Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33150 1340 / 0 LKR/SDH, SDH lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzyme (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009808 [exp] 717 / 0 AT4G33150 577 / 0.0 lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzyme (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G134300 [exp] 1441 / 0 AT4G33150 1521 / 0.0 lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzyme (.1.2.3) Potri.006G134450 [exp] 321 / 4e-102 AT4G33150 385 / 4e-127 lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzyme (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04455 [flax] [poplar] Saccharop_dh_N LOR/SDH bifunctional enzyme conserved region CL0325 [flax] [poplar] Form_Glyc_dh PF05222 [flax] [poplar] AlaDh_PNT_N Alanine dehydrogenase/PNT, N-terminal domain CL0063 [flax] [poplar] NADP_Rossmann PF03435 [flax] [poplar] Sacchrp_dh_NADP Saccharopine dehydrogenase NADP binding domain CL0063 [flax] [poplar] NADP_Rossmann PF01262 [flax] [poplar] AlaDh_PNT_C Alanine dehydrogenase/PNT, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10038086 pacid=23163847 polypeptide=Lus10038086 locus=Lus10038086.g ID=Lus10038086.BGIv1.0 annot-version=v1.0 ATGTTGGGGAATGGAGTAATTGGGATATTGGGGGAATCGGTGAACAAGTGGGAGAGAAGGGCACCTCTGACCCCATCACACTGCGCGCGCCTTCTTCACA GTGGGGTGGCTCGCATCATTGTGCAGCCTTCAACCAAGCGAATTCACCATGATGCATTGTACCAAGAAGTCGGCTGCCATATATCTGAAGATCTCTCTGA ATGCGGACTCATTGTTGGCATTAAACAACCCAAGCTGGAGATGATCCTTCCTGATCGAGCTTATGCCTTTTTTTCTCACACACACAAAGCTCAGAAAGAA AACATGCTTTTACTTGACAAGATTCTCGCTGAAAGGGTAACACTGTACGATTACGAGCTTATTGTGAAGCCTGATACCGGGAAAAGGAAGCTCGCTTTTG GAAATTATGCTGGCAGAGCCGGACTTGTCGATTTCTTGCATGGCTTAGGCCACAGGTATCTGAGCCTGGGGTATTCCACTCCCTTCCTTTCACTGGGTGC CTCTTATATGTATTCTTCATTGGCTGCTGCTAAAGCTGCTGTCATTTCTGTTGCTGAAGACATTTCTGCTCTTGGATTGCCTTCTGGAATTTGTCCTTTG GTTTTCGTTTTCACTGGCTCCGGAAATGTTTCTCTAGGCGCCCAAGAAATTTTCAAGCTCCTTCCCCACAAATTTGTTGACCCAAGCCAGCTTCCACTAC TCTTTTCACAAGCAAAGGACAATGGTACTCCAACAAAGGCTACCAAGAGACATTTTCATGTCTATGGTTGTGTCGTCACTTCCCAGGACATGGTCCGACA CATTGATCCTTCCAAACTATTTGATAAAGTAGATTATTATGCACATCCAGAACACTACAAACCAGTTTTCCATGAAAGGATAGCCCCATATGCATCTGTT ATCGTGAATTGCATGTACTGGGAAAAAAGATTTCCTCGGCTGTTGAGCACTCAACAAGTTCAAGAACTAATGAGAAACCACTGCCCACTAGTTGGTGTGG