Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07490 141 / 3e-42 AtCML3, AGD11 calmodulin-like 3, ARF-GAP domain 11 (.1) AT1G05990 135 / 3e-40 RHS1 ,RHS2 ROOT HAIR SPECIFIC 1, EF hand calcium-binding protein family (.1) AT4G03290 135 / 5e-40 EF hand calcium-binding protein family (.1) AT2G43290 130 / 3e-37 MSS3 multicopy suppressors of snf4 deficiency in yeast 3, Calcium-binding EF-hand family protein (.1) AT4G12860 128 / 3e-37 UNE14 unfertilized embryo sac 14, EF hand calcium-binding protein family (.1) AT3G59440 126 / 6e-36 Calcium-binding EF-hand family protein (.1) AT5G37770 100 / 2e-26 CML24, TCH2 TOUCH 2, CALMODULIN-LIKE 24, EF hand calcium-binding protein family (.1) AT1G73630 99 / 9e-26 EF hand calcium-binding protein family (.1) AT1G18210 96 / 1e-24 Calcium-binding EF-hand family protein (.1.2) AT5G21274 85 / 1e-20 ACAM-6, CAM6 calmodulin 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006644 [exp] 357 / 3e-126 AT3G07490 148 / 3e-45 calmodulin-like 3, ARF-GAP domain 11 (.1) Lus10027701 [exp] 245 / 5e-82 AT2G43290 153 / 2e-46 multicopy suppressors of snf4 deficiency in yeast 3, Calcium-binding EF-hand family protein (.1) Lus10039986 [exp] 215 / 2e-70 AT3G07490 132 / 3e-39 calmodulin-like 3, ARF-GAP domain 11 (.1) Lus10009564 [exp] 137 / 1e-40 AT3G07490 233 / 7e-80 calmodulin-like 3, ARF-GAP domain 11 (.1) Lus10018012 [exp] 106 / 1e-28 AT1G18210 195 / 2e-64 Calcium-binding EF-hand family protein (.1.2) Lus10020389 [exp] 98 / 3e-26 AT3G07490 130 / 1e-40 calmodulin-like 3, ARF-GAP domain 11 (.1) Lus10009059 [exp] 98 / 4e-25 AT1G18210 197 / 3e-65 Calcium-binding EF-hand family protein (.1.2) Lus10009127 [exp] 97 / 5e-24 AT1G66400 147 / 2e-44 calmodulin like 23 (.1) Lus10031345 [exp] 94 / 1e-23 AT1G18210 196 / 1e-64 Calcium-binding EF-hand family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G127100 [exp] 205 / 2e-66 AT3G07490 132 / 6e-39 calmodulin-like 3, ARF-GAP domain 11 (.1) Potri.006G065900 [exp] 204 / 1e-65 AT3G07490 131 / 1e-38 calmodulin-like 3, ARF-GAP domain 11 (.1) Potri.002G239100 [exp] 143 / 4e-43 AT3G07490 248 / 8e-86 calmodulin-like 3, ARF-GAP domain 11 (.1) Potri.007G128600 [exp] 134 / 9e-39 AT2G43290 218 / 3e-72 multicopy suppressors of snf4 deficiency in yeast 3, Calcium-binding EF-hand family protein (.1) Potri.017G029700 [exp] 132 / 3e-38 AT3G07490 192 / 1e-62 calmodulin-like 3, ARF-GAP domain 11 (.1) Potri.012G048200 [exp] 108 / 3e-29 AT1G18210 188 / 8e-62 Calcium-binding EF-hand family protein (.1.2) Potri.015G039500 [exp] 103 / 2e-27 AT1G18210 189 / 6e-62 Calcium-binding