Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G43300 2315 / 0 BEN1, ATMIN7 BFA-VISUALIZED ENDOCYTIC TRAFFICKING DEFECTIVE1, HOPM interactor 7 (.1.2) AT1G01960 701 / 0 EDA10 embryo sac development arrest 10, SEC7-like guanine nucleotide exchange family protein (.1) AT3G60860 697 / 0 SEC7-like guanine nucleotide exchange family protein (.1) AT4G38200 689 / 0 SEC7-like guanine nucleotide exchange family protein (.1) AT4G35380 653 / 0 SEC7-like guanine nucleotide exchange family protein (.1) AT1G13980 231 / 6e-61 VAN7, EMB30, GN VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2) AT5G39500 229 / 3e-60 GNL1, ERMO1 ENDOPLASMIC RETICULUM MORPHOLOGY 1, GNOM-like 1 (.1) AT5G19610 211 / 1e-54 GNL2 GNOM-like 2 (.1) AT5G27970 96 / 2e-19 ARM repeat superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009803 [exp] 3208 / 0 AT3G43300 2569 / 0.0 BFA-VISUALIZED ENDOCYTIC TRAFFICKING DEFECTIVE1, HOPM interactor 7 (.1.2) Lus10009300 [exp] 799 / 0 AT3G60860 2741 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Lus10022983 [exp] 737 / 0 AT4G38200 2320 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Lus10001620 [exp] 701 / 0 AT4G38200 2254 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Lus10015863 [exp] 676 / 0 AT4G38200 1880 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Lus10009244 [exp] 482 / 5e-142 AT3G60860 1579 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Lus10036789 [exp] 242 / 3e-64 AT1G13980 2300 / 0.0 VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2) Lus10026627 [exp] 235 / 4e-62 AT1G13980 2395 / 0.0 VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2) Lus10030432 [exp] 231 / 5e-61 AT1G13980 2383 / 0.0 VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G216900 [exp] 2580 / 0 AT3G43300 2728 / 0.0 BFA-VISUALIZED ENDOCYTIC TRAFFICKING DEFECTIVE1, HOPM interactor 7 (.1.2) Potri.002G149200 [exp] 792 / 0 AT3G60860 2689 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Potri.014G070600 [exp] 782 / 0 AT3G60860 2664 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Potri.004G208400 [exp] 753 / 0 AT4G38200 2354 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Potri.009G169800 [exp] 705 / 0 AT4G38200 2335 