Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42160 657 / 0 BRIZ1 BRAP2 RING ZnF UBP domain-containing protein 1, zinc finger (ubiquitin-hydrolase) domain-containing protein (.1) AT2G26000 391 / 4e-132 BRIZ2 BRAP2 RING ZnF UBP domain-containing protein 2, zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2) AT2G27160 69 / 3e-14 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006651 [exp] 949 / 0 AT2G42160 674 / 0.0 BRAP2 RING ZnF UBP domain-containing protein 1, zinc finger (ubiquitin-hydrolase) domain-containing protein (.1) Lus10035023 [exp] 380 / 1e-127 AT2G26000 631 / 0.0 BRAP2 RING ZnF UBP domain-containing protein 2, zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2) Lus10021683 [exp] 320 / 3e-104 AT2G26000 565 / 0.0 BRAP2 RING ZnF UBP domain-containing protein 2, zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G128100 [exp] 711 / 0 AT2G42160 621 / 0.0 BRAP2 RING ZnF UBP domain-containing protein 1, zinc finger (ubiquitin-hydrolase) domain-containing protein (.1) Potri.005G110500 [exp] 451 / 2e-155 AT2G26000 605 / 0.0 BRAP2 RING ZnF UBP domain-containing protein 2, zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2) Potri.007G063900 [exp] 427 / 2e-146 AT2G26000 600 / 0.0 BRAP2 RING ZnF UBP domain-containing protein 2, zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2) Potri.009G090100 [exp] 41 / 0.0006 AT2G14830 193 / 3e-64 Regulator of Vps4 activity in the MVB pathway protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF02148 [flax] [poplar] zf-UBP Zn-finger in ubiquitin-hydrolases and other protein CL0221 [flax] [poplar] RRM PF07576 [flax] [poplar] BRAP2 BRCA1-associated protein 2
Representative CDS sequence Show only first row Show all	>Lus10038095 pacid=23163876 polypeptide=Lus10038095 locus=Lus10038095.g ID=Lus10038095.BGIv1.0 annot-version=v1.0 ATGTTCATCCTCCGAGTTCACTCCGTCGACGCAAACCACCCTCTCAATCTCGAGGAGAACCCATTTTCCGTCGTCTCCTCCGCGGCTAACCCTACCCCGA ATCCTAAGTACAGCGAAAGGAGAGGCGTCGTTCATCTTTATCGAAGCGCATCACGCAGTTCATTGCCGAACCCTACCTCTCGCTCCACGTCTCTGTTCGT CGTCGCCGCCCCCAACTACTTGTCCGCCGACGATTTTGTCCGCTTCTGCGAGTCTCACATCGAAAATGTGCTCGAGCTCGTCTTCATCAGAAATGATGGG ATGGAGGATCGGTATAGTGTGTTGATCAATCTTGATTCCCAGTCCGCAGCTGATATATTCTATAATAACTTCAATGGAAAGCGGTTCTCGCCTGCTGAGG CAGAGGTATGCCATATCCTGTTCGTATTGTCACTCGGCTACACTGAGTCCGCTGAAGAGGCCAGCACTCCACCAACCGGGTTCACAGAGTTGCCTACTTG TCCAATATGCCTTGAAAGATTGGACCCTGACACTAGTGGAATACTCAGTACTCTCTGTGATCATTCATTTCAATGTTCTTGCACTTCGAAGTGGACGTAT