Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09030 115 / 4e-30 BTB/POZ domain-containing protein (.1) AT5G41330 39 / 0.001 BTB/POZ domain with WD40/YVTN repeat-like protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004834 [exp] 195 / 3e-62 AT3G09030 283 / 4e-93 BTB/POZ domain-containing protein (.1) Lus10002501 [exp] 194 / 1e-60 AT2G38110 330 / 2e-109 glycerol-3-phosphate acyltransferase 6 (.1) Lus10017502 [exp] 40 / 0.0006 AT5G41330 546 / 0.0 BTB/POZ domain with WD40/YVTN repeat-like protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G112900 [exp] 125 / 3e-34 AT3G09030 525 / 0.0 BTB/POZ domain-containing protein (.1) Potri.003G129300 [exp] 42 / 9e-05 AT5G41330 579 / 0.0 BTB/POZ domain with WD40/YVTN repeat-like protein (.1) Potri.001G102300 [exp] 41 / 0.0003 AT5G41330 568 / 0.0 BTB/POZ domain with WD40/YVTN repeat-like protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038089 pacid=23163883 polypeptide=Lus10038089 locus=Lus10038089.g ID=Lus10038089.BGIv1.0 annot-version=v1.0 ATGGCTGTTGATGTGAAGGAGTCGACTTTGTTCAAGGTTTGTTCCAAATCTGGCGATTTAGAGGTGGCTGATATCCGTTATTTGGGTGATGATCCGTGGG TGTATTTAGAAGATAAGAATCCCAACCTGAGACACACTGGTGAGCCTGGAATCAGCAACGTATTGCATTGCTATAAGGGTCAGGTTTTTGTGGGAAGAGA TGGAGCCTTGGAAGTTATCATCTCCTGTAATCACTCTGGTGATCCTGGAATCAGCAACGTATTGCATTGCTATAAGGGTCAGGTTTTTGTGGGAAGAGAT GGAGCCTTGGAAATTTGGTCGAGAGTTCAGGAGAAGGAGGGAAGCGGAGGAGTGGAAGTGGAAGGAGGCAGAGTGATTACAGGAGATGATAAGTACAGAA GGAATTTTGTGGATAGTGTGGAGGATTTAGAGAAAGGGATCATCAGGAAGATTGAAGGAGGTGGGAATCGGTTGTTCGTTAGTAGGGAAGAGGTTGAGGG GATTGAAGTTTGGGAAGGTTCCAATCTTCCTACTACAGTCTCAGTTTTGTCGCAATGTTTGGTAGCAGTGCAGAAGCTGTGA
AA sequence Show only first row Show all	>Lus10038089 pacid=23163883 polypeptide=Lus10038089 locus=Lus10038089.g ID=Lus10038089.BGIv1.0 annot-version=v1.0 MAVDVKESTLFKVCSKSGDLEVADIRYLGDDPWVYLEDKNPNLRHTGEPGISNVLHCYKGQVFVGRDGALEVIISCNHSGDPGISNVLHCYKGQVFVGRD GALEIWSRVQEKEGSGGVEVEGGRVITGDDKYRRNFVDSVEDLEKGIIRKIEGGGNRLFVSREEVEGIEVWEGSNLPTTVSVLSQCLVAVQKL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09030			BTB/POZ domain-containing prot...		Lus10038089 [exp]	0	1
AT4G12240	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10032208 [exp]	10.9	0.6015
AT4G18425			Protein of unknown function (D...		Lus10015395 [exp]	12.5	0.5912
AT3G23600			alpha/beta-Hydrolases superfam...		Lus10000668 [exp]	36.9	0.5552
AT2G27080			Late embryogenesis abundant (L...		Lus10025548 [exp]	65.0	0.5404
AT2G26450			Plant invertase/pectin methyle...		Lus10002976 [exp]	66.3	0.5412
AT4G26055			unknown protein		Lus10011865 [exp]	123.6	0.4924
AT2G30860		GLUTTR, ATGSTF7...	glutathione S-transferase PHI ...		Lus10029815 [exp]	136.8	0.4874

Compare expression of checked genes

Lus10038089 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.