Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25280 137 / 2e-40 serine-rich protein-related (.1.2) AT5G11090 132 / 2e-38 serine-rich protein-related (.1) AT5G20370 64 / 1e-12 serine-rich protein-related (.1) AT1G24577 44 / 3e-06 unknown protein AT1G67910 44 / 7e-06 unknown protein AT3G13227 40 / 0.0001 serine-rich protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006660 [exp] 276 / 9e-95 AT5G25280 144 / 4e-43 serine-rich protein-related (.1.2) Lus10039998 [exp] 235 / 2e-78 AT5G25280 157 / 3e-48 serine-rich protein-related (.1.2) Lus10008808 [exp] 234 / 4e-78 AT5G25280 153 / 2e-46 serine-rich protein-related (.1.2) Lus10001946 [exp] 146 / 1e-43 AT5G11090 179 / 9e-57 serine-rich protein-related (.1) Lus10001928 [exp] 142 / 6e-42 AT5G11090 177 / 3e-56 serine-rich protein-related (.1) Lus10008811 [exp] 55 / 6e-10 AT5G11090 61 / 2e-12 serine-rich protein-related (.1) Lus10038101 [exp] 48 / 4e-07 AT5G11090 54 / 2e-09 serine-rich protein-related (.1) Lus10034901 [exp] 45 / 3e-06 AT1G67910 49 / 6e-09 unknown protein Lus10023632 [exp] 42 / 2e-05 AT1G67910 48 / 1e-08 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G060800 [exp] 167 / 4e-52 AT5G25280 130 / 2e-37 serine-rich protein-related (.1.2) Potri.018G023300 [exp] 165 / 4e-51 AT5G11090 194 / 1e-62 serine-rich protein-related (.1) Potri.018G120400 [exp] 164 / 7e-51 AT5G11090 126 / 3e-36 serine-rich protein-related (.1) Potri.006G258600 [exp] 155 / 3e-47 AT5G25280 181 / 1e-57 serine-rich protein-related (.1.2) Potri.006G060700 [exp] 67 / 4e-14 AT5G11090 66 / 4e-14 serine-rich protein-related (.1) Potri.018G120300 [exp] 62 / 1e-12 AT5G11090 67 / 1e-14 serine-rich protein-related (.1) Potri.018G079200 [exp] 42 / 3e-05 AT1G67910 45 / 9e-08 unknown protein Potri.002G250700 [exp] 42 / 5e-05 AT3G56500 43 / 5e-06 serine-rich protein-related (.1) Potri.008G186200 [exp] 40 / 0.0001 AT1G67910 85 / 4e-23 unknown protein Potri.010G046700 [exp] 40 / 0.0002 AT1G67910 82 / 4e-22 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038100 pacid=23163636 polypeptide=Lus10038100 locus=Lus10038100.g ID=Lus10038100.BGIv1.0 annot-version=v1.0 ATGGCGGTTACAACTAGCCAAACCTCCAGGCGCTCCACCGTCGGCAGCAGCGGCGCCGTATCAACAAACCGCCGTTCATACTCTAACTCCGGCAGATTCA GCCTCTCATCCTACAATCAATCCTCTCCGTCCTCCTCTTCCACCGCGTTCGCATCATCCAGCACCAGTTTTGCTTCTCGCTCGTCTACTTTCCTTGCGGG GAACAACAACATCAGATCTGCGTCCCCTCCACGCGTCAGCCTCTACGACAGCCCTACTATGTCAGCCTCCGCCGTCTGTTTCTCTCTGGACCGCTCGGTC TCTCCCAATCGGTCAATCTCGACGGTGAGTCCATCCAGGAGTCGTCCTCATGTGGTGAGGAAGCAGCCGGTTCCAAAGAAGACGTGTATGTGCTCTCCGA CAACGCATCCTGGATCGTTTCGGTGTAGCCTCCACAAGAATCAGAGCGGCGGAAGCGGTCACCACTCGTCGCCGAACAACCGCCTCAACGCTTGCAGATC TGCGATGACGAACTCGCTAGTGAGGATAGCCGGCGTGGAAGGAGGCGATTTGGTGAAGCGAGCGCTTGCGGCCTTGATCCGTCCTTCATCACATCAGCAG AGGCGGAGAACGGCGTTCCAACCTCGTCCCAGCCGACTCAGTGTCATGTCTATGGCGGTTGCAGTGTCATGTCTATGGCGGTTTGAGTCTTAA
AA sequence Show only first row Show all	>Lus10038100 pacid=23163636 polypeptide=Lus10038100 locus=Lus10038100.g ID=Lus10038100.BGIv1.0 annot-version=v1.0 MAVTTSQTSRRSTVGSSGAVSTNRRSYSNSGRFSLSSYNQSSPSSSSTAFASSSTSFASRSSTFLAGNNNIRSASPPRVSLYDSPTMSASAVCFSLDRSV SPNRSISTVSPSRSRPHVVRKQPVPKKTCMCSPTTHPGSFRCSLHKNQSGGSGHHSSPNNRLNACRSAMTNSLVRIAGVEGGDLVKRALAALIRPSSHQQ RRRTAFQPRPSRLSVMSMAVAVSCLWRFES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G25280			serine-rich protein-related (....		Lus10038100 [exp]	0	1
AT1G29950	bHLH		basic helix-loop-helix (bHLH) ...		Lus10004926 [exp]	1.0	0.9541
AT1G64450			Glycine-rich protein family (....		Lus10003189 [exp]	1.4	0.9144
AT2G42610		LSH10	LIGHT SENSITIVE HYPOCOTYLS 10,...		Lus10007272 [exp]	2.4	0.9138
AT3G54390	Trihelix		sequence-specific DNA binding ...		Lus10024143 [exp]	4.5	0.9077
AT1G13130			Cellulase (glycosyl hydrolase ...		Lus10011404 [exp]	4.9	0.8994
AT3G23880			F-box and associated interacti...		Lus10008870 [exp]	5.0	0.9017
AT4G38660			Pathogenesis-related thaumatin...		Lus10028447 [exp]	6.0	0.8935
AT1G31720			Protein of unknown function (D...		Lus10037256 [exp]	6.5	0.8627
AT3G10680			HSP20-like chaperones superfam...		Lus10034875 [exp]	7.9	0.8529
AT2G19580		TET2	tetraspanin2 (.1)		Lus10040551 [exp]	8.7	0.8632

Compare expression of checked genes

Lus10038100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.