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Potri.017G078900 [exp] 247 / 9e-66 AT1G13980 2416 / 0.0 VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2) Potri.017G078800 [exp] 213 / 3e-55 AT1G13980 2180 / 0.0 VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2) Potri.018G075300 [exp] 189 / 4e-48 AT5G19610 1796 / 0.0 GNOM-like 2 (.1) Potri.013G035100 [exp] 106 / 1e-22 AT5G27970 2284 / 0.0 ARM repeat superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09324 [flax] [poplar] DUF1981 Domain of unknown function (DUF1981) PF01369 [flax] [poplar] Sec7 Sec7 domain
Representative CDS sequence Show only first row Show all	>Lus10038084 pacid=23163845 polypeptide=Lus10038084 locus=Lus10038084.g ID=Lus10038084.BGIv1.0 annot-version=v1.0 ATGGCTGCTGGGGGTTTCGTTAACCGGGCATTTGATGCCATTCTAAAGGAATGCGCCGGGAAGAAGTTTCCTGATCTTCAAAAATCTATTCAAACTTATC TAGATAATACAAAAGAGATCAATCAGCAACCTAAGGTGGGTGACACCAACGAGACAGAATCATCAGCTGTAGATTCCAGTTCGCATGAGGCAGAAACTGG AGAAAAATCTGTAGGAAGTACAGAAGAGTCACAGAAGGATCCACATACTTCTGAGGAGGTGAAGCCTGTCAGAAGCAGTCGAACTGTTTCCGTTGCCTTG GCAAATGCTGGCAACACCTTAGATGGATCTGAAGCAGAGCTTGTTTTGAACCCCCTTCGATTGGCGTTCGAGTCAAAGAATTTGAAAATCCTGGAGCCAG CCTTGGATTGCCTACATAAACTCATTGCGTATGACCACTTGGAGGGTGATCCCGGTTTAGATGGTGGAAAAAATTCCTCGTTATTTACTGACATTCTGAA TATGGTTTGCAATTGTGTAGATAATTCATCTCCTGACAGTACAATTCTGCAAGTGCTTAAGGTACTCTTAACTGCAGTAGCATCCACGAAACTTAGAGTA CATCTGGAGCCTTTGTTAGGAGTTATCAGAATATGCTACAATATAGCACTTCACAGCAAGAGCCCCATCAATCAAGCAACATCAAAGGCGATGCTTACAC AGATGATCAGCATTGTTTTCAAGAGAATGGAAACAGATCCTTCACAAGTTTCCACATCATCGAGTTCTGGAAACCAAGAATCTACTTCAGCTGCACAATC AGACGTAAAAATTGATGAAAATTCATCTCCAGACCAAAACGAGGAAGGAATGACTCTAGGAGATGCACTCAATCAGGCAAAAGACACATCTCATGCATCT GTTGAGGAACTCCAGAATCTTGCAGGTGGAGCTGATATCAAGGGTTTAGAGGCTGTTCTGGACAAGGCTGTGCACATTGAAGATGGAAAAAAGATAACTC GAGGAATAGATCTTGAAAGTATGAACATTGGTGAACGTGATGCTTTACTTGTATTTCGCACCCTTTGCAAGGCATATCTTTCATATGCTCTGTTACGAGC ATCAGTGTCACAATCACCTGCAATATTCCAGTATGCAACTGGAATCTTCTCTGTGCTTTTGTTGCGGTTCCGAGAGAGTCTTAAAGGTGAAGTTGGCGTC TTCTTTCCGTTGATAGTCTTACGTTCACTGGATGGCCCTGAATCTAATGTTAACCAGAAAACAAGTGTTCTCAGGATGCTCGAGAAGGTGTGCAAGAATT CTCAAATGCTTGTTGATGTTTACGTGAATTATGACTGTGATCTTGAAGCACCCAACTTGTTCGAAAGAATGGTAACTGCTCTGTCAAAACTAGCTCAAGG GACTCAAAGTACAGACCCAAGTACTGTTGCTATGGCTCAGACTACTTTACTCAAAGGTTCATCGCTGCAGTGTCTAGTAAATGTACTTAAATCACTGTTT