Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15810 200 / 2e-64 Protein of unknown function (DUF567) (.1) AT1G80120 180 / 6e-57 Protein of unknown function (DUF567) (.1) AT2G38640 92 / 1e-22 Protein of unknown function (DUF567) (.1) AT5G41590 87 / 7e-21 Protein of unknown function (DUF567) (.1) AT5G01750 70 / 2e-14 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) AT2G05910 61 / 2e-11 Protein of unknown function (DUF567) (.1) AT3G14260 61 / 4e-11 Protein of unknown function (DUF567) (.1) AT1G53880 62 / 7e-11 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1) AT1G53900 62 / 7e-11 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1) AT5G20640 60 / 7e-11 Protein of unknown function (DUF567) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006656 [exp] 236 / 3e-79 AT3G15810 127 / 7e-37 Protein of unknown function (DUF567) (.1) Lus10016666 [exp] 191 / 6e-61 AT3G15810 265 / 5e-90 Protein of unknown function (DUF567) (.1) Lus10032602 [exp] 155 / 4e-47 AT3G15810 211 / 5e-69 Protein of unknown function (DUF567) (.1) Lus10007118 [exp] 130 / 5e-38 AT3G15810 191 / 4e-62 Protein of unknown function (DUF567) (.1) Lus10017526 [exp] 84 / 4e-19 AT5G41590 194 / 4e-62 Protein of unknown function (DUF567) (.1) Lus10028756 [exp] 84 / 5e-19 AT5G41590 194 / 7e-62 Protein of unknown function (DUF567) (.1) Lus10007423 [exp] 81 / 3e-18 AT2G38640 187 / 4e-60 Protein of unknown function (DUF567) (.1) Lus10010681 [exp] 75 / 3e-16 AT2G38640 184 / 6e-59 Protein of unknown function (DUF567) (.1) Lus10008485 [exp] 67 / 4e-13 AT3G14260 132 / 4e-38 Protein of unknown function (DUF567) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G067000 [exp] 238 / 7e-80 AT3G15810 229 / 1e-76 Protein of unknown function (DUF567) (.1) Potri.001G192000 [exp] 210 / 6e-69 AT3G15810 281 / 5e-97 Protein of unknown function (DUF567) (.1) Potri.003G032500 [exp] 195 / 5e-63 AT3G15810 264 / 2e-90 Protein of unknown function (DUF567) (.1) Potri.003G133200 [exp] 89 / 1e-21 AT5G41590 207 / 1e-67 Protein of unknown function (DUF567) (.1) Potri.006G113400 [exp] 87 / 9e-21 AT2G38640 214 / 5e-71 Protein of unknown function (DUF567) (.1) Potri.006G113800 [exp] 86 / 2e-20 AT1G80120 112 / 3e-30 Protein of unknown function (DUF567) (.1) Potri.001G098400 [exp] 86 / 5e-20 AT5G41590 201 / 3e-65 Protein of unknown function (DUF567) (.1) Potri.016G143000 [exp] 84 / 2e-19 AT2G38640 214 / 1e-70 Protein of unknown function (DUF567) (.1) Potri.016G143500 [exp] 84 / 4e-19 AT1G80120 105 / 7e-28 Protein of unknown function (DUF567) (.1) Potri.001G106300 [exp] 67 / 1e-13 AT1G63410 132 / 8e-39 Protein of unknown function (DUF567) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0395 [flax] [poplar] Tubby_C PF04525 [flax] [poplar] LOR LURP-one-related
Representative CDS sequence Show only first row Show all	>Lus10038097 pacid=23163863 polypeptide=Lus10038097 locus=Lus10038097.g ID=Lus10038097.BGIv1.0 annot-version=v1.0 ATGGCTATGATCGGAGGAGCGGCGGGGATTGTGGACGACAAGTTCTGTTACAGAGAGGAAACAAGTCTTACGGTGCGGAAAACTTCAGTTTTCTTCCCAG GGGATGGCTTCGTTGTGTACGATCCAAACGGGGAAGTGATATTCCGGTTCGATTCATACGGCCCAGAGACCAAGGACGAGCTGGTTCTCATGGACGCTTC CGGGAAATGCCTTCTCACTCTCCTTCGCAAGAAGCCAAGTCTCCACAACAGGTGGGAAGGCTTCCTCGGCGAGAGAATCCAAAGCCCAACCCACGTCGGC TTGACTGAGGAAGAAGCCAGCGTTGGCGGCGGTGGGCCCATCTTCACGGTGTTCAAATCAAGCATAATCGGACAGTCGTCTTTGATCGTGGAGCTCTACG GCACCGATCCTCCAGGAGGCGATGAGTACCTGATCGAGGGCTCTTACGTCCACAGATCATGCACCGTTTATTACACCCCTGTCCTCCAAAACTCCTCATC GTCCAAGGAAGCTGTTGCTGAGATCAAACGTAAAGTGGACCCCACCACACACGTGTTGCTTAGCCGTGACGTGTTCTTGCTGTGTCTGAAGCCCGGCTTT GACGGCGCCTTCGCCATGGGATTGGTTCTGGTCCTTGACCAGCTGTTTGATGATCAAGTCGTTGACGGTGACGACGATGTTGATTGTTCTGAATCTGATC CTGAAGGTGCGCCGTAG
AA sequence Show only first row Show all	>Lus10038097 pacid=23163863 polypeptide=Lus10038097 locus=Lus10038097.g ID=Lus10038097.BGIv1.0 annot-version=v1.0 MAMIGGAAGIVDDKFCYREETSLTVRKTSVFFPGDGFVVYDPNGEVIFRFDSYGPETKDELVLMDASGKCLLTLLRKKPSLHNRWEGFLGERIQSPTHVG LTEEEASVGGGGPIFTVFKSSIIGQSSLIVELYGTDPPGGDEYLIEGSYVHRSCTVYYTPVLQNSSSSKEAVAEIKRKVDPTTHVLLSRDVFLLCLKPGF DGAFAMGLVLVLDQLFDDQVVDGDDDVDCSESDPEGAP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15810			Protein of unknown function (D...		Lus10038097 [exp]	0	1
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Lus10028546 [exp]	4.2	0.7793
AT2G21990			Protein of unknown function, D...		Lus10035847 [exp]	7.3	0.7503
AT1G06920	OFP	ATOFP4, OFP4	ARABIDOPSIS THALIANA OVATE FAM...		Lus10014164 [exp]	8.2	0.7387
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Lus10018852 [exp]	8.8	0.8084
AT4G24050			NAD(P)-binding Rossmann-fold s...		Lus10003204 [exp]	10.6	0.7231
AT4G14540	CCAAT	NF-YB3	"nuclear factor Y, subunit B3"...		Lus10035854 [exp]	11.7	0.8024
AT4G16444			unknown protein		Lus10016696 [exp]	18.6	0.6959
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10010665 [exp]	22.5	0.6801
AT5G16550			unknown protein		Lus10033497 [exp]	23.2	0.7206
AT4G24050			NAD(P)-binding Rossmann-fold s...		Lus10017308 [exp]	23.5	0.6843

Compare expression of checked genes

Lus10038097 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.