Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15880 1427 / 0 WSIP2, TPR4 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) AT1G80490 1407 / 0 TPR1 TOPLESS-related 1 (.1.2) AT1G15750 1397 / 0 TPL, WSIP1 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) AT3G16830 1125 / 0 TPR2 TOPLESS-related 2 (.1) AT5G27030 1098 / 0 TPR3 TOPLESS-related 3 (.1.2) AT2G25420 238 / 2e-66 transducin family protein / WD-40 repeat family protein (.1) AT4G15900 58 / 2e-08 PRL1 pleiotropic regulatory locus 1 (.1) AT3G49660 56 / 4e-08 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT3G16650 57 / 7e-08 Transducin/WD40 repeat-like superfamily protein (.1) AT2G43770 56 / 9e-08 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006650 [exp] 1909 / 0 AT1G15750 1593 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Lus10043258 [exp] 1755 / 0 AT3G15880 1776 / 0.0 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) Lus10019401 [exp] 1704 / 0 AT1G15750 1596 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Lus10020668 [exp] 1088 / 0 AT5G27030 1717 / 0.0 TOPLESS-related 3 (.1.2) Lus10029876 [exp] 1087 / 0 AT5G27030 1722 / 0.0 TOPLESS-related 3 (.1.2) Lus10011905 [exp] 994 / 0 AT3G15880 920 / 0.0 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) Lus10011481 [exp] 890 / 0 AT1G15750 2011 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Lus10023119 [exp] 839 / 0 AT1G15750 1959 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Lus10001924 [exp] 646 / 0 AT1G15750 1006 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G066800 [exp] 1606 / 0 AT3G15880 1689 / 0.0 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) Potri.018G128000 [exp] 1598 / 0 AT3G15880 1650 / 0.0 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) Potri.003G030000 [exp] 1421 / 0 AT1G80490 1922 / 0.0 TOPLESS-related 1 (.1.2) Potri.001G200500 [exp] 1348 / 0 AT1G15750 1922 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Potri.013G081300 [exp] 1205 / 0 AT1G15750 1540 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Potri.005G021700 [exp] 1162 / 0 AT5G27030 1714 / 0.0 TOPLESS-related 3 (.1.2) Potri.013G012100 [exp] 1146 / 0 AT5G27030 1698 / 0.0 TOPLESS-related 3 (.1.2) Potri.018G023900 [exp] 1138 / 0 AT1G80490 1420 / 0.0 TOPLESS-related 1 (.1.2) Potri.006G257900 [exp] 1135 / 0 AT1G80490 1466 / 0.0 TOPLESS-related 1 (.1.2) Potri.018G023800 [exp] 944 / 0 AT1G80490 1195 / 0.0 TOPLESS-related 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10038094 pacid=23163819 polypeptide=Lus10038094 locus=Lus10038094.g ID=Lus10038094.BGIv1.0 annot-version=v1.0 ATGTCTTCGCTCAGCAGGGAGCTTGTGTTTCTCATACTTCAATTCCTGGACGAAGAGAAATTTAAGGAGTCTGTACAAAATTTTTGTGCGTTTGTTTGGG