GACTGGGAAAAAGCATGCCGAGAACATAATAAAAGTAGAAAGGTTCAGGCAGCTCAAGAAGAGCTTTTAGATGGAGATTTTATTGATATAAGAAATAAGG AAGAGGCCAATGGCTTTGAGAAAGCCAAAGCTCATAAATCTACAATGGAAGCTGCCATCTCCGAGTTCAATAGGAAACCATCAAAGGGAATAGAATATTT GATAGCCAATAAGTTAGTGGAAAGTAAGCCTGCTTCAGTTGCGCAGTTCCTCAGGAACACTCCTACCTTGAATAAGGCTATGGTGGGAGACTACTTGGGC CAACATGAGGAGTTTCCCCTTGCTGTTATGCATGCTTATGTCGATGCAATGAGCTTTTCTGGAATGAAGTTTCATGCAGCAATTCGCGAGTTTCTGAAAA GCTTCAGACTACCAGGAGAAGCTCAGAAAATTGATCGCATTATGGAGAAATTTGCTGAAAGATATTGTGCTGACAACCCAGGTCTTCTAAAAAATCCAGA TACTGCTTATGTTCTTGCATATGCAGTTATAATGTTGAATACCGATGCACATAATCCAATGGTGTGGCCTAAAATGTCAAAGTCAGATTTCGTAAGGAAC AATGTCATGGATAATGCAGAAGATTGTGCACCAGCAGATTTGCTGGAAGAGATTTATGATTCTATTGTGAAGGACGAGATTAAACTGAAAGATGAAGCAG ATGCTATTGAGAAAAGCAAACACAAACAAGAAGGTGAAGAGAGAGGCCGCCTTGTGAATATTCTAAATCTGGGCATCCCGAAAAAAAAATCATCTAACGA TGTTAAGTCTGAAAGCGAAGCAATCATTAGGCGGACACAGGCATTTTTCCGGAAGCAAGGGGCACGAAGGGGAATTTTTCATACAGTTAAACAGATTGAA ATTGTAAGGCCTATTGTTGAAGCAGTAGGGTGGCCTTTGCTTGCTACCTTCTCCGTGATTATGGAGGAAGCAGAAAATAAACCAAGAGTTGTTGCCTGTA TGGAGGGGTTTAAAGCTATAATATGCATCACATATGTTCTTGGAATGGATACCATGCGCTATGCTTTCCTAACGTCTCTAATCCGATTTACTTTCTTGCA TGCCCCAAGGGACATGCGCAGTAAAAATGTCGAAGCATTACGGACACTACTTTCATTGTGCGACTCAGAAGCTGATTCCATCCAAGACACATGGAATGCA GTTCTGGAGTGCATCTCTCGCCTTGAATATATCACTTCCACACCCGCTATTGCTGCCAGTGTGATGCAGGGGTCAAATCAGATTTCTAAGGACGCTGTTC TTTCCTCCCTGAAAGAGCTGGCTGGGAAGCCTGCTGAACAAGTTTTCATAAATAGTGTTAGATTGCCTGGTACTTCCATAACAGAGTTCTTCACTGCTCT TTGCGGTGTCTCAGCTGAAGAGCTAAAGCAGACACCTGCTCGTGTATTCAGCTTGCAGAAGCTTGTTGAGATCAGCTATTACAACATGTCTCGGATCCGT ATGGTCTGGGCTAAAATATGGTCTGTTCTAGCAAATCATTTTATTTTTGCTGGGAGCCATCAGGAGGAAAAAGTTGCTATGTATGCTATAGATTCTCTGC GACAGCTTGGTATGAAGTATCTGGAACGTGATGAACTTTCAAATTTCACGTTCCAGAATGACATTCTGAAACCATTTGTTGTTCTTATGCGCAATAGTCG AAGCGAATCCATACGAAGCTTAATTGTTGACTGCATTGTGCAGATGATAAAATCTAAAGTGGGAAGTATAAAGTCAGGATGGCATAGTGTTTTCATGATC TTTACAGCTGCCGCAGATGATGAACAAGAGTCTATTGTTGAAAGGGCATTTGAAAATGTTGAACAAGTTATTTTGGAGCACTTCGATCAGGTTGTTGGAG ATTGCTTTATGGACTGCGTGAACAGTCTTATTAGATTTGCAAATAACAAAACCTCTCATCGTATAAGTTTGAAGGCGATTGCACTTCTCCGCATTTGTGA AGATCGGTTAGCAGAGGGTCTCATTCCTGGTGGTGCTTTGAAGCCCATTGATGCTGATGCAACATTTGATGTAACTGAGCACTATTGGTTCCCGATGCTG GCGGGTTTGTCTGACTTAACATTGGATCAAAGACCTGAAGTCAGAAGTTGTGCTTTAGAGGTTCTATTTGATTTACTGAATGAGAGAGGGAGAGATGAGT