Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26600 547 / 0 Glycosyl hydrolase superfamily protein (.1.2) AT3G15800 485 / 3e-171 Glycosyl hydrolase superfamily protein (.1) AT1G32860 335 / 6e-112 Glycosyl hydrolase superfamily protein (.1) AT2G27500 321 / 5e-107 Glycosyl hydrolase superfamily protein (.1.2.3) AT5G42100 312 / 4e-103 ATBG_PPAP, ATBG_PAP ARABIDOPSIS THALIANA BETA-1,3-GLUCANASE_PUTATIVE, beta-1,3-glucanase_putative (.1.2) AT2G16230 304 / 8e-99 O-Glycosyl hydrolases family 17 protein (.1) AT5G42720 295 / 3e-96 Glycosyl hydrolase family 17 protein (.1) AT4G18340 294 / 3e-96 Glycosyl hydrolase superfamily protein (.1) AT4G34480 295 / 3e-95 O-Glycosyl hydrolases family 17 protein (.1) AT1G30080 288 / 6e-94 Glycosyl hydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006659 [exp] 581 / 0 AT2G26600 437 / 5e-156 Glycosyl hydrolase superfamily protein (.1.2) Lus10011482 [exp] 484 / 3e-170 AT3G15800 540 / 0.0 Glycosyl hydrolase superfamily protein (.1) Lus10023120 [exp] 385 / 2e-133 AT3G15800 409 / 1e-143 Glycosyl hydrolase superfamily protein (.1) Lus10001660 [exp] 323 / 4e-108 AT1G32860 462 / 8e-163 Glycosyl hydrolase superfamily protein (.1) Lus10004869 [exp] 318 / 8e-106 AT2G27500 491 / 5e-174 Glycosyl hydrolase superfamily protein (.1.2.3) Lus10017344 [exp] 318 / 8e-106 AT1G32860 459 / 5e-161 Glycosyl hydrolase superfamily protein (.1) Lus10020618 [exp] 318 / 5e-105 AT2G27500 494 / 5e-175 Glycosyl hydrolase superfamily protein (.1.2.3) Lus10008277 [exp] 317 / 8e-105 AT1G32860 483 / 6e-170 Glycosyl hydrolase superfamily protein (.1) Lus10033244 [exp] 316 / 2e-104 AT1G32860 483 / 5e-170 Glycosyl hydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G067500 [exp] 585 / 0 AT2G26600 561 / 0.0 Glycosyl hydrolase superfamily protein (.1.2) Potri.018G129500 [exp] 582 / 0 AT2G26600 543 / 0.0 Glycosyl hydrolase superfamily protein (.1.2) Potri.001G192200 [exp] 502 / 4e-177 AT3G15800 514 / 0.0 Glycosyl hydrolase superfamily protein (.1) Potri.003G032600 [exp] 495 / 3e-175 AT3G15800 524 / 0.0 Glycosyl hydrolase superfamily protein (.1) Potri.011G152400 [exp] 340 / 6e-114 AT1G32860 502 / 8e-178 Glycosyl hydrolase superfamily protein (.1) Potri.001G449100 [exp] 340 / 1e-113 AT1G32860 483 / 3e-170 Glycosyl hydrolase superfamily protein (.1) Potri.009G163700 [exp] 321 / 5e-107 AT2G27500 499 / 1e-177 Glycosyl hydrolase superfamily protein (.1.2.3) Potri.004G097400 [exp] 314 / 3e-104 AT2G27500 462 / 3e-163 Glycosyl hydrolase superfamily protein (.1.2.3) Potri.011G084900 [exp] 311 / 5e-103 AT1G30080 538 / 0.0 Glycosyl hydrolase superfamily protein (.1) Potri.004G202400 [exp] 311 / 6e-103 AT2G27500 540 / 0.0 Glycosyl hydrolase superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00332 [flax] [poplar] Glyco_hydro_17 Glycosyl hydrolases family 17
