Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52580 932 / 0 RabGAP/TBC domain-containing protein (.1.2) AT4G28550 149 / 5e-39 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT2G20440 143 / 6e-37 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT4G27100 142 / 2e-36 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT5G54780 140 / 6e-36 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT5G41940 134 / 4e-33 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT3G49350 130 / 8e-32 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT5G53570 124 / 8e-30 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT5G24390 120 / 1e-28 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT3G59570 107 / 7e-24 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006646 [exp] 1293 / 0 AT5G52580 939 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Lus10039968 [exp] 1037 / 0 AT5G52580 867 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Lus10027697 [exp] 561 / 0 AT5G52580 526 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Lus10027698 [exp] 418 / 3e-142 AT5G52580 299 / 3e-96 RabGAP/TBC domain-containing protein (.1.2) Lus10022905 [exp] 143 / 9e-37 AT4G28550 621 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10024920 [exp] 142 / 3e-36 AT4G28550 618 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10023237 [exp] 140 / 3e-35 AT5G41940 571 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10008872 [exp] 138 / 2e-34 AT5G41940 582 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10022356 [exp] 132 / 2e-32 AT3G49350 650 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G066300 [exp] 1041 / 0 AT5G52580 925 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Potri.018G127500 [exp] 1001 / 0 AT5G52580 917 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Potri.005G227400 [exp] 149 / 3e-39 AT4G28550 616 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.015G007400 [exp] 136 / 9e-34 AT5G41940 596 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.012G024500 [exp] 132 / 2e-32 AT3G49350 601 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.001G084300 [exp] 131 / 4e-32 AT5G41940 603 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.003G146300 [exp] 131 / 7e-32 AT5G41940 624 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.011G135300 [exp] 123 / 9e-30 AT4G27100 667 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Potri.001G419100 [exp] 121 / 4e-29 AT5G54780 663 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.017G023200 [exp] 109 / 9e-25 AT2G43490 795 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3.4.5.6)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0266 [flax] [poplar] PH PF12068 [flax] [poplar] PH_RBD Rab-binding domain (RBD) CL0266 [flax] [poplar] PF00566 [flax] [poplar] RabGAP-TBC Rab-GTPase-TBC domain
Representative CDS sequence Show only first row Show all	>Lus10038091 pacid=23163810 polypeptide=Lus10038091 locus=Lus10038091.g ID=Lus10038091.BGIv1.0 annot-version=v1.0 ATGTTAGAGACGGAGCTCCACGATTTGTCCGACGACGCTGATTACGCCGCCTCTATTCAGCAAGGATCAACGAGCATGATGTTGACGAGAAATGAGAGCG GGAACAGAAGCATGTCCAGCGAACCGGAAGGTGCTGAGCTTATATATTTGAAAGATAATGTTACCATCCATCCGAAACAGTTCGCTTCTGAGAGGATCAG CGGAAGGTTGAAGCTGGTTAAGCACGGCTCTTCAGTGTTTATGACGTGGATCCCATACAAAGGACAAAGCTACAGTGCTAGGCTTTCTGACAAAGATAAG AGCCTTTACACAATCAGAGCTGTCCCTTTCTCGGATGTCCGATCAATTCGTCGACACACCCCAACTTTTGGGTGGCAATACATAATTATTGTTTTGTCCA