Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11090 54 / 2e-09 serine-rich protein-related (.1) AT5G25280 53 / 5e-09 serine-rich protein-related (.1.2) AT1G67910 45 / 7e-07 unknown protein AT1G24577 41 / 1e-05 unknown protein AT5G20370 40 / 7e-05 serine-rich protein-related (.1) AT3G13227 39 / 0.0001 serine-rich protein-related (.1) AT5G55980 37 / 0.0006 serine-rich protein-related (.1) AT3G56500 37 / 0.0006 serine-rich protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008811 [exp] 115 / 1e-34 AT5G11090 61 / 2e-12 serine-rich protein-related (.1) Lus10039998 [exp] 57 / 2e-10 AT5G25280 157 / 3e-48 serine-rich protein-related (.1.2) Lus10008808 [exp] 56 / 4e-10 AT5G25280 153 / 2e-46 serine-rich protein-related (.1.2) Lus10001946 [exp] 52 / 6e-09 AT5G11090 179 / 9e-57 serine-rich protein-related (.1) Lus10006660 [exp] 52 / 1e-08 AT5G25280 144 / 4e-43 serine-rich protein-related (.1.2) Lus10038100 [exp] 50 / 5e-08 AT5G25280 145 / 4e-43 serine-rich protein-related (.1.2) Lus10001928 [exp] 49 / 8e-08 AT5G11090 177 / 3e-56 serine-rich protein-related (.1) Lus10023632 [exp] 40 / 3e-05 AT1G67910 48 / 1e-08 unknown protein Lus10034901 [exp] 40 / 4e-05 AT1G67910 49 / 6e-09 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G060700 [exp] 81 / 1e-20 AT5G11090 66 / 4e-14 serine-rich protein-related (.1) Potri.018G120300 [exp] 78 / 1e-19 AT5G11090 67 / 1e-14 serine-rich protein-related (.1) Potri.006G060800 [exp] 50 / 4e-08 AT5G25280 130 / 2e-37 serine-rich protein-related (.1.2) Potri.006G258600 [exp] 50 / 4e-08 AT5G25280 181 / 1e-57 serine-rich protein-related (.1.2) Potri.018G023300 [exp] 49 / 1e-07 AT5G11090 194 / 1e-62 serine-rich protein-related (.1) Potri.018G120400 [exp] 46 / 1e-06 AT5G11090 126 / 3e-36 serine-rich protein-related (.1) Potri.010G046700 [exp] 40 / 4e-05 AT1G67910 82 / 4e-22 unknown protein Potri.008G186200 [exp] 38 / 0.0002 AT1G67910 85 / 4e-23 unknown protein Potri.006G159300 [exp] 37 / 0.0008 AT1G24577 43 / 5e-07 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038101 pacid=23163629 polypeptide=Lus10038101 locus=Lus10038101.g ID=Lus10038101.BGIv1.0 annot-version=v1.0 ATGGCTAATGCCTGTTATTCTTATCCCACCAATCCCGGAAAGAAGGGGACGACGTGCCTCTGTCTGCGCACCNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNGCTCCTGCCTGTGATTCTCATCCATCCAATCCGGGAAAGATGCGGACGACGTGCCTCTGCTCGCCTACCAACCATCCGGGGTCATTCCGATGCGC AATCCACAAGAACAAGTCCAGATCACGGGAACTGACTTCCGCGGCGGCAAAGGCGTTCACATTGAGGGCGTTTCTACTGCAGATCATCAACCGGTCAAGC AAGGACGTGAATCGCCGGAGGAATTTCCAGCCGAAGCAGTCCAGGTTTTGCACGATGAACAACGCTGATCATACAAACGGCGTCGTTGTTTCATAA
AA sequence Show only first row Show all	>Lus10038101 pacid=23163629 polypeptide=Lus10038101 locus=Lus10038101.g ID=Lus10038101.BGIv1.0 annot-version=v1.0 MANACYSYPTNPGKKGTTCLCLRTXXXXXXXXXXXAPACDSHPSNPGKMRTTCLCSPTNHPGSFRCAIHKNKSRSRELTSAAAKAFTLRAFLLQIINRSS KDVNRRRNFQPKQSRFCTMNNADHTNGVVVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11090			serine-rich protein-related (....		Lus10038101 [exp]	0	1
AT3G46790		CRR2	CHLORORESPIRATORY REDUCTION 2,...		Lus10001557 [exp]	4.7	0.6771
AT2G40920			F-box and associated interacti...		Lus10001579 [exp]	8.0	0.6546
AT1G32640	bHLH	JIN1, JAI1, ZBF...	JASMONATE INSENSITIVE 1, Basic...		Lus10030970 [exp]	22.0	0.6535
AT4G30410			sequence-specific DNA binding ...		Lus10015500 [exp]	22.5	0.6534
AT5G47850		CCR4	CRINKLY4 related 4 (.1)		Lus10012995 [exp]	38.6	0.6211
AT3G15395			unknown protein		Lus10027849 [exp]	47.0	0.6138
AT1G68040			S-adenosyl-L-methionine-depend...		Lus10007950 [exp]	52.6	0.5999
					Lus10035698 [exp]	55.5	0.5805
AT2G39210			Major facilitator superfamily ...		Lus10037949 [exp]	60.0	0.5843
AT5G20230		SAG14, ATBCB	SENESCENCE ASSOCIATED GENE 14,...		Lus10025752 [exp]	72.5	0.5792

Compare expression of checked genes

Lus10038101 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.