Representative CDS sequence Show only first row Show all	>Lus10038099 pacid=23163680 polypeptide=Lus10038099 locus=Lus10038099.g ID=Lus10038099.BGIv1.0 annot-version=v1.0 ATGGCAAGTCACCATCATAGACTTGTGTTGTTTCTGCTCTTGCTGTGTTTCTCTCCTACTCCATCATTGGCAGACTCAGCATTTATCGGGACATATGGTA TAAATTATGGAAGAATTGCAGATAACATTCCGTCGCCGGATGATGTAGTTAGGCTTCTCAGGTTAGCTAAGATAAGGAATGTTCGGATCTACGATGCTGA TCATAGTGTATTGAATGCATTTAGAGGAACTGGGCTTAAGCTTGTGATCGGCCTTCCAAATGGTTACCTGAAAGACATGAGCAGTAATGCAAGCAACGCT ATGAGTTGGGTTAAAGAAAATGTTGAGCGATTCATGCCTAACTCGGATATATGTGGCATTGCTATCGGGAATGAAGTTTTAGGAGGAGGTGATGTTGAAC TATATGGAGCCCTTCTTGGTGCCGCCAAAAATGTTCATAGTGCTCTAAATAAGCTGGGTTTATCCGACACTGTTCAAATTTCAACTGCTCATTCACAAGC CGTGTTCTCTAATTCGTATCCTCCTTCTTCGTGTGTATTTCGGGAGAACATTGCTCAGTATATGAAGCCACTGATGCAGTTCTTCTGGGAAACGGGGTCA CCATTCTGCTTGAATGTGTATCCGTTCCTGGCATACATGAGTGATCCGGAGAACATTGATATTAATTATGCTCTCTTTCAGAAAACTAAGGGGATTTATG ATCCCAAAACTGATTTGTACTATGATAATATGCTTGATGCTCAGATAGATGCAACCTATGCTGCTCTGGAGAATGCTGGATTTGACAAGATGGAAGTCAT AGTCACTGAGACTGGTTGGGCTTCTCGTGGTGACAATAACGAAGCTGCTGCTACGGTTGAGAATGCTAGGACCTACAACTTTAACTTACGTAAAAGACTG GCGAAGAAGAAAGGTACACCCATGAGGCCGAAGAATATTGTGAAGGCGTATGTATTCGCTATATTCAATGAGAATTTGAAGCCTGGACCAACGTCTGAGA GGAATTTCGGACTTTTCAAGCCAGATGGAAGCATTTCGTATGACGTTGGGTATAAGGGTCTTAAATCTTCATCAGCTGATTCAATAGTTTTGTCATTAAA GGTAATAGATCTTCATGTTCCTGCCTGTTACATCAATATGAATGGCCATATGCTCGAATTGTTTGTAGCTTGCCTGCCTAGTTTGGTAAAAAGATTGAAT GAAGTAGATCAACTTTTCTCCCAAGCTACAGTGTTTATGGTATTTACTTGTTCTGCTGTGTTTTGCTCTTACGATTTCTGA
AA sequence Show only first row Show all	>Lus10038099 pacid=23163680 polypeptide=Lus10038099 locus=Lus10038099.g ID=Lus10038099.BGIv1.0 annot-version=v1.0 MASHHHRLVLFLLLLCFSPTPSLADSAFIGTYGINYGRIADNIPSPDDVVRLLRLAKIRNVRIYDADHSVLNAFRGTGLKLVIGLPNGYLKDMSSNASNA MSWVKENVERFMPNSDICGIAIGNEVLGGGDVELYGALLGAAKNVHSALNKLGLSDTVQISTAHSQAVFSNSYPPSSCVFRENIAQYMKPLMQFFWETGS PFCLNVYPFLAYMSDPENIDINYALFQKTKGIYDPKTDLYYDNMLDAQIDATYAALENAGFDKMEVIVTETGWASRGDNNEAAATVENARTYNFNLRKRL AKKKGTPMRPKNIVKAYVFAIFNENLKPGPTSERNFGLFKPDGSISYDVGYKGLKSSSADSIVLSLKVIDLHVPACYINMNGHMLELFVACLPSLVKRLN EVDQLFSQATVFMVFTCSAVFCSYDF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26600			Glycosyl hydrolase superfamily...		Lus10038099 [exp]	0	1
AT1G50670			OTU-like cysteine protease fam...		Lus10021522 [exp]	1.4	0.8350
AT1G73390			Endosomal targeting BRO1-like ...		Lus10026368 [exp]	2.8	0.8233
AT3G24530			AAA-type ATPase family protein...		Lus10023642 [exp]	3.0	0.8129
AT1G61770			Chaperone DnaJ-domain superfam...		Lus10020062 [exp]	4.5	0.8083
AT1G13570			F-box/RNI-like superfamily pro...		Lus10034415 [exp]	7.5	0.7880
AT4G27080		ATPDI7, ATPDIL5...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10019611 [exp]	7.9	0.7444
AT5G36930			Disease resistance protein (TI...		Lus10000738 [exp]	8.1	0.7955
AT5G47760		ATPK5, ATPGLP2	2-phosphoglycolate phosphatase...		Lus10033024 [exp]	11.2	0.7608
AT4G01995			unknown protein		Lus10016264 [exp]	12.3	0.7871
AT1G54730			Major facilitator superfamily ...		Lus10029971 [exp]	13.3	0.7714

Compare expression of checked genes

Lus10038099 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.