Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G33530 1558 / 0 Transducin family protein / WD-40 repeat family protein (.1.2.3) AT2G26610 1435 / 0 Transducin family protein / WD-40 repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019403 [exp] 1885 / 0 AT3G33530 1732 / 0.0 Transducin family protein / WD-40 repeat family protein (.1.2.3) Lus10043261 [exp] 1865 / 0 AT3G33530 1707 / 0.0 Transducin family protein / WD-40 repeat family protein (.1.2.3) Lus10006655 [exp] 1260 / 0 AT2G26610 1476 / 0.0 Transducin family protein / WD-40 repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G128400 [exp] 1715 / 0 AT3G33530 1613 / 0.0 Transducin family protein / WD-40 repeat family protein (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038096 pacid=23163772 polypeptide=Lus10038096 locus=Lus10038096.g ID=Lus10038096.BGIv1.0 annot-version=v1.0 ATGTCTCTCGCCGGGTCGCCACCACTTCCCGCGGCGGAATCCTCCTCCTCCCCGTGGGAATGCATGCTCCCGGGCCCTCCTTCACGTAACAACTTCGGCT CCGTCGACATTTCCCCTTCCGGCCTCCTCGCTTTCCCTACCGGATCTTCAATCTCCGTCATCGACTCTTGCTCTCTCCAGCACATCTCAACCATCCCTCT CCCCGCTCCACTATCTCCTTCTTCCGCTTCTTCCGCCTCCGTCGCTCTCTCTCCCTTTGTCACCTCTGTTCGGTGGACTCCCCTCCCTCTCCGCCGCGAT CTCCTTGTCACCGAGCCTTCTTCATCTCACTTGATCCTCGCTGCCGGAGACCGCCACGGCCGGATTGGTCTAGTCGATTTCCGCCGCAGATCAGTGCTCC TCTGGCTCGATTCGGATTTGAGCTCCAAATGTGGTATCCAGGACCTCTGCTGGATCCTTTGTCGGCCTGACTTGTATGTTCTCGCGGCCATCTCAGGTCC TTCTACTCTCTCCTTATACAACAACAGTTCGGGTCATTGTTTCTTCAAGTATGACGCCACTCCTGAGTACCTTTCTTGTATACGTCGTGATCCTTTTGAT CCTCGACATTTTTGCGTGATCGGTCTCAAAGGATTTCTGTTGTCGATCAAATTGCTGGGAGAGGCAGACGATGAGGTTGTGGTGAAGGAACTTCGAATTC CTAATGACTGTACCGAGTTTCTGAAGCTCGAGAGAGATCCCGCGGGAGGATCTTCATCCTCTGCGCCTGCATCGGCCGCCTTTCCTCGATACTCCGTGAA GATGACCTTTTCGCCGCAGTGCAATCACATTCTGCTCGTAACGTTCCCTAGGGAGCTGGTCGTGTTCGATTTGCAGTATGAGACTACTCTTTTCAATTCT TTACTGCCTAGAGGATGCCCTAAGTTTCTGAATGTGTTGACGGATCCGAATAGCGGCTTCTTGTATTGTGCGCATTTGGATGGGAAGCTCAGCGTTTGGA GACGAAAAGAAGGAGAGCAGGTCCACATACTGTGTGTGATTGAAGAGTTAATGCCCTCAATTGGAAGTTCTGTTCCTTCTCCTGCATTACTTGCTATAGC CATCTCTCCATCAGAGTCCACTCTCCAGAATGTCGTCAAATTGTATCGGGATGCACCTAATACTCCCTCGTCCCAGGATTTTAACAATCATTTTGATTTC TATGACGAGTCCCTTCTTCTATCTAAGACACACATGATATCAATTTCTGATGATGGCAAACTATCTAATTGGCTTTTAACTGCTGAAGAGATAGTAGAAA GGGAAGTCGATGTTATCCCATATGCAGAAGATGATGCCAACTTTATAGCGTCTACTGATGGTAAAAATCTGGAAAGAAACAAGCAACAGGAAAATGCGAA TGGCAGTAAAGGTCGGTTGTCATCCGTCTCCTGTGAAGATCATGCAACAGTCAAGATATGCTTGGTTGGACAGCTGCAGCTTCTTTCTTCATCTTTAACT ATGATCGCGGTGCCATCTCCTTCTCTAACAGCTACTTTAGCTCGTGGTGGCAATTATCCTGCTGTAGCTGTTCCGCTTGTTGCTTTAGGAACTCAGACTG