CAGGACTTGCATTTCCTCCTCTTTATTTCTACAATGGAGGAGTAAAGGAGTTCTTTGCTACACTGAAGCAGCATGTTCTGATTGTCAGGTCATTGGAAGA TGCAAATGTATTCCTTGTGAATGATTTTCAGAATCCGCTGCAGAGAACTTTATCATCGTTGGAGATGCCAGGAGCAGTTTCAATGGGAAGCATAACAAGT ACACCTGATTCAGGTGAACAATTGTCATCCTTGACAGATGGCGGTAAAAGTGGTGATGATATTGCTCAAAGAATCTTGAGGTACAAGCAGAAAGCTAATG ATCCTGGCCGTGATCTTTCTATCCATGTACTTGAAAAATTCTCTCTGGTGACCAAATTTGCCCGAGAAACATCAACACAGCTGTTCCGTGAAAATAGCAA TGGGTTTAGTGCTCTGGATACAAAAAACTATAGCCTCCCTGGGCATGATAGTCCTTACAAGGAAGAACATGAAAAGAAGAAAGTTCCTGAAGAAATTAAT GTACCCGCAGATCCTCTGGAGTTTGATAAACTGGCACTTGTATGGGGAAAGCCACAACAGTCTCCTTTGGGGTCCGAAGAGTGGGCCGCTTTCTTGGACT CGGAAGGGCGAATCATGGATTCGAAAGCCTTGAGAAAAAAGATATTTTACGGAGGAGTGGAGCACACAATACGCAAAGAGGTTTGGGCATTTTTACTGGG ATATCATGACTATGAATCAACTTATGCAGAGAGGGAAAACCTTAAGACAATTAAGAGAACGGAGTATCTGACGCTAAAGCAACAGTGGCAGAGTATCTCC TCTGAACAAGCCAAGAAATTTACAAAATTCAGGGAACGGAAGGGGCTGATCGACAAAGATGTGGTGCGGACTGATAGATCACTACCTTATTATGATGGAG ATAGTAACCCGAATGTGAAGATTCTACGCGATATCCTATTGACATATTCATTCTATAACTTTGATCTCGGATACTGTCAGGGCATGAGTGATCTACTGTC TCCGATTTTGTATGTAATGGAGGATGAATCAGAATCATTTTGGTGTCTTGTGGCGTTGATGGAACGACTTGGGCCAAATTTTAACCGGGACCAAAATGGC ATGCACTCTCAACTGTTTGCACTTTCTAAGTTGGTAGAATTGTTAGACAGCCCGTTGCACAACTATTTCCAGCAAAGAGATTGCTTGAATTACTTCTTTT GCTTCCGTTGGCTTTTGATACAGTTCAAGAGGGAGTTCGAATATGAGCAAATTATGTGCCTATGGGAGGTTCTATGGACACATCATCTGTCCGAGCATCT GCACCTATACTTGTGTGTTGCCATCTTGAAGCGGTACCGCAGCAAAATTTTTGGGGAGCAGATGGATTTCGACACCTTGTTGAAGTTCATTAACGAGCTA AGCGGCCATATCGACCTGGATTCAATTCTTAGGGACGCGGAGGCTCTATACATATATGCTGGTGAGAATGGCGCTGCTTGCATTCCACCAAGTACGCCTC CTTCACTACCTATCGAGAATGAGAATAGCATGCTCTATTCACTCGAGGATGAAGTTCTGTAA
AA sequence Show only first row Show all	>Lus10038091 pacid=23163810 polypeptide=Lus10038091 locus=Lus10038091.g ID=Lus10038091.BGIv1.0 annot-version=v1.0 MLETELHDLSDDADYAASIQQGSTSMMLTRNESGNRSMSSEPEGAELIYLKDNVTIHPKQFASERISGRLKLVKHGSSVFMTWIPYKGQSYSARLSDKDK SLYTIRAVPFSDVRSIRRHTPTFGWQYIIIVLSTGLAFPPLYFYNGGVKEFFATLKQHVLIVRSLEDANVFLVNDFQNPLQRTLSSLEMPGAVSMGSITS TPDSGEQLSSLTDGGKSGDDIAQRILRYKQKANDPGRDLSIHVLEKFSLVTKFARETSTQLFRENSNGFSALDTKNYSLPGHDSPYKEEHEKKKVPEEIN VPADPLEFDKLALVWGKPQQSPLGSEEWAAFLDSEGRIMDSKALRKKIFYGGVEHTIRKEVWAFLLGYHDYESTYAERENLKTIKRTEYLTLKQQWQSIS SEQAKKFTKFRERKGLIDKDVVRTDRSLPYYDGDSNPNVKILRDILLTYSFYNFDLGYCQGMSDLLSPILYVMEDESESFWCLVALMERLGPNFNRDQNG MHSQLFALSKLVELLDSPLHNYFQQRDCLNYFFCFRWLLIQFKREFEYEQIMCLWEVLWTHHLSEHLHLYLCVAILKRYRSKIFGEQMDFDTLLKFINEL SGHIDLDSILRDAEALYIYAGENGAACIPPSTPPSLPIENENSMLYSLEDEVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52580			RabGAP/TBC domain-containing p...		Lus10038091 [exp]	0	1
AT1G78680		ATGGH2	gamma-glutamyl hydrolase 2 (.1...		Lus10028143 [exp]	9.5	0.8044
AT1G02120		VAD1	VASCULAR ASSOCIATED DEATH1, GR...		Lus10028209 [exp]	9.9	0.7868
AT5G53330			Ubiquitin-associated/translati...		Lus10014944 [exp]	11.0	0.8201
AT4G28880		CKL3	casein kinase I-like 3 (.1)		Lus10043233 [exp]	12.0	0.8084
AT1G63420			Arabidopsis thaliana protein o...		Lus10024519 [exp]	16.1	0.8201
AT5G49830		EXO84B	exocyst complex component 84B ...		Lus10034843 [exp]	18.0	0.7672
AT5G66880		SNRK2-3, SNRK2....	SUCROSE NONFERMENTING 1 \(SNF1...		Lus10019641 [exp]	19.0	0.7405
AT1G49710		ATFUT12, FUCTB,...	fucosyltransferase 12 (.1)		Lus10019855 [exp]	19.6	0.8065
AT4G28880		CKL3	casein kinase I-like 3 (.1)		Lus10011113 [exp]	20.1	0.8019
AT5G07120		SNX2b	sorting nexin 2B (.1)		Lus10026403 [exp]	24.0	0.7827

Compare expression of checked genes

Lus10038091 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.