TTAGATTGGAGCAGGAGTCAGGGTTTTACTTCAACATGCGGCATTTTGAGGACATGGTAACAAATGGGGAGTGGGAGGAGGTGGAGAAGTATTTATCCGG GTTCACTAAGGTTGATGATAACAGATATTCCATGAAGATTTTCTTTGAGATCCGAAAGCAGAAGTATCTCGAGTCTTTGGACAAGAGAGATCGTGCCAAA GCTGTCGAAGTTTTGGTGAAAGACTTGAAAGTGTTTGCAGCATTTAACGAGGAGCTGTTTAAGGAAATTACGCAGCTCTTGACATTAGAAAACTTCAGTT TAAATTGGCAACATCAGCTGTGTAAGAATCCAAGGCCTAATCCTGATATAAAGACCTTATTCGTGGACCACAGCTGTGGTGGGCAGCCAAATGGTTCCCG AGCCCCATCCCCCGTCACCAATTCCTTAATGGGTGCAATGCCAAAGCAAGGAGGCTTCCCGCCACTTGGTGCTCATGGTCCGTTCCAAGCTGCACCTGGT ACTTTGCCAACATCTCTTGCTGGTTGGATGGCAAATCCATCTGCTGTCCCTCATCCATCAGTTTCTGCTGGACCCATTAGCTTGGGTGGACCTAATAATG CAGCAGGCATGTTGAAGCGTCCCAGGACCCCTCCTTCAAACAACCCAGCTATGGATTATCATACAGCAGATTCTGAGCATGTTTTAAAAAGATCAAGACC ATTTGGGATGTCCGAAGAGGTTAATAATAATCTACCAGTAAATGTTCTGCCTGTCGCATATGCTGGCCATAGCCATGGGCAGACTTCCTACTCATCTGAT GATCTACCTAAGACTTCTGTTATGGCTTTAAATCAAGGCTCAGCAGTGAAGAGTATGGATTTTCATCCATTGCAGCAGATACTACTTCTTGTTGGAACAA ACATGGGTGATGTTATTGTATGGGAACTCGGTAGCCGTGAGAGGATTGCTTTAAAGAATTTTAAGGTTTGGGACCTTGGAGCTTGTTCGGGCGGGCTACA GGCTTCTCTTGCTAATGATTATACAGCATCAGTGAACCGCGTCATGTGGAGTCCGGATGGAACTCTGTTTGGTATTGCTTACTCTAAGCACATAGTTCAT ATCTATTCATACCATGGCGGTGATGATATAAGAAATCACCTTGAGATTGAAGCTCACGTTGGAAGTGTTAATGATCTTGCTTTCTCGTATCCCAATAAGC AACTGTGTGTGGTAACTTGCGGAGAAGACAGAGTGATTAAGGTTTGGGATGCAGTTACTGGCAATAAGCAGTTTACTTTTGAAGGACATGAAGCACCTGT ATATTCAGTTTGCCCACATCACAAAGAAACTATTCAGTTTATATTTTCAACTGCAACTGACGGAAAGATTAAAGCATGGTTGTATGATCTCATGGGATCC AGAGTTGATTATGACGCCCCAGGACATTCATCAACCACTATGGCATATAGTGCTGATGGAACAAGATTGTTCTCATGTGGGACAAACAGGGATGGAGAAT CACATTTGGTTGAATGGAATGAAAGTGAAGGTGCAGTTAAGCGGCGGTATACTGGTCTTGGGAAGCGATCAGTTGGAGTTGTACAATTTGATACCACTAA GAACCGGATTTTGGCTGCTGGTGATGAGTTCATGCTCAAATTCTGGGACATGGACAATGTTAGCTTATTAACAACTATAGATGCAGACGGTGGACTGCCG GCCCCTTCAATGCCAAATTTTGCAGCTGCCAATCCAAATCCTGGGACTAGCAATGGGAATCCAGCTGCTCCTGTTCCACCCATTGTCGGAATGATTAGTG ACAATCGAGCATTGCCTGATGTCAAACCTAGAATTGCTGATGAATCAGTGGAAAAGTCTAGGATCTGGAAGGCGGCCGAAATAAATGAACCATCACAGTG TCGATCTCTGAGGCTTCTTGACAATTTGACTGCAATGAGGGTGGCCAGATTGATGTATACAAATTCTGGAATGGCAATATTAGCATTAGCATCTAATGCT GTTCATAAGCTCTGGAAATGGCAGAGAAACGATAGAAACGCTACTGGAAAGGCTACTGCTAGCGTTGCACCACAATTATGGCAACCATCTAGTTTGATGA CCAATGATATGAGTGATAAGAACCCAGAAGATGCTGTTCCATGCTTTGCCCTATCGAAGAATGATTCTTATGTTATGTCAGCTTCAGGAGGAAAGATATC CCTTTTCAATATGATGACATTTAAGACGATGACAACATTCATGCCCCCACCACCAGCTGCAACATTCCTGGCATTTCACCCTCAAGACAATAACATCATT GCTATAGGGATGGAGGATTCTTCTATCCAAATTTATAATGTCAGGGTTGATGAGGTTAAAACCAAGTTGAGCGGTCATCAGAAAAGAATCACTGGCCTCG CCTTCTCTAACACGCTAAATATACTCGTGTCTTCTGGAGCCGACTCACAGTTATGTGTGTGGAATACAGATGGATGGGAAAAGCAGGTTAGTAAGTTCTT GCAAATTCCATCCGGTCGTCCAACCTCTCCTCTTTCGGATACTCGTGTTCAATTTCATATTGATCAGACTCATTTGCTTGCGGTTCACGAGACACAAATA GCACTATACGAAGCTCCTAAACTAGAATGTCTCAAACAGTGGTTCCCCCGAGATGTGAATCCCATCACACATGCCACGTATTCATGTGATAGCCAATCGA TATATGTTGGTTTTGAAGATGGAAGTGTGGGTGTTCTTACAGCGCCATCTCTCAGACTGCGATGCAGAATAGGGTCCAATGCATACTTACCTCCTAACCC GAGCTTGAGGGTGTATCCCCTAGTAATTGCAGCACACCCGTCAGAATCCAACCAGTTCGCATTGGGATTAACAGATGGCGGAGTTCACGTGCTAGAGCCT TTAGAATCAGAAGGGAAATGGGGCACATCACCTCCAGTTGAGAATGGTGCTGGACCTAGCAATTCAGGTGCAGCCGGTTCAGAACAACAACAACAAGCTC AAAGATAA
