Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G21280 86 / 9e-19 hydroxyproline-rich glycoprotein family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009801 [exp] 392 / 2e-136 AT5G21280 90 / 3e-20 hydroxyproline-rich glycoprotein family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G217900 [exp] 123 / 1e-31 AT5G21280 87 / 5e-19 hydroxyproline-rich glycoprotein family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038083 pacid=23163678 polypeptide=Lus10038083 locus=Lus10038083.g ID=Lus10038083.BGIv1.0 annot-version=v1.0 ATGATTTCGGCAGACTCTTCTTCTTCTTCTTCTTCTTCAGTTGCTGTTGATGAAGGCCATAATAGTAATAATAATAATGGTTTGTCGAGGCAGAGTAATA GTGCAGCCAAATTAGAAGAAGTCCAACAGCAGCCTCACAAAAAGCAAGTTAGAAGAAGACTTCACACCAGCAGGCCTTACCAAGAGAGGCTTCTCAATAT GGCTGAGGCTAGAAGGGAGATTGTTACTGCCCTCAAATATCACAGAGCGGCTATGAAACAACAACAACAACAACAACAAGAAGCAGCCAATGAAGGACAA GTATTAGTAGTAGCAAAAAGAAAACAAGAGTCACCACCACCGCAACACCAAATTCTTCCACCTCTTGGGAACCCTATGACGTCATTCCCTTCCAGCTGCA CCCTAAATTACCCTCCTCATCCCCTGCCTCCTCCTCCATGTTCTAATTATTACCCACCTCCTATTCTTTCACCACCTACTCAACTCAACTTCCCACTCCC TAACCAACCCTTGGGTCTGAACCTCAATCTTGATCAGGATTTCAATAACATAAACACTCTTTACCACCACTCTTCTTCATCTTCATGTCCTGCATCATCT TCCTCTTCTCCTCCTTCTCTGATCTCCGTTTCCACTGACGAACAGTATCATCATGAAGCGGTTCAGCTTTCTTCATCAATATCATCCGCTGGAAGAGGAG GATTCCACCAGGTGCTGGATGCTGAAGAGATGGCAGAGATGAGATCTATTGGAGACCAGCATCAGATGGAATGGAATGACACCATGAACTTGGTCAGCTC CGCTTGGTGGTTCAAATTCATGAAGAGCATGGAGCTTCAGGGTCCCCATCTCCTCAACACAGATCACCATCATCATCTACTTGAATTTGATCATGATAAC AATATCACGGACATCCCTCCCTGGCTCAACCCCAATTATAATGATATTGCCTCTTTACACCGTATCAATGATTCTCATGATCCTGCTTTGCCCTGTATGG ACATTGGGGATATAGAAGCGACCGACGGAGAGTGGTGGGCTTGA
AA sequence Show only first row Show all	>Lus10038083 pacid=23163678 polypeptide=Lus10038083 locus=Lus10038083.g ID=Lus10038083.BGIv1.0 annot-version=v1.0 MISADSSSSSSSSVAVDEGHNSNNNNGLSRQSNSAAKLEEVQQQPHKKQVRRRLHTSRPYQERLLNMAEARREIVTALKYHRAAMKQQQQQQQEAANEGQ VLVVAKRKQESPPPQHQILPPLGNPMTSFPSSCTLNYPPHPLPPPPCSNYYPPPILSPPTQLNFPLPNQPLGLNLNLDQDFNNINTLYHHSSSSSCPASS SSSPPSLISVSTDEQYHHEAVQLSSSISSAGRGGFHQVLDAEEMAEMRSIGDQHQMEWNDTMNLVSSAWWFKFMKSMELQGPHLLNTDHHHHLLEFDHDN NITDIPPWLNPNYNDIASLHRINDSHDPALPCMDIGDIEATDGEWWA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G21280			hydroxyproline-rich glycoprote...		Lus10038083 [exp]	0	1
AT1G27180			disease resistance protein (TI...		Lus10023093 [exp]	10.7	0.7081
AT1G77690		LAX3	like AUX1 3 (.1)		Lus10028078 [exp]	10.9	0.7125
AT3G62930			Thioredoxin superfamily protei...		Lus10029441 [exp]	12.4	0.6954
AT1G77690		LAX3	like AUX1 3 (.1)		Lus10025628 [exp]	15.0	0.7014
AT3G62930			Thioredoxin superfamily protei...		Lus10029440 [exp]	23.9	0.6325
AT1G19715			Mannose-binding lectin superfa...		Lus10024291 [exp]	27.1	0.6807
AT2G30800		ATVT-1, HVT1	helicase in vascular tissue an...		Lus10020727 [exp]	27.9	0.7011
AT4G19410			Pectinacetylesterase family pr...		Lus10034762 [exp]	28.6	0.6629
AT2G40390			unknown protein		Lus10010225 [exp]	30.7	0.6578
AT1G06510			unknown protein		Lus10031459 [exp]	31.6	0.6750

Compare expression of checked genes

Lus10038083 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.