CTGATATTACCTGTGACATCGGCGGCTCGTTACAGTTTGTCAACCAAACCACAACCATTGACTCTCCATTCTTCAGATACGATCCAAGAAATAACTCATA CCATTATGATATGGAGGGTAGTGGCATCATCTGCTCATCTGTCGACATTCTTCCAACAGAGTTCGCAAAAGAGGCTTCCCAACATTTTGGAAATATACTG TCAGAATTTGTTCGTAGTTTGGCTTATACAACCGACATTAAGACTTTACCAGCAGATTTGAAGAGAGCTTGCATCACCCATGGAGGAAAGCTTACTTCGC TATATGAATATATTCCACGCATCAGAAACTCTGAATCAGAAGAAATACAAGAAAGTTCAACAAATTCAAACTCTGGCAGGAAGAATTTCAATATATCGGT ATCTCTTAGTGGTCACTTATTCGATAAATTCCTCATAAATGATGCATTGGATATCATTGAAGCGAAAGGTGGCTCCTTCCGCTTGGTTAAATGTCAAGTT GGTCAAAGTACCAAGGAAGCATCCTTCTCTGAACTGCTAGTTGAGGCCGATGACAGAGCAGTTCTCGACCAGATTATAGATTCTTTAACGTCTCTTGCTA ATAGAGATAAACATCAAGGAGATGTGGGAAGCCAAAAACATAATATTTCTCTCAGAGTTGGTGAGATCCAGGAGAATGACTACAAGAAGGAATATAATGG AAGAATAAAACGTTCAGTTCTTATTATTGGGGCTGGCCGAGTATGTCGACCAGCTGCCGAGTTCTTGGTATCAGTTGGGAGCAATGCAGCCTCCAGCTGG TATCAAACATGTCTGGATTCTGATGAAAGAAATGATATTGAAGTAACTGTCGCATCCCTCCTCATAAAAGATGCACAAGAGATCACTGAGGGTATTCCTA ATGCCACAGCAGTTCAACTTGATGTGTCAGATCATGAAAGCCTTTCCAGGTTCATCTCGGAGGCTGAGGTCGTTATTAGCTTACTGCCTGCTAGTTTTCA TGTAATTGTAGCAAACGAGTGCATAAAGCTGAAGAAGCACCTTGTTACTGCTAGCTATGTTGATGACTCCATGTCATCATTGGATACAAAAGCGAAGGCT GCTGGTGTCGCCATCCTTGGGGAGATGGGACTGGATCCTGGAATTGATCATATGATGGCAATGAAGATGATCAATGAAGCTCGTATGCGTAACGGGAGAA TAAAGTCTTTTACCTCTTACTGTGGAGGACTTCCTTCCCCAGCTGCTGCCAATAACCCTTTGGCTTATAAATTCAGTTGGAGCCCTGCAGGAGCCATCCG AGCAGGGCGCAATCCTGCCACCTACAGATCTAATGGTGAAATTATACATGTTGCTGGTGATGATCTCTATGATTCAGCTGCTCGTTTCAGGATTCCAGAC CTCCCAGCTTTTTCCTTGGAATGCCTTCCTAACCGTGACTCTCTCGTTTACGGGACGCTATATGGAATCCAAGACGAAGCTTTAACCATCTTTCGGTTTG GCAAAATAATGGCAACACTAGCTAAAATGGGACTTTTCAGTCATGAATGTCGTCCCATTCTTGTGCAAGGAGGAGCAAGACCAACGTTCCAAATGTTTTT ATGTGATGTTCTGGGAATTAAGGACGATAAGCCCCTTGGAGAGCAGGATATTGCTGAAAGGATAACGAAACTTGGACATTCCAAGGACCTAGGAGCTGCA ACCATGGTAGCCAAGACATTAATACATTTACGGCTTGATGAGCAGAGTGAAGTTCCAGGCACATGCAAGACTGCATTTGATGTTGCTTGCTTCCGGATGG AAGAAAGGTTGGCCTATTCGAGCAATGAACAGGATATGGTGCTTTTGCATCATGAGGTGGAGGTGGAATTTCCTGATGGAAAACTTGCAGAAACTCATAA AGGCACTTTACTGGAATTTGGGAATAGCAAGGAAAGCAGAATCACTACTGCCATGGCTCTCACCGTTGGTGTGCCTGCAGCTGTTGGAGCTCTGCTGTTA TTGGAGAACAAAATCAAGAGCAGAGGCGTTATGCGGCCGATTGAACAAGAAGTCTATGAGCCGGCACTGAAGATATTGCAAGCTGTTGGCATCAAGTTCA TTGAGAAGATCAATTAG
