Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45700 713 / 0 sterile alpha motif (SAM) domain-containing protein (.1) AT3G26680 258 / 1e-77 SNM1, ATSNM1 SENSITIVE TO NITROGEN MUSTARD 1, DNA repair metallo-beta-lactamase family protein (.1.2.3) AT1G66730 221 / 3e-60 AtLIG6 DNA LIGASE 6 (.1) AT1G27410 128 / 1e-31 DNA repair metallo-beta-lactamase family protein (.1) AT1G19025 71 / 1e-12 DNA repair metallo-beta-lactamase family protein (.1) AT1G70180 52 / 1e-06 Sterile alpha motif (SAM) domain-containing protein (.1), Sterile alpha motif (SAM) domain-containing protein (.2) AT5G48680 47 / 2e-05 Sterile alpha motif (SAM) domain-containing protein (.1) AT3G07170 45 / 7e-05 Sterile alpha motif (SAM) domain-containing protein (.1) AT3G48800 42 / 0.0008 Sterile alpha motif (SAM) domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017623 [exp] 232 / 6e-64 AT1G66730 1584 / 0.0 DNA LIGASE 6 (.1) Lus10033580 [exp] 203 / 6e-57 AT1G66730 456 / 1e-146 DNA LIGASE 6 (.1) Lus10013876 [exp] 65 / 2e-10 AT1G19025 478 / 7e-165 DNA repair metallo-beta-lactamase family protein (.1) Lus10022780 [exp] 48 / 5e-06 AT3G07170 219 / 5e-73 Sterile alpha motif (SAM) domain-containing protein (.1) Lus10016718 [exp] 46 / 8e-05 AT5G23680 173 / 6e-52 Sterile alpha motif (SAM) domain-containing protein (.1) Lus10036012 [exp] 45 / 0.0001 AT5G23680 171 / 4e-51 Sterile alpha motif (SAM) domain-containing protein (.1) Lus10014516 [exp] 45 / 0.0001 AT1G70180 80 / 1e-16 Sterile alpha motif (SAM) domain-containing protein (.1), Sterile alpha motif (SAM) domain-containing protein (.2) Lus10038185 [exp] 42 / 0.0006 AT3G07170 234 / 9e-79 Sterile alpha motif (SAM) domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G218300 [exp] 797 / 0 AT2G45700 732 / 0.0 sterile alpha motif (SAM) domain-containing protein (.1) Potri.014G139600 [exp] 264 / 4e-80 AT3G26680 556 / 0.0 SENSITIVE TO NITROGEN MUSTARD 1, DNA repair metallo-beta-lactamase family protein (.1.2.3) Potri.004G094200 [exp] 232 / 7e-64 AT1G66730 1656 / 0.0 DNA LIGASE 6 (.1) Potri.013G149650 [exp] 112 / 2e-26 AT1G27410 396 / 5e-137 DNA repair metallo-beta-lactamase family protein (.1) Potri.013G121700 [exp] 94 / 3e-21 AT1G27410 315 / 3e-107 DNA repair metallo-beta-lactamase family protein (.1) Potri.007G106700 [exp] 70 / 4e-12 AT1G19025 571 / 0.0 DNA repair metallo-beta-lactamase family protein (.1) Potri.013G121201 [exp] 44 / 8e-06 AT1G27410 100 / 1e-26 DNA repair metallo-beta-lactamase family protein (.1) Potri.001G062800 [exp] 47 / 3e-05 AT3G48800 136 / 8e-38 Sterile alpha motif (SAM) domain-containing protein (.1) Potri.003G164600 [exp] 47 / 4e-05 AT3G48800 133 / 5e-37 Sterile alpha motif (SAM) domain-containing protein (.1) Potri.002G244700 [exp] 45 / 4e-05 AT3G07170 213 / 1e-70 Sterile alpha motif (SAM) domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0398 [flax] [poplar] RMMBL_DRMBL PF07522 [flax] [poplar] DRMBL DNA repair metallo-beta-lactamase CL0003 [flax] [poplar] SAM PF00536 [flax] [poplar] SAM_1 SAM domain (Sterile alpha motif)
Representative CDS sequence Show only first row Show all	>Lus10038078 pacid=23163885 polypeptide=Lus10038078 locus=Lus10038078.g ID=Lus10038078.BGIv1.0 annot-version=v1.0 ATGGCTTCAAGATTCAACAACTCATCTCAGCATCATCCTCCACTCCCCCTCTCGATCCCACACCCAGACGACGACGATGCCGATTTCCAGCCCCCTGTCT CACTACAATCGAAAGCCTCCCTCAGAACACATCTCGCTCCTTCCGCAAACTCTCACCGTCGTCCGACTAAGAAGCCCAAGTCAGTATCTGCTAATTTTGC TGGGAAGGAGAACGTGGGATTCGAACCGACGAAGAGAAATGAAGTAAAGGAGTTTGATATTACGAGCGGAGATCCGGCTTGCAGCTTAGATTTGATACCT TCTAGCATAGATTGTAGCTACCAGAACGATGAAGTCGACACCGGCTGCGAGGAGGATAGAGATGTGGAACTGAATGGAGGGTATTTATGTAATTCCATAG AAGCTAGGTTAATGACTAAATTTACGGCGCATAGCGGAGCCAGTGGTGCCGGAAGCGAGTTGTTGGATTCGGATTCCGATGGGTCAAATAACGAGCTGGA TGTACTGATTAAGCTGTGTGATGTTGATGGTGAACCAGAGGAGGAGTGTTGCTCTGTTGAATGCCCGCTTTGCGGGGCTGATATTTCAGACTTGAGCGAG GAAGCCAGACATGTTCACACCAACGACTGCCTTGACAAGGGAGAGAATCACTTTGAACAAGTTCTGTTTGAGGGAAGTGAGAGAACCCTCCTCCAACCTG AAGTCGTCGACGGTCCTGGGCTTTCCCCTCCGCAGCATGGTGTTGATCTTTCTCCCGTCCAACAATGGCTAAGGGGTCTAGGTTTAGAAAGATATGAAGA ACCTTTTGTGCGGGAAGAAATTGATTGGGATACCTTGAAGTGGCTCTCAGAGGAGGATCTTGTAAATATAGGTGTATCCACACTTGGTCCTAGGAAGAAA ATTATGCATGCTCTTGCACAACTTAGAAAAAGTTGTGATGGAGGCGATGAGCAGAACGCTTCAAGTGCTGTAGGTGTATTGAACAATGCCGAAGAGATAA ATGTGGCGACATCTAAAGTTAATTGTATCGAAACTAATAATCTGGGGTCTGAGACTAACAAACAAAGTTCAAATAAACTGATCACCGATTATTTTCTGGG GTCAGTTACAACAACGAAAAGACATTATACAAGCTCTACTAAACAGAAAGGACCGGAGAAAGGCCAGCCAGATTCTGTTCGTAAAGGCTCAGGGAAAAAA TATATCAAAAGGGGTCGGACCAGAGATATTCCTTGCTGGTGTAGCATTCCGGGGACATCATTTCGAGTGGATGCGTTCAAGTATCTCAGAGGTGATTGTG CTCATTGGTTTCTCACACATTTCCATATGGATCATTATCAGGGATTGACGAGATCCTTCTGCCACGGGAAAGTTTACTGCTCTTTGATTACTGCAAAGCT TGTAAACACTAAGATTGGGATTCCTTGGGAGAAATTAGAAATTTTGCCTTTAAACCAAAAGATCACTATAGACGGTATTAATGTGACATGTTTGGATGCA AACCACTGCCCTGGTTCAATCATCATTCTCTTTGAGCCTCCTAATGGTAAGGCTGTACTGCACACTGGAGATTTCCGTTATAGCGAGAAGATGTCAAGCA TCAGTATTTTACAGAACAGCCATATTCATACTCTGATCCTTGATACTACGTACTGTAATCCGCAGTATGATTTTCCAAAGCAGGGGGCTGTCATACAATT