AA sequence Show only first row Show all	>Lus10038094 pacid=23163819 polypeptide=Lus10038094 locus=Lus10038094.g ID=Lus10038094.BGIv1.0 annot-version=v1.0 MSSLSRELVFLILQFLDEEKFKESVQNFCAFVWVRLEQESGFYFNMRHFEDMVTNGEWEEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLESLDKRDRAK AVEVLVKDLKVFAAFNEELFKEITQLLTLENFSLNWQHQLCKNPRPNPDIKTLFVDHSCGGQPNGSRAPSPVTNSLMGAMPKQGGFPPLGAHGPFQAAPG TLPTSLAGWMANPSAVPHPSVSAGPISLGGPNNAAGMLKRPRTPPSNNPAMDYHTADSEHVLKRSRPFGMSEEVNNNLPVNVLPVAYAGHSHGQTSYSSD DLPKTSVMALNQGSAVKSMDFHPLQQILLLVGTNMGDVIVWELGSRERIALKNFKVWDLGACSGGLQASLANDYTASVNRVMWSPDGTLFGIAYSKHIVH IYSYHGGDDIRNHLEIEAHVGSVNDLAFSYPNKQLCVVTCGEDRVIKVWDAVTGNKQFTFEGHEAPVYSVCPHHKETIQFIFSTATDGKIKAWLYDLMGS RVDYDAPGHSSTTMAYSADGTRLFSCGTNRDGESHLVEWNESEGAVKRRYTGLGKRSVGVVQFDTTKNRILAAGDEFMLKFWDMDNVSLLTTIDADGGLP APSMPNFAAANPNPGTSNGNPAAPVPPIVGMISDNRALPDVKPRIADESVEKSRIWKAAEINEPSQCRSLRLLDNLTAMRVARLMYTNSGMAILALASNA VHKLWKWQRNDRNATGKATASVAPQLWQPSSLMTNDMSDKNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNII AIGMEDSSIQIYNVRVDEVKTKLSGHQKRITGLAFSNTLNILVSSGADSQLCVWNTDGWEKQVSKFLQIPSGRPTSPLSDTRVQFHIDQTHLLAVHETQI ALYEAPKLECLKQWFPRDVNPITHATYSCDSQSIYVGFEDGSVGVLTAPSLRLRCRIGSNAYLPPNPSLRVYPLVIAAHPSESNQFALGLTDGGVHVLEP LESEGKWGTSPPVENGAGPSNSGAAGSEQQQQAQR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80490		TPR1	TOPLESS-related 1 (.1.2)		Lus10038094 [exp]	0	1
AT5G14620		DMT7, DRM2	domains rearranged methyltrans...		Lus10032136 [exp]	3.7	0.8479
AT1G01950		AtKINUb, ARK2	Arabidopsis thaliana KINESIN U...		Lus10009241 [exp]	4.5	0.8805
AT2G06210		VIP6, ELF8	VERNALIZATION INDEPENDENCE 6, ...		Lus10033440 [exp]	7.2	0.8639
AT3G46920			Protein kinase superfamily pro...		Lus10040006 [exp]	7.3	0.8713
AT3G46920			Protein kinase superfamily pro...		Lus10019577 [exp]	8.9	0.8507
AT3G44530		HIRA	homolog of histone chaperone H...		Lus10004893 [exp]	11.8	0.8794
AT4G30935	WRKY	ATWRKY32, WRKY3...	WRKY DNA-binding protein 32 (....		Lus10022150 [exp]	12.0	0.8178
AT1G29370			Kinase-related protein of unkn...		Lus10007338 [exp]	14.1	0.8151
AT1G80260		EMB1427	embryo defective 1427, Spc97 /...		Lus10018892 [exp]	15.2	0.8052
AT2G02480		STI	STICHEL, AAA-type ATPase famil...		Lus10042401 [exp]	17.1	0.8491

Compare expression of checked genes

Lus10038094 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.