AA sequence Show only first row Show all	>Lus10038086 pacid=23163847 polypeptide=Lus10038086 locus=Lus10038086.g ID=Lus10038086.BGIv1.0 annot-version=v1.0 MLGNGVIGILGESVNKWERRAPLTPSHCARLLHSGVARIIVQPSTKRIHHDALYQEVGCHISEDLSECGLIVGIKQPKLEMILPDRAYAFFSHTHKAQKE NMLLLDKILAERVTLYDYELIVKPDTGKRKLAFGNYAGRAGLVDFLHGLGHRYLSLGYSTPFLSLGASYMYSSLAAAKAAVISVAEDISALGLPSGICPL VFVFTGSGNVSLGAQEIFKLLPHKFVDPSQLPLLFSQAKDNGTPTKATKRHFHVYGCVVTSQDMVRHIDPSKLFDKVDYYAHPEHYKPVFHERIAPYASV IVNCMYWEKRFPRLLSTQQVQELMRNHCPLVGVADITCDIGGSLQFVNQTTTIDSPFFRYDPRNNSYHYDMEGSGIICSSVDILPTEFAKEASQHFGNIL SEFVRSLAYTTDIKTLPADLKRACITHGGKLTSLYEYIPRIRNSESEEIQESSTNSNSGRKNFNISVSLSGHLFDKFLINDALDIIEAKGGSFRLVKCQV GQSTKEASFSELLVEADDRAVLDQIIDSLTSLANRDKHQGDVGSQKHNISLRVGEIQENDYKKEYNGRIKRSVLIIGAGRVCRPAAEFLVSVGSNAASSW YQTCLDSDERNDIEVTVASLLIKDAQEITEGIPNATAVQLDVSDHESLSRFISEAEVVISLLPASFHVIVANECIKLKKHLVTASYVDDSMSSLDTKAKA AGVAILGEMGLDPGIDHMMAMKMINEARMRNGRIKSFTSYCGGLPSPAAANNPLAYKFSWSPAGAIRAGRNPATYRSNGEIIHVAGDDLYDSAARFRIPD LPAFSLECLPNRDSLVYGTLYGIQDEALTIFRFGKIMATLAKMGLFSHECRPILVQGGARPTFQMFLCDVLGIKDDKPLGEQDIAERITKLGHSKDLGAA TMVAKTLIHLRLDEQSEVPGTCKTAFDVACFRMEERLAYSSNEQDMVLLHHEVEVEFPDGKLAETHKGTLLEFGNSKESRITTAMALTVGVPAAVGALLL LENKIKSRGVMRPIEQEVYEPALKILQAVGIKFIEKIN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33150		LKR/SDH, SDH	lysine-ketoglutarate reductase...		Lus10038086 [exp]	0	1
AT4G34890		ATXDH1	xanthine dehydrogenase 1 (.1)		Lus10034306 [exp]	1.0	0.9814
AT3G50210			2-oxoglutarate (2OG) and Fe(II...		Lus10006259 [exp]	1.7	0.9709
AT5G39820	NAC	ANAC094	NAC domain containing protein ...		Lus10007263 [exp]	3.5	0.9707
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10036820 [exp]	4.0	0.9733
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Lus10024941 [exp]	4.1	0.9583
AT1G44170		ALDH4, ALDH3H1	aldehyde dehydrogenase 4, alde...		Lus10029684 [exp]	4.5	0.9651
AT2G40260	GARP		Homeodomain-like superfamily p...		Lus10040945 [exp]	4.6	0.9688
AT5G65790	MYB	AtMYB68	myb domain protein 68 (.1)		Lus10028248 [exp]	5.5	0.9706
AT3G46540			ENTH/VHS family protein (.1)		Lus10040297 [exp]	6.9	0.9704
AT5G47900			Protein of unknown function (D...		Lus10010030 [exp]	7.5	0.9532

Compare expression of checked genes

Lus10038086 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.