Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26270 356 / 4e-118 unknown protein AT3G43930 311 / 3e-100 BRCT domain-containing DNA repair protein (.1.2) AT2G26267 39 / 0.0003 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009795 [exp] 848 / 0 AT2G26270 397 / 2e-134 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G218800 [exp] 549 / 0 AT2G26270 522 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038079 pacid=23163787 polypeptide=Lus10038079 locus=Lus10038079.g ID=Lus10038079.BGIv1.0 annot-version=v1.0 ATGGCCGGTAGAGTCCAACAACAAGTGATCGATAGTAAAGGCTGTTCCAGGCTTTTCCTTGGTCTCTCTTCTTCCAGTTCCATTACCATGCCTTCTTTCA GAGGTTCAAGGTTACCACTTGGCTCTGAATCACAGCTTCCGCCATTTGCCGCTCTCACCATTTGTGTCACTGGTCTCTCCAAAGAAGCAAGGAAGCAAGT TAAGGAAGCCACGGAGAGATTAGGCGGTCAATACAGTCCTAATTTGCACCCTCAGTTAAGGTTGAGTGAGTCACTCTACACTGTTAAGAATTTGGAAGAC AATGGAGTTCGCTTGGATGATTTAAACCGGCTTGTTGGTTTTGGTGATGCTGACAAGTCTTGCATTCCTTTTGGTGTTAGCGACACTAAACAATTTGACT CATCTAAGAGTACACATAAGCATGTTTCTTGGAGAAGTTCTTACCTGATTTTTTATACTGCTTCCATGTATGTGGATCCAGATATTTCAAATGATTTGAG GATTAAGGTCAGAGAGGCTGCTAGCCAAGAAGGGGCTACATTCCTAGATCAATGGTTTGCTGGCTGTGGTGTGAGTCATATAGTGTGTGAAGAGGCTTCT GTTCCAAGGTACCTCGGCCACACAAACAACATTGTAACGCCGCTGTGGGTACTAAAAACTGTCAAGGAGAAACATGTACAGCGGCTTGTCCACATATCTG CGGACTTGGCCAGGCAGGTTGCGTCACTGCTGGAAAATTCTCCCCATGGCATTGTGGGCAAGGATGTTAGCAGGGAAGTTACCCAGTGTGCAGGGAGTTC AATGAGTAGTGTAACACAGGCAGACAGGGAAAAGATTGTTGATTTTGCTAAGCAACGGGTTAGAGATCGTCGTGGTCGTCGCATGCAGACATGTCAAACT CCACTTCGTCCTTTAACTCCAAGCAGCCTTCTTGAATCAATTTGCTGGTCAATATCTGAACCTGCATCAGCTGCTTCTATTTACACAGACTGTGTTAGTA GTGAAGATACAAGCGAATACCACACGTCTGAGTTCCATAATGCAAAAGGTGATGCCAGAGATTCGGAGGCTTCATTTGCAAATCTCACCAGGCGGCTCAC TGAAAGGTTGAGAAAAAAGGTTCCCATTGAAATGTTCATCATGCACATTTCAGCACTATGTGTTGGCGATGTTGCTAATTCTCCTAGTACCGGTTCTTGC AGAGAAAAGACTGAACTTGTATTCCGCAGCCATTTCCTCACTATCCTGTTTCCTATAGACCGGTTTTCAGAGATTGGACCTACTTCAAAAACCTTTTTCA GCGATGGTGGTTTTACTTGCTTACAGGTTTTGGATCACATTTATGCATTTTATCAGGAGAACATATCAGCAGCAGAAGTAGAAGTGGCAATTCATGCGGA TTCTAGATATGCGGATCGGCTTCGTGCTGCGTACTGCAGTAAAGAAACTGGAGAGCTTGGTTATGTGAAGTATAAACGTATAGAGTTGTTGGGGAGTCTG AGGAGTTTCGAGATGTTGAAACGGGTTAGCGGGGATAACAGCAGTAATGTATATGAACTATTGATTAGGGCATAA
AA sequence Show only first row Show all	>Lus10038079 pacid=23163787 polypeptide=Lus10038079 locus=Lus10038079.g ID=Lus10038079.BGIv1.0 annot-version=v1.0 MAGRVQQQVIDSKGCSRLFLGLSSSSSITMPSFRGSRLPLGSESQLPPFAALTICVTGLSKEARKQVKEATERLGGQYSPNLHPQLRLSESLYTVKNLED NGVRLDDLNRLVGFGDADKSCIPFGVSDTKQFDSSKSTHKHVSWRSSYLIFYTASMYVDPDISNDLRIKVREAASQEGATFLDQWFAGCGVSHIVCEEAS VPRYLGHTNNIVTPLWVLKTVKEKHVQRLVHISADLARQVASLLENSPHGIVGKDVSREVTQCAGSSMSSVTQADREKIVDFAKQRVRDRRGRRMQTCQT PLRPLTPSSLLESICWSISEPASAASIYTDCVSSEDTSEYHTSEFHNAKGDARDSEASFANLTRRLTERLRKKVPIEMFIMHISALCVGDVANSPSTGSC REKTELVFRSHFLTILFPIDRFSEIGPTSKTFFSDGGFTCLQVLDHIYAFYQENISAAEVEVAIHADSRYADRLRAAYCSKETGELGYVKYKRIELLGSL RSFEMLKRVSGDNSSNVYELLIRA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26270			unknown protein		Lus10038079 [exp]	0	1
AT3G27730		MER3, RCK	ROCK-N-ROLLERS, ATP binding;AT...		Lus10014551 [exp]	10.5	0.7390
AT2G45670			calcineurin B subunit-related ...		Lus10015853 [exp]	11.8	0.7118
AT5G10960			Polynucleotidyl transferase, r...		Lus10029710 [exp]	13.0	0.6977
AT5G24810			ABC1 family protein (.1.2)		Lus10026971 [exp]	22.3	0.7054
AT4G04320			malonyl-CoA decarboxylase fami...		Lus10020031 [exp]	27.0	0.6883
AT5G56270	WRKY	ATWRKY2, WRKY2,...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10020215 [exp]	32.2	0.7156
AT5G52560		ATUSP	UDP-sugar pyrophosphorylase (....		Lus10000971 [exp]	33.2	0.6849
AT2G35630		GEM1, MOR1	MICROTUBULE ORGANIZATION 1, AR...		Lus10023398 [exp]	34.5	0.6594
AT3G27730		MER3, RCK	ROCK-N-ROLLERS, ATP binding;AT...		Lus10032137 [exp]	34.5	0.6872
AT1G05280			Protein of unknown function (D...		Lus10027153 [exp]	39.5	0.6326

Compare expression of checked genes

Lus10038079 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.