated kinase CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10038077 pacid=23163671 polypeptide=Lus10038077 locus=Lus10038077.g ID=Lus10038077.BGIv1.0 annot-version=v1.0 ATGTACCGCCGACCGTTGATGCAGCTGCTGCTACTACTACAACTACAGCATTTCCAGCTTCCTCTATTATCCTTGGCGGCGGTTGATGTCCTTCCTCCCA CGTCTCCTTTACCGCCACTAGCATCAGTAGCAGTATTAGTGCAGCCGCCGTCGGGATACTTCCATATCGAGACGTCCAGCTGTCCAACCCACTGCGGCGA CTTGGAAATACCGTTCCCATTTGGCACAAAGGAAGGTTGCTACCTAAACAAAGACTTCCTAATAACATGCAACGAAACAGGGACACCCCTGCTAGGCTAC TCCAACTTACAAGTCCTAAACATCTCGGTGGATGATGGGGAGCTCCGAATATCGACCACCATCGCCCACGATTGCTACAACAAGTCAGGGAATCAGGCGA GTAACTCTCCATCCTCCATCTCGGATCTCAAGTTCCCGGTGTCCAACACCAGAAACAAGTTCACAGCTGTGGGTTGCGACACGTACGCGCTAGTTCAGGG AGGGGACGATCAGCGTTACGCGACAGGATGCATCGCTTACTGTAACAAGAGGAAAGACGTGGTCAACGGTTCGTGCGCAGGGGTAGGTTGTTGCCAAGCT TCGATTCCTAAAGGGGTTTTCGGGTTTCACGCCAGCCTCAACAGCTACAACTTCCATAAGGCTGTTTGGAGATTCAACCCATGTAGCTATGCGTTTGTGG TGGAGGAGAATCAGTTTAACTTCTCCACGTTGGACTTGAAGGATTTGAGAGGGATTAAGAGTTTTCCAGTGGTGTTGGATTGGGCAATCGGGAACCAAAC TTGTAAGCAGGCTGCTGCTCATGGAATTGCTTGTATGGACAACAATAGTGTGTGTTATGAGCCAGATCATGCTACTACTTCTGGTGGCTACCGTTGCAGA TGCTCCCCTGGTTATCGCGGCAATCCTTATCTTCCCGCCGGCTGTCAAGATATAAACGAATGCCAAGATCCAAAGATGAATGGATGCTCTGGGTTGTGTG AGAATACAGAGGGAAGTTACATTTGTTCCTGCCCAAAAGGTTACTACGGGGACGGCAGAAAAGATGGCACGACTTGTCTTCCCAGCCGGCTCTCATCTCT TCAACCCATCCTTGGGGCAAGCGCAAGCGTGTCAGTTGTATTCTTGTTTATCTATCTTATCTTCATGGGAGTCCACAAACGAAAACTGATTATGCTGAAA AGAGAGTATTTCAAGCAAAATGGAGGTATACTGTTGCAGCAACTTCTCTTCAAAACCTCCTCATCATCAGTGGACGGTGGTGATGACACGGCTAGGATAT TCACTGAGCAAGAGCTCAACCTCGCTACCAACAACTTCAACAAGTCAATGGAGGTGGGTCGTGGCGGCTTCGGGGTGGTTTACAAGGGAACCTTCTCTGA TACTGCGGTGGCAATCAAGAAGTCGATGGCAATAGACCGAACCCAAATCCACCAATTTGTGAACGAAGTGATAGTTTTGTCCCAAATTCACCATCCAAAC GCCGTTAAGCTACTGGGTTGTTGTTTGGAAACTGCAGTGCCTTTGTTAGTCTACGAGTTCATTACAAATGGAACGCTCTTTCAACATCTTCACTCTCCCG ATTTTAAGGGGTCTCTGAGTTGGGAGACACGCCTAAGGATCGCAGTCGAGACTGCCGCTGCACTAGCTCACATGCATTCCGTGCAGATTATACATAGGGA CGTCAAGTCTGCTAATATACTTGTTGACGATATCTTCACTGCTAAAGTTGCAGACTTTGGTGTGTCCAGATTGATACCTTTTGACCAGGACCAAATTTCA ACGCTCGTTCAAGGCACATTGGGTTATATGGACCCCGAGTACTTCCAGTCTGGAATCTTAACGGAAAAGAGTGATGTGTATAGCTTCGGTGTGTTACTGG CGGAGCTGCTGACAGGGAAAATGGCAATATCATCGGAATGTAAGGAGAAGAGCTTGGCACTGCACTTCCTTTGTTCATTGAAAGAGGAGTATTTGATGGA GATATTAGAAGAGAGGGTAAAGAAAGAAACAGATAATGAGGAGGTTTCCAAAGTAGCCAATATTGCAAGGAGTTGTTTGAAGCTGGAAGGAGAGGATAGA CCTAGTATGAAGAATGTTTTTGAGGAGCTTCAAGCATTGAGGAGACAACACCACCAAGTAGCTCTAGTAGTTGAATGCTCCCCCAGCCCCATTATTATGG CTTCCACTTTCCAACATGTCAAGGCCAGATAA
