Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26280 648 / 0 CID7 CTC-interacting domain 7 (.1) AT5G25540 56 / 1e-08 CID6 CTC-interacting domain 6 (.1) AT5G11440 48 / 2e-06 CID5, IPD1 INCREASED POLYPLOIDY LEVEL IN DARKNESS 1, CTC-interacting domain 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009796 [exp] 1081 / 0 AT2G26280 701 / 0.0 CTC-interacting domain 7 (.1) Lus10021572 [exp] 147 / 5e-40 ND / Lus10036254 [exp] 133 / 1e-35 ND 38 / 0.003 Lus10029457 [exp] 105 / 4e-24 AT3G04020 129 / 4e-34 unknown protein Lus10023023 [exp] 100 / 2e-23 ND / Lus10010236 [exp] 93 / 9e-21 ND / Lus10011088 [exp] 91 / 1e-20 ND / Lus10010237 [exp] 84 / 1e-17 ND / Lus10021960 [exp] 47 / 7e-06 AT5G25540 98 / 3e-26 CTC-interacting domain 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G047700 [exp] 724 / 0 AT2G26280 700 / 0.0 CTC-interacting domain 7 (.1) Potri.006G218900 [exp] 715 / 0 AT2G26280 699 / 0.0 CTC-interacting domain 7 (.1) Potri.006G246600 [exp] 43 / 0.0002 AT5G11440 103 / 2e-28 INCREASED POLYPLOIDY LEVEL IN DARKNESS 1, CTC-interacting domain 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08590 [flax] [poplar] DUF1771 Domain of unknown function (DUF1771) PF01713 [flax] [poplar] Smr Smr domain
Representative CDS sequence Show only first row Show all	>Lus10038081 pacid=23163642 polypeptide=Lus10038081 locus=Lus10038081.g ID=Lus10038081.BGIv1.0 annot-version=v1.0 ATGAGCCACTCGGTAGCCCAAATATGCCGGTGTATTAGGAACCATCGTCCGAAGGAGGAACACGTCTCGAGCAAGGATATGACCAAGGCTCTCATGGCGG GCTGTGATAGTCCTAGCCAACCCTCCAAGAAGAAATATGTGAAGAGGATTCCTGAAAAGGCTCACCTTGATCCTCCCAGCAACAGATGGCACATCATCCT TCCGCACTCGAGTCTAGAATCAAGCATTGGCAGCAGTCAAGCCATCATCACCTCGATAGACCAACAGTTGCTGAAACCAAGCCTTCTAAGTGTCTGCCTA ATCATAGAAACAAAATGCAACTACAAACTCGTCAAAGATTTTTCAAGCAAGTCTACAGCTTTGAATCCAAATGCCGCGGAGTTCGTTCCATTTTCCCTTA AATCATCTGGAAGTACTTCAAATTCCGCAGATGCAGCTCCAACTTCAAGGATTACTACTTCTGGAGCAGCTCTCCATCGATCGGAGTCATCTGTTTCTAA TGCATCTGATGATGAGGCACATCGGTTCTGGCGTCACCAGCTCCCAGATGATATCACCCCAGACTTTAAGATCACGGGTGAAGATGAATCTCATGGATAT GGAGACATTTCTTTCGCTGGCTTGTCCTTGAATGATGGTGGTGAAGCCTCTAGGTTCTCCACTTTTGCTGGCAGTGGGTATGGTTTTAATGCACAGCGAG AAGTTTCTCCTCGTCAGGGAAATGGTAGCAGCTTTAGCGACAAGATGAGGCTTGCAGCTTCTTCGTATGTCGAAGATTCAAATGCTGGATGTCTTTTGCA TTCGCCGACTAAGCCATGGGACAAGCAATTTGTCAACACTGATCAACTTCTTGGCAATGGGAGGGAGATGAATACGTCTTACAGTGAGAACTCCAGACAA AAGTTCGTCAATGACATTTTAAGCGAACAGGCTTTGATGGATGGGTCAGAAATGAATCCTCTAGAGTTTCTTGCTTCTCAGTTCCCTGGATTTGCCGCAG AAAGCCTTGCGGAAGTTTATTATGCCAATGGATGCGACCTAAATCTCACTATTGAGATGCTCATTCAGCTAGAGCTTCAGGTCGATGCTGGTCTTAGCCA GAGTACGACCTCGAAGACCTTGTCTCCTCCAAATCTCGATGCAATGGATTTTCCAGCTCTTTCTATGCAAGAGAGTCAGAATGCTACATCCAAGTATGCT