Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15080 498 / 8e-175 Protein kinase superfamily protein (.1) AT3G01300 491 / 8e-172 Protein kinase superfamily protein (.1) AT3G28690 481 / 2e-169 Protein kinase superfamily protein (.1.2.3) AT5G01020 436 / 3e-151 Protein kinase superfamily protein (.1) AT2G28930 434 / 1e-150 APK1B protein kinase 1B (.1.2.3) AT1G07570 429 / 8e-149 APK1A Protein kinase superfamily protein (.1.2.3) AT5G02290 427 / 3e-148 NAK Protein kinase superfamily protein (.1.2) AT2G39660 413 / 1e-142 BIK1 botrytis-induced kinase1 (.1) AT2G02800 414 / 2e-142 Kin2, APK2B protein kinase 2B (.1.2) AT3G55450 412 / 2e-142 PBL1 PBS1-like 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006643 [exp] 840 / 0 AT5G15080 495 / 2e-173 Protein kinase superfamily protein (.1) Lus10005255 [exp] 503 / 1e-176 AT5G15080 720 / 0.0 Protein kinase superfamily protein (.1) Lus10030668 [exp] 502 / 4e-176 AT5G15080 723 / 0.0 Protein kinase superfamily protein (.1) Lus10030796 [exp] 481 / 1e-167 AT5G15080 691 / 0.0 Protein kinase superfamily protein (.1) Lus10023794 [exp] 433 / 5e-151 AT5G02290 543 / 0.0 Protein kinase superfamily protein (.1.2) Lus10024391 [exp] 433 / 2e-150 AT5G02290 563 / 0.0 Protein kinase superfamily protein (.1.2) Lus10010835 [exp] 433 / 2e-150 AT5G02290 561 / 0.0 Protein kinase superfamily protein (.1.2) Lus10036762 [exp] 430 / 5e-148 AT5G01020 672 / 0.0 Protein kinase superfamily protein (.1) Lus10012850 [exp] 424 / 2e-146 AT2G02800 614 / 0.0 protein kinase 2B (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G066100 [exp] 716 / 0 AT5G15080 503 / 6e-177 Protein kinase superfamily protein (.1) Potri.018G127300 [exp] 709 / 0 AT3G01300 498 / 5e-175 Protein kinase superfamily protein (.1) Potri.008G194700 [exp] 500 / 1e-175 AT5G15080 671 / 0.0 Protein kinase superfamily protein (.1) Potri.010G033800 [exp] 499 / 2e-175 AT5G15080 669 / 0.0 Protein kinase superfamily protein (.1) Potri.004G129000 [exp] 488 / 4e-171 AT5G15080 659 / 0.0 Protein kinase superfamily protein (.1) Potri.017G077300 [exp] 486 / 5e-170 AT5G15080 690 / 0.0 Protein kinase superfamily protein (.1) Potri.004G123800 [exp] 483 / 6e-169 AT5G15080 694 / 0.0 Protein kinase superfamily protein (.1) Potri.009G031300 [exp] 442 / 4e-154 AT2G28930 603 / 0.0 protein kinase 1B (.1.2.3) Potri.016G143200 [exp] 441 / 3e-153 AT5G01020 655 / 0.0 Protein kinase superfamily protein (.1) Potri.001G240400 [exp] 440 / 3e-153 AT1G07570 590 / 0.0 Protein kinase superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10038087 pacid=23163774 polypeptide=Lus10038087 locus=Lus10038087.g ID=Lus10038087.BGIv1.0 annot-version=v1.0 ATGGAGGAGAACAAGTACTGTGGGTGTTGGGCTGTGCTTAAGCGTAGTGGTGCCAACTGCAGAAAATCCTCCTCCTCCTCCTCTCCCAACGCCATCCCTC