ATTGCGGCCTTGGTGGGAAGTCGCAGTCCGGACGAGAGAGAGAGAGAGGCGATTGGAGGCGGCCACCTGCTGGACAGAGTGAGAAAGATGAGATGGAGGT GGCCATCGGCTGGACAAGGGAGAGAGAGGAGATGGAGGTTTGTTTCATGCTTCCACCACTGTTGAGCTTACTTCTGGACTGTGCAAAGAAGACTGACCAG ACTGTTGTGTCCATTTCTTTGGGTGCATTGGTGCATCTCATAGAAGTTGGAGGTCATCAGTTTAGTGAGAGTGATTGGGATACATTATTAAAAAGCATAA GGGATGCTTCATACACTACCCAGCCGCTTGAGCTACTTAATGCTGTCGGTTTAGACAACTCAAAAGGCCCGGTAGTGAGAGCTAATCTGGAGGCTGACAC GGGAGACGATTCGGTCAACAATCAGCCTGATGCCAGTGAGAGTGGAAGGGGAACTCCTTTGCCATCCCCAAAGATAGCTCATAGTTCAGGCATTAATGTT AATCCGTCAGTGTTCCTCAATCAGAGTCAAGAGCCAGGGACACAAAATAACGTGGATGGATCAGAGGGTATTCCATCGCCATCAGGAAGAGCTCAGAAAC CTGAAACCTTGCCGCGTACTCAAACTCTAGGCCAAAAAATTATGGGAAACGTGATGGACAATCTTTTCCTCCGTAATCTTACATCCAAATCCAAGTCTCC TTCTGATGCCTCTGCACCATCTTCTCCAGTTAAGGTTCCTGATGCCGCGGGGCCCAATACAAAAGATGAAGAAGAAAGTCCACTGATGGCTGCCATTAGG GGCAAGTGCATCACTCAGTTATTGCTTCTTGGAGCTATTGATGGTATACAGAAAAAGTACTGGAGCAAGTTGGTGGCTCAGCAAAAGGTTGCTATAATGG ATGTTCTGTTATCTATATTAGAATTTGCTGCTTCATACAATTCATCTCCCAGCCTCAGAATGCGTATGCACCATGTTCCTGATGAAAGGCCTCCTCTAAA TCTCCTTCGACAAGAATTAGTCGGTACTAGTGTGTATCTAGACGTTCTACAGAAAACTACTTCAGATTTTGACGCAAACAAGGAGCAGAAAGTGGAATCA AATGCAACCAATGGTTCAAGTCCAACGGGACAACTAGAAGGCATCGCAGAGGAAAAATTGGTTTCATTTTGTGCGCAGGTACTCCGGGATGCATCTGAGC TTCAGTCCGGTGTGGGAGAAACGACGAATATGGATATCCATCGAGTGCTGGAGTTACGTTCACCAATCATTGTTCGGGTGCTTGAAGGAATGTGTTACAT GAACAACCAGATCTTTAAGAGACATATAAGAGAGTTCTATCCGTTGCTGACAAAGCTTGTTTGCTGTGATCAGTTGGATGTACGAGGTGCGCTTGGTGAT CTATTCAGGATGCAATTGAAAGCTCTGGTGCCGCCCTAG
AA sequence Show only first row Show all	>Lus10038084 pacid=23163845 polypeptide=Lus10038084 locus=Lus10038084.g ID=Lus10038084.BGIv1.0 annot-version=v1.0 MAAGGFVNRAFDAILKECAGKKFPDLQKSIQTYLDNTKEINQQPKVGDTNETESSAVDSSSHEAETGEKSVGSTEESQKDPHTSEEVKPVRSSRTVSVAL ANAGNTLDGSEAELVLNPLRLAFESKNLKILEPALDCLHKLIAYDHLEGDPGLDGGKNSSLFTDILNMVCNCVDNSSPDSTILQVLKVLLTAVASTKLRV HLEPLLGVIRICYNIALHSKSPINQATSKAMLTQMISIVFKRMETDPSQVSTSSSSGNQESTSAAQSDVKIDENSSPDQNEEGMTLGDALNQAKDTSHAS VEELQNLAGGADIKGLEAVLDKAVHIEDGKKITRGIDLESMNIGERDALLVFRTLCKAYLSYALLRASVSQSPAIFQYATGIFSVLLLRFRESLKGEVGV FFPLIVLRSLDGPESNVNQKTSVLRMLEKVCKNSQMLVDVYVNYDCDLEAPNLFERMVTALSKLAQGTQSTDPSTVAMAQTTLLKGSSLQCLVNVLKSLF DWEKACREHNKSRKVQAAQEELLDGDFIDIRNKEEANGFEKAKAHKSTMEAAISEFNRKPSKGIEYLIANKLVESKPASVAQFLRNTPTLNKAMVGDYLG