ATCGACGATGTCCAACAAAGTACAAATTCATATCAATCTCCTGAGAAGGAGAACATGCTCTTGTTTAAGTCTGGTGCATCCTTTTTTTCGAGAGGTGCAA CTGATTTTGCTTCAGCTGTGAGGAAAATGGCCCTCCAAGATTCCAGTGTGTGGAAATGTGAAAGAAATGGTCCTGCTGATTCTACAGTTGGCTCGAGCAG AAGTTCAAATGTTTTGGCTAGTGCATATAGTAGTGGACAAGGAAGAGGAATGTATGCAGATAGGGTGCTTAATCGCAGTTCTTCACGTGCTGCTCCAACT TGGCTTGAAACTGGTGAAGCAGTAGGACATTTGTATTCTGAGATGCGGGAAGAAGCACGTGATCATGCACGTTTGAGGAATGCGTACTTCGAACAGGCAC GCCAAGCATATCTTATTGGAAATAAAGCGTTAGCAAAGGAATTGAGTGGTAAAGGGCAGCTGCACAATGTGCAGATGAAGGCAGCCCATGGGAAAGCCCA GGATTCAATCTACCGACAAAGGAATCAAGGTGGAGTGGAGACATATGGAAATGGGAGAGGAAATGAGCGGATGATAGACCTTCATGGTCTGCATGTAAGT GAAGCCCTTCATGTGCTGAGGCAAGAGTTGGGTGTTCTGAGGAGCACAGCCAGAGCTGTGGATCAGAGATTGCAGGTTTACATATGCGTTGGGACGGGAC ATCATACCAGAGGTACACGTACACCTGCACGGCTCCCCGTAGCTGTACAGCGCTATCTGCTTGAAGAGGAGGGTCTTGAATACTCAGAAACACAGCCAGG GCTCCTAAGGGTAGTGATATACTGA
AA sequence Show only first row Show all	>Lus10038081 pacid=23163642 polypeptide=Lus10038081 locus=Lus10038081.g ID=Lus10038081.BGIv1.0 annot-version=v1.0 MSHSVAQICRCIRNHRPKEEHVSSKDMTKALMAGCDSPSQPSKKKYVKRIPEKAHLDPPSNRWHIILPHSSLESSIGSSQAIITSIDQQLLKPSLLSVCL IIETKCNYKLVKDFSSKSTALNPNAAEFVPFSLKSSGSTSNSADAAPTSRITTSGAALHRSESSVSNASDDEAHRFWRHQLPDDITPDFKITGEDESHGY GDISFAGLSLNDGGEASRFSTFAGSGYGFNAQREVSPRQGNGSSFSDKMRLAASSYVEDSNAGCLLHSPTKPWDKQFVNTDQLLGNGREMNTSYSENSRQ KFVNDILSEQALMDGSEMNPLEFLASQFPGFAAESLAEVYYANGCDLNLTIEMLIQLELQVDAGLSQSTTSKTLSPPNLDAMDFPALSMQESQNATSKYA IDDVQQSTNSYQSPEKENMLLFKSGASFFSRGATDFASAVRKMALQDSSVWKCERNGPADSTVGSSRSSNVLASAYSSGQGRGMYADRVLNRSSSRAAPT WLETGEAVGHLYSEMREEARDHARLRNAYFEQARQAYLIGNKALAKELSGKGQLHNVQMKAAHGKAQDSIYRQRNQGGVETYGNGRGNERMIDLHGLHVS EALHVLRQELGVLRSTARAVDQRLQVYICVGTGHHTRGTRTPARLPVAVQRYLLEEEGLEYSETQPGLLRVVIY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26280		CID7	CTC-interacting domain 7 (.1)		Lus10038081 [exp]	0	1
AT2G26280		CID7	CTC-interacting domain 7 (.1)		Lus10009796 [exp]	1.0	0.9294
AT2G20790			clathrin adaptor complexes med...		Lus10034013 [exp]	2.8	0.8954
AT3G05350			Metallopeptidase M24 family pr...		Lus10029923 [exp]	3.2	0.8900
AT4G17616			Pentatricopeptide repeat (PPR)...		Lus10037275 [exp]	3.5	0.8890
AT5G49430			WD40/YVTN repeat-like-containi...		Lus10016881 [exp]	4.5	0.8902
AT1G09820			Pentatricopeptide repeat (PPR-...		Lus10032789 [exp]	5.2	0.8772
AT5G64150			RNA methyltransferase family p...		Lus10015342 [exp]	5.3	0.8873
AT4G12010			Disease resistance protein (TI...		Lus10019654 [exp]	5.5	0.8938
AT1G34150			Pseudouridine synthase family ...		Lus10023799 [exp]	6.2	0.8698
AT1G66730		AtLIG6	DNA LIGASE 6 (.1)		Lus10017623 [exp]	7.7	0.8655

Compare expression of checked genes

Lus10038081 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.