GTACTAGCCTTGTTTACGACGCTGCTACAGAGACGAGGTACTTGAACGCCAGCAATCGAGAATTGTGTGGCCCGAACCAAGAAAAGCTGTCATCTGATAA CAAAACGGATCCGCCATTGCTGCAGTTCAGCTTCCAGGAACTGAAATCGGCTACTGGGAATTTCAGGGCGGACAGCATCCTGGGAGAAGGAGGGTTCGGG TATGTGTTTAAAGGTTGGATAGAGGAGAACGGGACCAGTCCGGCCAAACCCGGTTCCGGAATCACCGTCGCCGTTAAGAGCTTGAAGCCTGACGGACTCC AAGGCCATAGAGAATGGGTGGCTGAAGTGGATTTTCTGGGGCAGCTACATCACCCAAATTTGGTTAAGCTGATTGGTTACTGCATTGAAGATGACCAAAG GGTACTTGTTTATGAGTTCATGACTAGGGGCAGCCTTGAAAACCATCTATTCAGAAGGACGATTCCTCTACCATGGTCAAACAGGATAAAGATAGCCATT GGAGCAGCAAAAGGGCTGTCATTTCTCCATGGAGGACCTGAACCTGTTATCTATAGAGACTTCAAGACTTCTAACATTTTGCTTGATTCTGAGTACAACG CAAAGCTGTCAGATTTCGGACTGGCGAAAGCAGGTCCTCAGGGAGACAAAACTCACGTCTCTACAAGGGTTGTTGGCACTTACGGATATGCTGCTCCAGA GTACGTAATGACAGGTCACTTGACATCAAAGAGTGATGTATACAGCTTTGGAGTTGTAATCCTAGAGATATTAACAGGGAGGAGATCAATGGACAAGAAG AGACCAAGTGGAGAGCAAAACCTTGTCTCCTGGGCAAGACCATACTTAGCAGACAAAAGGAAGCTCTACCAATTAGTAGACCCTCGTCTTGAACTGAACT ACTCCATCAAGGGTGTCCACAAGGTCTCTCAGCTTGCATACACCTGCCTTAGCAGGGACCCCAAATCCCGACCCACAATGGATGAAGTGGTGAAGCTCCT TTCTCCATTGCAGGACCTCAATGACCTTGCCATATTGTCTAATCACCACCATTTTAGGATCATGTCTCAACAAGGCAGGAGGAAGAACAAGTCATCTAAT CATGATCATCAAGGGATTCATAATGCTAATCATCATCTGCTTCGTAACTATAATCACAATGGTTCCTCCCAGAACTTGATCATTAGGGATTCTCCCCTCA ATGCTTCTGGAAAGCAAAGATGCAAGTGA
AA sequence Show only first row Show all	>Lus10038087 pacid=23163774 polypeptide=Lus10038087 locus=Lus10038087.g ID=Lus10038087.BGIv1.0 annot-version=v1.0 MEENKYCGCWAVLKRSGANCRKSSSSSSPNAIPRTSLVYDAATETRYLNASNRELCGPNQEKLSSDNKTDPPLLQFSFQELKSATGNFRADSILGEGGFG YVFKGWIEENGTSPAKPGSGITVAVKSLKPDGLQGHREWVAEVDFLGQLHHPNLVKLIGYCIEDDQRVLVYEFMTRGSLENHLFRRTIPLPWSNRIKIAI GAAKGLSFLHGGPEPVIYRDFKTSNILLDSEYNAKLSDFGLAKAGPQGDKTHVSTRVVGTYGYAAPEYVMTGHLTSKSDVYSFGVVILEILTGRRSMDKK RPSGEQNLVSWARPYLADKRKLYQLVDPRLELNYSIKGVHKVSQLAYTCLSRDPKSRPTMDEVVKLLSPLQDLNDLAILSNHHHFRIMSQQGRRKNKSSN HDHQGIHNANHHLLRNYNHNGSSQNLIIRDSPLNASGKQRCK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15080			Protein kinase superfamily pro...		Lus10038087 [exp]	0	1
AT3G55370	DOF	OBP3, AtDof3. 6	OBF-binding protein 3 (.1.2.3)		Lus10005956 [exp]	2.2	0.9115
AT2G42690			alpha/beta-Hydrolases superfam...		Lus10017975 [exp]	3.2	0.8995
AT5G14430			S-adenosyl-L-methionine-depend...		Lus10022291 [exp]	5.1	0.8496
AT1G79640			Protein kinase superfamily pro...		Lus10026108 [exp]	5.7	0.8863
AT1G67720			Leucine-rich repeat protein ki...		Lus10037051 [exp]	5.7	0.9018
AT2G23700			Protein of unknown function, D...		Lus10011308 [exp]	6.2	0.8617
AT1G67790			unknown protein		Lus10034566 [exp]	6.5	0.9113
					Lus10022875 [exp]	7.7	0.8677
AT3G22400		ATLOX5, LOX5	Arabidopsis thaliana lipoxygen...		Lus10025857 [exp]	8.5	0.9017
AT4G20270		BAM3	BARELY ANY MERISTEM 3, Leucine...		Lus10038382 [exp]	9.0	0.8882

Compare expression of checked genes

Lus10038087 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.