TTGTCTTGTCAGGTCTGCAGACTTTGTCAGCAGGAGGATGAGAAACCAACTTGTGCTGTATGCGGGACATTGGAAAATATGTGGGTTTGTCTGCTGTGTG GCTTTGTGGGTTGTGGAAGATATAAAGAAGGGCACGCTATAAGGCATTGGCAATATACAGAGCATCGTTACTCTCTTGATTTAAGGACACAACAAATTTG GGACTACGTTGGCGATAACTATGTCCATCGTCTAAACCAGTCAAAAGCTTATGACAAGTCAATTGATGTGAATGCCAACTGTAGATCAATGGAAGGAGAT TGTGGAACCTGCGAGTGTAGTGAGGATTCTGGATTTGGTGGTGCTCTCTATAGCAGCAAAGTTGAAGCAATTGTAGATGAATACAACCGTCTCCTTGCAA CACAGATGGAGACTCAAAGACAGTACTACGAATCTCTAATTACAGAAGCCAAAAGTAAACAAGAAACGTCAATCTCAGAAGGAATAGAGGAGGCTTTGAA ATCAACAATGCAGGACCTCCAGAATAAATTGGATAAGTGTGAACTAGAAAAGAATGCAGTGACAGAAACTAACAAAGGTCTCATAAAGGATGAACAAACT TGGCGTAAAAAGGCTAAAGAAATAGAAGAAAGGGAAGCATCATCATTAAGGTGCAAGGATGAGATGATACTCGATCTAGAAGAACAGATCCGAGATCTAA CAGTTTACATGGAAGCACAGAAGACGTTGAATAAGATGACGGATCCAAGTGATATCCGGGAAGGGACGTTGTTGCCCGTGCCTTTGAAGGAATCATCTCC AGCTGAAACCAAAAGGAATGCAAAGTTGAGCAGAAGACGACATTAA
AA sequence Show only first row Show all	>Lus10038095 pacid=23163876 polypeptide=Lus10038095 locus=Lus10038095.g ID=Lus10038095.BGIv1.0 annot-version=v1.0 MFILRVHSVDANHPLNLEENPFSVVSSAANPTPNPKYSERRGVVHLYRSASRSSLPNPTSRSTSLFVVAAPNYLSADDFVRFCESHIENVLELVFIRNDG MEDRYSVLINLDSQSAADIFYNNFNGKRFSPAEAEVCHILFVLSLGYTESAEEASTPPTGFTELPTCPICLERLDPDTSGILSTLCDHSFQCSCTSKWTY LSCQVCRLCQQEDEKPTCAVCGTLENMWVCLLCGFVGCGRYKEGHAIRHWQYTEHRYSLDLRTQQIWDYVGDNYVHRLNQSKAYDKSIDVNANCRSMEGD CGTCECSEDSGFGGALYSSKVEAIVDEYNRLLATQMETQRQYYESLITEAKSKQETSISEGIEEALKSTMQDLQNKLDKCELEKNAVTETNKGLIKDEQT WRKKAKEIEEREASSLRCKDEMILDLEEQIRDLTVYMEAQKTLNKMTDPSDIREGTLLPVPLKESSPAETKRNAKLSRRRH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42160		BRIZ1	BRAP2 RING ZnF UBP domain-cont...		Lus10038095 [exp]	0	1
AT1G43850		SEU	SEUSS transcriptional co-regul...		Lus10029756 [exp]	2.0	0.8560
AT5G40270			HD domain-containing metal-dep...		Lus10022228 [exp]	3.5	0.8217
AT3G13060		ECT5	evolutionarily conserved C-ter...		Lus10033335 [exp]	5.1	0.8376
AT1G43850		SEU	SEUSS transcriptional co-regul...		Lus10042785 [exp]	7.7	0.8084
AT3G21215			RNA-binding (RRM/RBD/RNP motif...		Lus10033388 [exp]	9.0	0.7725
AT1G31440			SH3 domain-containing protein ...		Lus10033292 [exp]	9.2	0.7786
AT5G49580			Chaperone DnaJ-domain superfam...		Lus10017085 [exp]	11.3	0.8206
AT3G17470		ATCRSH	Ca2+-activated RelA/spot homol...		Lus10028191 [exp]	12.7	0.7986
AT5G13430			Ubiquinol-cytochrome C reducta...		Lus10028417 [exp]	12.8	0.7667
AT4G26750		EXT-like	extensin-like, hydroxyproline-...		Lus10012781 [exp]	13.9	0.7837

Compare expression of checked genes

Lus10038095 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.