TGTTATTGAGGCAATTCAAGCGGAAACATTCAACCCTAAAACCTTGTTTCTGATTGGAAGTTACACAATAGGAAAGGAAAGGCTGTTCTTGGAGGTAGCG CGTGTCTTACGGAAGAAAGTTTATGTTACAGCTGCAAAGTTGCAGATTCTAAAATGCCTGGGCTTCTCCAAAGAAGAAATGCAGTATTTTACATTAAATG AAAGGGAGAGCCAAATCCACGTGGTGCCAATGTGGACACTAGCAAGTTTCAAAAGACTAAAACATGTTGCAAACCAGTATGCGAGTCGATTCAGTCTTAT AGTTGCTTTCTCGCCAACTGGTTGGACGTTTGGCAAAGGGAAGAAAAAGTCTCCAGGTCCAGGAAGGAAGTGGCAGCAAGGAACAATTATAAGGTATGAA GTACCTTACAGTGAGCACAGCAGTTACAGTGAGCTGAGAGAGTTTGTGAAGTTGGTTTCCCCTGAAAGGATAATACCAAGTGTAAATAATGACGGACCAG AAGCTGCTGATTCCATGGTTTCCCTCCTCTGCTCTTAA
AA sequence Show only first row Show all	>Lus10038078 pacid=23163885 polypeptide=Lus10038078 locus=Lus10038078.g ID=Lus10038078.BGIv1.0 annot-version=v1.0 MASRFNNSSQHHPPLPLSIPHPDDDDADFQPPVSLQSKASLRTHLAPSANSHRRPTKKPKSVSANFAGKENVGFEPTKRNEVKEFDITSGDPACSLDLIP SSIDCSYQNDEVDTGCEEDRDVELNGGYLCNSIEARLMTKFTAHSGASGAGSELLDSDSDGSNNELDVLIKLCDVDGEPEEECCSVECPLCGADISDLSE EARHVHTNDCLDKGENHFEQVLFEGSERTLLQPEVVDGPGLSPPQHGVDLSPVQQWLRGLGLERYEEPFVREEIDWDTLKWLSEEDLVNIGVSTLGPRKK IMHALAQLRKSCDGGDEQNASSAVGVLNNAEEINVATSKVNCIETNNLGSETNKQSSNKLITDYFLGSVTTTKRHYTSSTKQKGPEKGQPDSVRKGSGKK YIKRGRTRDIPCWCSIPGTSFRVDAFKYLRGDCAHWFLTHFHMDHYQGLTRSFCHGKVYCSLITAKLVNTKIGIPWEKLEILPLNQKITIDGINVTCLDA NHCPGSIIILFEPPNGKAVLHTGDFRYSEKMSSISILQNSHIHTLILDTTYCNPQYDFPKQGAVIQFVIEAIQAETFNPKTLFLIGSYTIGKERLFLEVA RVLRKKVYVTAAKLQILKCLGFSKEEMQYFTLNERESQIHVVPMWTLASFKRLKHVANQYASRFSLIVAFSPTGWTFGKGKKKSPGPGRKWQQGTIIRYE VPYSEHSSYSELREFVKLVSPERIIPSVNNDGPEAADSMVSLLCS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45700			sterile alpha motif (SAM) doma...		Lus10038078 [exp]	0	1
AT5G54090			DNA mismatch repair protein Mu...		Lus10032917 [exp]	1.7	0.9191
AT3G05040		HST1, HST	HASTY 1, HASTY, ARM repeat sup...		Lus10033845 [exp]	2.4	0.9329
AT1G73960		TAF2	TBP-associated factor 2 (.1.2)		Lus10016716 [exp]	2.8	0.9302
AT5G02250		ATMTRNASEII, RN...	ribonucleotide reductase 1, EM...		Lus10024387 [exp]	4.0	0.8983
AT5G14770			Tetratricopeptide repeat (TPR)...		Lus10026206 [exp]	9.2	0.8836
AT1G16480			Tetratricopeptide repeat (TPR)...		Lus10033685 [exp]	10.6	0.8849
AT4G34430		ATSWI3D, CHB3	SWITCH/SUCROSE NONFERMENTING 3...		Lus10023583 [exp]	11.5	0.9012
AT1G76050			Pseudouridine synthase family ...		Lus10017250 [exp]	12.2	0.8930
AT4G16310		LDL3	LSD1-like 3 (.1)		Lus10024311 [exp]	12.6	0.9097
AT2G47980		SCC3, ATSCC3	sister-chromatid cohesion prot...		Lus10015341 [exp]	13.0	0.8863

Compare expression of checked genes

Lus10038078 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.