GAATGATTGACATCGTGGATGTCTCTGCCAATGCTGTAGCAGCAAGTGTTTCTGTTCATACAAGCTCAGTCCGTGGTCTACGATGGCTTGGGAACTCTAG ATTGGTTTCGTTTTCTTATAATCAGACTAATGAAAAAACTGGAGGTTATGCCAATAAGCTTGTTGTGACTTGTGTTAGAAGTGGTCTTAACAGACCATTT CGTCTTCTACACAAGCCAGAGCGTGCACCGATTAGAGCCTTAAGGACTTCGTCATCTGGAAGGTACCTCCTTATTTTATTTCGTGATGCGCCAGTGGAAG TTTGGGCAATGACCAAAAGTCCTGTTATGCTTAGATCATTAGCTCTTCCATTCACAGTGCTGGAATGGACCCTTCCAACTGTTCCAAAGCCAGTCCAGAA TGGTCCTTCTAGGCAATCGTCATTTAACGATGGTACACCTAAAGCATCTGATGGACCACCCACCCCCAATTCGTCAGAATCTACTGTGAGTTCAGATACA TCTCAAGACGAGGCTGCAGAAAGCTTTGCATTTGCACTTGTTAATGGAGCACTCGGAGTATTCGAGGTTCATGGGCGAAAGATTCGAGATTTTAGACCAA AATGGCCTTCTTCTTCATTTGTTGCATCCGATGGACTAATCACAGCAATGGCCTACCGTTTGCCTCACGTGGTAATGGGGGACAGAACGGGAAATATAAG GTGGTGGGATGTAACAACTGGGTCTTCTTCATCATTTAACACTCACCGAGAGGGGATTCGGAGGATTAAGTTCTCACCTGTAGTTCCTGGAGACAAGAGT AGAGGACGGGTTGCTGTCCTTTTCTATGACAACACCTTCTCTGTATTTGATCTTGATTCACCAGACCCATTAGCAAATTCCCTTTTGCAGCCTCAGTTTC CTGGAACTCTTGTAATGGAGCTCGATTGGTTGCCTCTGAGAACTGAAAAACATGACCCATTGGTATTGTGTATTGCCGGGGCTGATGGTAGTTACCGCCT TCTTGAAGTTAACATGAATGATAAAAGACATGGCTTTAGACCTCCACAGTCAATTAAGGAGAGATTCCGCCCTGTGCCTATTTGCTGTCCCATATTGCTG CCTACTCCCCATGCTCTAGCTTTGCGTATGATCTTGCAACTGGGTGTGAAGCCTTCATGGTTCAATACTTCTAGTACGGCCATTGATAGAAGGCCAAACT CAATTCCCGGGGCTTCTTCGTCAGAAGGGGACTTTCGTAGTTACATGATCGATCTACCATCTATTGGTGATTCTGTTGTGCCAGAAATGCTCCTTAAAGT CTTAGAAACATACCGCAAAGAAGGCTGTATACTGGACGACGAAGTAGCAAAATTGTATGCAACAGTGGTCAACAAAGGTTGTGCTGTAAGGTTTGCATTT GCAGCTGCCATTTTTGGTGAAACCGCAGAAGCACTCTTCTGGTTGCAATTGCCTCGTGCTTTAAAGCATTTGATGAGCAAATTGGTCGGTAAAGCTCCAT TAAAGTCTGCTATATCAGCAACAGCGGCAGAGTTGGAAGGTGCAGTTATGCTAACCAGAATTACCTCTAGGGAAAAGGCCCTGGCTAACATGGGGAGTGT AGACTCGCCATGTCTGTGGCAGAGTCACGGTTTGCTAAGATTAATGGCTTTCCAGCAAGAAGAGTTATGGGAGAGTGCCAATGAGCGAATTCCTTGGCAT GAGAAACTCGAGGGAGAAGCAGCTATCCAGAATCAAGTGCATGAGCTTATTACAGTTGGGAACTTAGAAACTGCAGTTAGTTTGTTGCTTTCGACTCCTG CAGAGAGTTCGTTCTTCTACCCAAATGCTTTACGTGCAGTGGCTCTTTCTTCTGCTGTGTCTAACTCTCTCCTCGAACTTGCAGTCAAGGTCGTGGCAGC CAATATGGTCAGGACAGACAGATCACTCGCTGCTACTCATCTACTTTGTGCGGTAGGAAGGCATCAAGAAGCATGTTCTCAGCTGCAAGATGCTGGGTGT TGGACTGATGCTGCAACTCTCGCAGCTACACATTTGAAAGGATCAGATTATGCAAGAGTGCTGCAGAGGTGGGCAGGCCATGTTCTTCACACTGAGCACA ACGTTTGGAGGGCTCTTATTTTGTACGTTGCAGCCGGTGGTTTGCCAGAGGCCCTGGCGGCACTCCGTGAGGCACAACAGCCTGATACAGCAGCAATGTT CATCCTTGCTTGCCGAGAAATCCATGGTGAGATCCTGCAATCGAATACGGAGGATGAAACTGGAAGCAAGGACCCATGGGCAAACTTGGCTGGATTAGAC CCAGAGAACGAAGATGTGATGGTGGTGGGCGAATATTTCGGGCAGTACCAAAGAAAACTGGTGCATCTCTGCATGGATTCACAACCGTATTACGACTAA
