Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G13290 533 / 0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1.2) AT3G27540 446 / 6e-157 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) AT1G12990 437 / 3e-153 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) AT5G14480 431 / 4e-151 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) AT1G67880 431 / 5e-151 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) AT3G01620 409 / 2e-142 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) AT3G26445 77 / 4e-17 beta-1,4-N-acetylglucosaminyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043257 [exp] 673 / 0 AT2G13290 538 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1.2) Lus10019400 [exp] 670 / 0 AT2G13290 538 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1.2) Lus10032088 [exp] 433 / 5e-152 AT3G27540 676 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) Lus10035231 [exp] 433 / 6e-152 AT3G27540 672 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) Lus10003666 [exp] 431 / 5e-151 AT3G27540 670 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) Lus10022281 [exp] 429 / 2e-150 AT3G27540 675 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) Lus10006474 [exp] 427 / 2e-149 AT1G12990 657 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) Lus10006475 [exp] 427 / 7e-149 AT1G12990 654 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G127900 [exp] 581 / 0 AT2G13290 530 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1.2) Potri.006G066700 [exp] 580 / 0 AT2G13290 526 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1.2) Potri.001G343600 [exp] 441 / 7e-155 AT3G27540 627 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) Potri.010G046900 [exp] 433 / 1e-151 AT1G12990 675 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) Potri.008G186000 [exp] 431 / 3e-151 AT1G12990 691 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04724 [flax] [poplar] Glyco_transf_17 Glycosyltransferase family 17
Representative CDS sequence Show only first row Show all	>Lus10038093 pacid=23163757 polypeptide=Lus10038093 locus=Lus10038093.g ID=Lus10038093.BGIv1.0 annot-version=v1.0 ATGGCACCACGAACTATTCGCACATCGACAAGACGGTTACCGAGGAAGCTTGTGTTTATGATATTGTTGATATTTATACCACTTTCTGTGATTGGAATCA TCACTCATTTCCAGACAATATCGTATATTTTCCGCCCACTTTGGGACAAACCACCTCCACCATTTCAGAGGATTCCTCACTACTATGCGGAGAACGTGCC GATGCAACACCTTTGCAGCCTCCACGGCTGGAGCATCCGAAGTGAACCTCGACGTATCTTTGATGGCATCATCTTTAACAACGAGTTGGACCTTCTCGAG ATAAGATGGAGGGAGCTAGGTCCTTATGTAACCAAGTTTGTGATCCTTGAGTCCAACACCACCTTCACAGGCTTACAGAAGCCTCTATTCTTTGAGTCAA ACAGGCATCGTTTCGACTTTGCAGCAGACAAGGTTGTCCATGGTATATTCTCCGGTCGAGTGGCTGAACCGGGATCACAGGAAGACCCGTTTGTGCTAGA GTCAGAACAACGAGCTTTCATGAATGGGTTGCTCCGAAGTGCCGGGGTTTCCAACGGTGACTTGGTCATCATGTCTGATACAGACGAGATCCCAAGCCCT CACACAGTGAAACTACTTCAATGGTGTGATGGGATACCACCAATTCTGCATCTTGAGCTAAGGAACTACCTTTACTCGTTTGAATTCCCGGTGGATTACA ACCATTGGAGATCAACGATCCAGATGTATGGACCTTGGACGAGGTACAGACATTCACGGCAATCGGATGTGATACTATCAGATGCTGGGTGGCATTGTAG CTTTTGCTTTCGGAAGCTGGAGGATTTTGTGTTCAAGATGACTGCATACAGCCACGCAGACAGGGTAAAGAAGCAGGAATTCTTGAATCACGAGAGGATA CAGAGACTAATATGTAAAGGGGATGACTTGTTTGATATGCTACCAGAAGAGTATACGTTTAAAGAGCTAATAAAGAAGATGGGATCTATCCCACAATCAG CTTCTGGGGTTCATCTTCCTGCTTATCTGATAGAGAATGCACAAAAGTTTAGGTTTCTACTTCCTGGAAGCTGTTTAAGAAACGAGTGA
AA sequence Show only first row Show all	>Lus10038093 pacid=23163757 polypeptide=Lus10038093 locus=Lus10038093.g ID=Lus10038093.BGIv1.0 annot-version=v1.0 MAPRTIRTSTRRLPRKLVFMILLIFIPLSVIGIITHFQTISYIFRPLWDKPPPPFQRIPHYYAENVPMQHLCSLHGWSIRSEPRRIFDGIIFNNELDLLE IRWRELGPYVTKFVILESNTTFTGLQKPLFFESNRHRFDFAADKVVHGIFSGRVAEPGSQEDPFVLESEQRAFMNGLLRSAGVSNGDLVIMSDTDEIPSP HTVKLLQWCDGIPPILHLELRNYLYSFEFPVDYNHWRSTIQMYGPWTRYRHSRQSDVILSDAGWHCSFCFRKLEDFVFKMTAYSHADRVKKQEFLNHERI QRLICKGDDLFDMLPEEYTFKELIKKMGSIPQSASGVHLPAYLIENAQKFRFLLPGSCLRNE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G13290			beta-1,4-N-acetylglucosaminylt...		Lus10038093 [exp]	0	1
AT1G52190			Major facilitator superfamily ...		Lus10038616 [exp]	4.4	0.8984
AT5G42760			Leucine carboxyl methyltransfe...		Lus10000713 [exp]	7.1	0.8983
AT1G18265			Protein of unknown function, D...		Lus10035638 [exp]	9.4	0.8944
AT3G25250		AtOXI1, OXI1, A...	oxidative signal-inducible1, A...		Lus10009592 [exp]	10.6	0.8761
AT2G40100		LHCB4.3	light harvesting complex photo...		Lus10040191 [exp]	11.4	0.8977
AT3G47860		CHL	chloroplastic lipocalin (.1)		Lus10035734 [exp]	12.2	0.8502
AT2G19770		PRF5	profilin 5 (.1)		Lus10037591 [exp]	15.5	0.8502
AT1G29390		COR413IM2, COR3...	COLD REGULATED 314 INNER MEMBR...		Lus10025378 [exp]	15.9	0.8807
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10015288 [exp]	22.6	0.8899
AT4G16650			O-fucosyltransferase family pr...		Lus10007792 [exp]	25.7	0.8528

Compare expression of checked genes

Lus10038093 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.