AA sequence Show only first row Show all	>Lus10038077 pacid=23163671 polypeptide=Lus10038077 locus=Lus10038077.g ID=Lus10038077.BGIv1.0 annot-version=v1.0 MYRRPLMQLLLLLQLQHFQLPLLSLAAVDVLPPTSPLPPLASVAVLVQPPSGYFHIETSSCPTHCGDLEIPFPFGTKEGCYLNKDFLITCNETGTPLLGY SNLQVLNISVDDGELRISTTIAHDCYNKSGNQASNSPSSISDLKFPVSNTRNKFTAVGCDTYALVQGGDDQRYATGCIAYCNKRKDVVNGSCAGVGCCQA SIPKGVFGFHASLNSYNFHKAVWRFNPCSYAFVVEENQFNFSTLDLKDLRGIKSFPVVLDWAIGNQTCKQAAAHGIACMDNNSVCYEPDHATTSGGYRCR CSPGYRGNPYLPAGCQDINECQDPKMNGCSGLCENTEGSYICSCPKGYYGDGRKDGTTCLPSRLSSLQPILGASASVSVVFLFIYLIFMGVHKRKLIMLK REYFKQNGGILLQQLLFKTSSSSVDGGDDTARIFTEQELNLATNNFNKSMEVGRGGFGVVYKGTFSDTAVAIKKSMAIDRTQIHQFVNEVIVLSQIHHPN AVKLLGCCLETAVPLLVYEFITNGTLFQHLHSPDFKGSLSWETRLRIAVETAAALAHMHSVQIIHRDVKSANILVDDIFTAKVADFGVSRLIPFDQDQIS TLVQGTLGYMDPEYFQSGILTEKSDVYSFGVLLAELLTGKMAISSECKEKSLALHFLCSLKEEYLMEILEERVKKETDNEEVSKVANIARSCLKLEGEDR PSMKNVFEELQALRRQHHQVALVVECSPSPIIMASTFQHVKAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21270		WAK2	wall-associated kinase 2 (.1)		Lus10038077 [exp]	0	1
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10022866 [exp]	12.0	0.7086
AT2G20830			transferases;folic acid bindin...		Lus10039789 [exp]	12.2	0.7331
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Lus10005762 [exp]	61.2	0.6835
AT3G15570			Phototropic-responsive NPH3 fa...		Lus10030390 [exp]	67.0	0.6700
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Lus10039094 [exp]	70.4	0.6864
AT2G37010		ATNAP12	non-intrinsic ABC protein 12 (...		Lus10023199 [exp]	77.8	0.6607
					Lus10000861 [exp]	78.8	0.6518
AT3G47600	MYB	ATMYB94, AtMYBC...	myb domain protein 94 (.1)		Lus10008616 [exp]	90.1	0.6666
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Lus10040043 [exp]	90.1	0.6552
AT1G27940		ABCB13, PGP13	ATP-binding cassette B13, P-gl...		Lus10017270 [exp]	119.8	0.6556

Compare expression of checked genes

Lus10038077 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.