QHEEFPLAVMHAYVDAMSFSGMKFHAAIREFLKSFRLPGEAQKIDRIMEKFAERYCADNPGLLKNPDTAYVLAYAVIMLNTDAHNPMVWPKMSKSDFVRN NVMDNAEDCAPADLLEEIYDSIVKDEIKLKDEADAIEKSKHKQEGEERGRLVNILNLGIPKKKSSNDVKSESEAIIRRTQAFFRKQGARRGIFHTVKQIE IVRPIVEAVGWPLLATFSVIMEEAENKPRVVACMEGFKAIICITYVLGMDTMRYAFLTSLIRFTFLHAPRDMRSKNVEALRTLLSLCDSEADSIQDTWNA VLECISRLEYITSTPAIAASVMQGSNQISKDAVLSSLKELAGKPAEQVFINSVRLPGTSITEFFTALCGVSAEELKQTPARVFSLQKLVEISYYNMSRIR MVWAKIWSVLANHFIFAGSHQEEKVAMYAIDSLRQLGMKYLERDELSNFTFQNDILKPFVVLMRNSRSESIRSLIVDCIVQMIKSKVGSIKSGWHSVFMI FTAAADDEQESIVERAFENVEQVILEHFDQVVGDCFMDCVNSLIRFANNKTSHRISLKAIALLRICEDRLAEGLIPGGALKPIDADATFDVTEHYWFPML AGLSDLTLDQRPEVRSCALEVLFDLLNERGRDEYCGLGGKSQSGRERERGDWRRPPAGQSEKDEMEVAIGWTREREEMEVCFMLPPLLSLLLDCAKKTDQ TVVSISLGALVHLIEVGGHQFSESDWDTLLKSIRDASYTTQPLELLNAVGLDNSKGPVVRANLEADTGDDSVNNQPDASESGRGTPLPSPKIAHSSGINV NPSVFLNQSQEPGTQNNVDGSEGIPSPSGRAQKPETLPRTQTLGQKIMGNVMDNLFLRNLTSKSKSPSDASAPSSPVKVPDAAGPNTKDEEESPLMAAIR GKCITQLLLLGAIDGIQKKYWSKLVAQQKVAIMDVLLSILEFAASYNSSPSLRMRMHHVPDERPPLNLLRQELVGTSVYLDVLQKTTSDFDANKEQKVES NATNGSSPTGQLEGIAEEKLVSFCAQVLRDASELQSGVGETTNMDIHRVLELRSPIIVRVLEGMCYMNNQIFKRHIREFYPLLTKLVCCDQLDVRGALGD LFRMQLKALVPP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G43300		BEN1, ATMIN7	BFA-VISUALIZED ENDOCYTIC TRAFF...		Lus10038084 [exp]	0	1
AT3G43300		BEN1, ATMIN7	BFA-VISUALIZED ENDOCYTIC TRAFF...		Lus10009803 [exp]	1.4	0.9710
AT1G31730			Adaptin family protein (.1)		Lus10035684 [exp]	1.7	0.9650
AT1G49340		ATPI4K ALPHA, A...	Phosphatidylinositol 3- and 4-...		Lus10040481 [exp]	2.0	0.9708
AT3G10380		SEC8, ATSEC8	subunit of exocyst complex 8 (...		Lus10038694 [exp]	3.7	0.9582
AT5G24710			Transducin/WD40 repeat-like su...		Lus10040563 [exp]	4.0	0.9636
AT3G08530			Clathrin, heavy chain (.1)		Lus10037845 [exp]	4.2	0.9602
AT5G27970			ARM repeat superfamily protein...		Lus10000943 [exp]	4.8	0.9410
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Lus10008949 [exp]	5.7	0.9530
AT1G49340		ATPI4K ALPHA, A...	Phosphatidylinositol 3- and 4-...		Lus10011285 [exp]	5.7	0.9574
AT2G35110		NAPP, GRL, NAP1	NCK-ASSOCIATED PROTEIN 1, GNAR...		Lus10036217 [exp]	6.0	0.9457

Compare expression of checked genes

Lus10038084 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.