AA sequence Show only first row Show all	>Lus10038096 pacid=23163772 polypeptide=Lus10038096 locus=Lus10038096.g ID=Lus10038096.BGIv1.0 annot-version=v1.0 MSLAGSPPLPAAESSSSPWECMLPGPPSRNNFGSVDISPSGLLAFPTGSSISVIDSCSLQHISTIPLPAPLSPSSASSASVALSPFVTSVRWTPLPLRRD LLVTEPSSSHLILAAGDRHGRIGLVDFRRRSVLLWLDSDLSSKCGIQDLCWILCRPDLYVLAAISGPSTLSLYNNSSGHCFFKYDATPEYLSCIRRDPFD PRHFCVIGLKGFLLSIKLLGEADDEVVVKELRIPNDCTEFLKLERDPAGGSSSSAPASAAFPRYSVKMTFSPQCNHILLVTFPRELVVFDLQYETTLFNS LLPRGCPKFLNVLTDPNSGFLYCAHLDGKLSVWRRKEGEQVHILCVIEELMPSIGSSVPSPALLAIAISPSESTLQNVVKLYRDAPNTPSSQDFNNHFDF YDESLLLSKTHMISISDDGKLSNWLLTAEEIVEREVDVIPYAEDDANFIASTDGKNLERNKQQENANGSKGRLSSVSCEDHATVKICLVGQLQLLSSSLT MIAVPSPSLTATLARGGNYPAVAVPLVALGTQTGMIDIVDVSANAVAASVSVHTSSVRGLRWLGNSRLVSFSYNQTNEKTGGYANKLVVTCVRSGLNRPF RLLHKPERAPIRALRTSSSGRYLLILFRDAPVEVWAMTKSPVMLRSLALPFTVLEWTLPTVPKPVQNGPSRQSSFNDGTPKASDGPPTPNSSESTVSSDT SQDEAAESFAFALVNGALGVFEVHGRKIRDFRPKWPSSSFVASDGLITAMAYRLPHVVMGDRTGNIRWWDVTTGSSSSFNTHREGIRRIKFSPVVPGDKS RGRVAVLFYDNTFSVFDLDSPDPLANSLLQPQFPGTLVMELDWLPLRTEKHDPLVLCIAGADGSYRLLEVNMNDKRHGFRPPQSIKERFRPVPICCPILL PTPHALALRMILQLGVKPSWFNTSSTAIDRRPNSIPGASSSEGDFRSYMIDLPSIGDSVVPEMLLKVLETYRKEGCILDDEVAKLYATVVNKGCAVRFAF AAAIFGETAEALFWLQLPRALKHLMSKLVGKAPLKSAISATAAELEGAVMLTRITSREKALANMGSVDSPCLWQSHGLLRLMAFQQEELWESANERIPWH EKLEGEAAIQNQVHELITVGNLETAVSLLLSTPAESSFFYPNALRAVALSSAVSNSLLELAVKVVAANMVRTDRSLAATHLLCAVGRHQEACSQLQDAGC WTDAATLAATHLKGSDYARVLQRWAGHVLHTEHNVWRALILYVAAGGLPEALAALREAQQPDTAAMFILACREIHGEILQSNTEDETGSKDPWANLAGLD PENEDVMVVGEYFGQYQRKLVHLCMDSQPYYD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G33530			Transducin family protein / WD...		Lus10038096 [exp]	0	1
AT4G30710		QWRF8	QWRF domain containing 8, Fami...		Lus10022176 [exp]	3.5	0.8483
AT1G49040		SCD1	STOMATAL CYTOKINESIS-DEFECTIVE...		Lus10023563 [exp]	4.9	0.8605
AT1G32930			Galactosyltransferase family p...		Lus10033248 [exp]	5.1	0.8310
AT2G39750			S-adenosyl-L-methionine-depend...		Lus10001013 [exp]	6.0	0.8454
AT5G38880			unknown protein		Lus10034366 [exp]	6.5	0.8393
AT2G39750			S-adenosyl-L-methionine-depend...		Lus10030155 [exp]	9.5	0.8452
AT2G03060	MADS	AGL30	AGAMOUS-like 30 (.1.2)		Lus10030450 [exp]	10.8	0.8386
AT3G45850			P-loop containing nucleoside t...		Lus10018120 [exp]	11.2	0.8547
AT1G38065			O-fucosyltransferase family pr...		Lus10028080 [exp]	16.1	0.8369
AT1G15080		ATLPP2, LPP2, A...	PHOSPHATIDIC ACID PHOSPHATASE ...		Lus10035261 [exp]	18.2	0.7537

Compare expression of checked genes

Lus10038096 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.