EF-hand family protein (.1.2) Potri.017G126200 [exp] 99 / 1e-25 AT1G66400 155 / 5e-49 calmodulin like 23 (.1) Potri.004G089400 [exp] 96 / 8e-25 AT1G66400 157 / 7e-50 calmodulin like 23 (.1) Potri.010G107100 [exp] 89 / 2e-21 AT1G24620 220 / 2e-73 EF hand calcium-binding protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10038088 pacid=23163656 polypeptide=Lus10038088 locus=Lus10038088.g ID=Lus10038088.BGIv1.0 annot-version=v1.0 ATGATTTCCGCCGCTCTATTACTCCTACTTCTCTTTCTCGCCGGTCTCCTCAATCTCAATTCCTATCTCCCTTCAAAGAAGCTCTACGCCTGGCTCCACT CCCTCTTCCTCCCCCGCGCCGTCATCACGGCAGCAGAGAAGGTCAAATCCGCTCCATTACAAGCTGAATCAAGCAAGGCTGTTACTACTGTTGCCAAGAG TGATCAGATCAGTAAGAAGAAGACTGAGGACACTGACGATGAGATGACGAGCGTGTTTGCCACGTTCGACAAAAACGGGGACGGATTCATCACGAAGCAG GAACTGAAGGAGTCGCTGAAGAACATACGGATCATAGTGACAGAGACGGAGGTAGAGGAGATGGTAGTGAAGGTAGATTCAAACGGAGATGGTTTAATCG ATTTGGAGGAGTTCAAGATCCTGTGCCGGAAAATATTGTCCGGCGGAGAAGAGATTAGTAGCGGTCGAGGTGCGGCGGGGGAAGGAGGAGGAGGTGAATT GAAGAAGGCGTTCGATGTATTCGACAGGAACAAGGATGGATTGATAACGGTGGAGGAGCTTTGGTGGGTGCTGTCATCGTTAGGGTTGAAGGAAGGGAAG AGGATTGAGGATTGCAAGGAGATGATAAGGAGAGTTGACGTCGACGGGGACGGGATGGTTAACTTCGACGAGTTCAAGATGATGATGAGAAGTGGGGGCG GTAAGCTTCTTCTTCCCGTATTCTGA
AA sequence Show only first row Show all	>Lus10038088 pacid=23163656 polypeptide=Lus10038088 locus=Lus10038088.g ID=Lus10038088.BGIv1.0 annot-version=v1.0 MISAALLLLLLFLAGLLNLNSYLPSKKLYAWLHSLFLPRAVITAAEKVKSAPLQAESSKAVTTVAKSDQISKKKTEDTDDEMTSVFATFDKNGDGFITKQ ELKESLKNIRIIVTETEVEEMVVKVDSNGDGLIDLEEFKILCRKILSGGEEISSGRGAAGEGGGGELKKAFDVFDRNKDGLITVEELWWVLSSLGLKEGK RIEDCKEMIRRVDVDGDGMVNFDEFKMMMRSGGGKLLLPVF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07490		AtCML3, AGD11	calmodulin-like 3, ARF-GAP dom...		Lus10038088 [exp]	0	1
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Lus10039686 [exp]	5.2	0.9175
AT1G71740			unknown protein		Lus10029742 [exp]	5.5	0.9176
AT5G49960			unknown protein		Lus10013455 [exp]	5.7	0.9225
AT2G45670			calcineurin B subunit-related ...		Lus10036544 [exp]	8.4	0.8756
AT5G57850			D-aminoacid aminotransferase-l...		Lus10011382 [exp]	11.3	0.9144
AT2G34930			disease resistance family prot...		Lus10021973 [exp]	12.0	0.8949
AT5G21060			Glyceraldehyde-3-phosphate deh...		Lus10003073 [exp]	16.0	0.8895
AT5G13500			unknown protein		Lus10036037 [exp]	17.4	0.9048
AT2G33460		RIC1	ROP-interactive CRIB motif-con...		Lus10021974 [exp]	18.0	0.8942
AT2G35270	AT-hook	GIK, 2-ATH, AHL...	GIANT KILLER, Predicted AT-hoo...		Lus10030966 [exp]	22.7	0.9090

Compare expression of checked genes

Lus10038088 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.