Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G12400 467 / 6e-161 unknown protein AT2G25270 268 / 1e-83 unknown protein AT1G71110 255 / 2e-78 unknown protein AT1G80540 202 / 1e-58 unknown protein AT5G67550 59 / 6e-09 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008028 [exp] 818 / 0 AT2G12400 641 / 0.0 unknown protein Lus10008813 [exp] 615 / 0 AT2G12400 616 / 0.0 unknown protein Lus10035272 [exp] 339 / 2e-111 AT1G71110 503 / 2e-174 unknown protein Lus10001945 [exp] 305 / 2e-97 AT2G25270 650 / 0.0 unknown protein Lus10001929 [exp] 300 / 2e-95 AT2G25270 457 / 3e-156 unknown protein Lus10013492 [exp] 295 / 7e-94 AT1G71110 645 / 0.0 unknown protein Lus10007962 [exp] 294 / 1e-93 AT1G71110 578 / 0.0 unknown protein Lus10034641 [exp] 284 / 2e-89 AT1G71110 587 / 0.0 unknown protein Lus10014341 [exp] 152 / 2e-40 AT2G25270 352 / 7e-116 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G120200 [exp] 516 / 4e-180 AT2G12400 596 / 0.0 unknown protein Potri.006G060600 [exp] 511 / 7e-178 AT2G12400 579 / 0.0 unknown protein Potri.018G023200 [exp] 439 / 1e-149 AT2G25270 595 / 0.0 unknown protein Potri.006G258700 [exp] 262 / 5e-81 AT2G25270 590 / 0.0 unknown protein Potri.010G115500 [exp] 200 / 1e-57 AT1G71110 646 / 0.0 unknown protein Potri.007G132601 [exp] 116 / 8e-28 AT5G67550 189 / 8e-54 unknown protein Potri.017G023400 [exp] 105 / 5e-24 AT5G67550 182 / 3e-51 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038102 pacid=23163693 polypeptide=Lus10038102 locus=Lus10038102.g ID=Lus10038102.BGIv1.0 annot-version=v1.0 ATGCTATCATCACCAAACCCGCGATTTTTTGTTCTCTTCATTTTCACCTCTTTTTTACTTCACCTCTCCTCCTCCTCTTCAGCTGCAGCTCCACAGACTG AGACTGCGACATACCGTCTCCGAGCTCCTCGATTTCCCGAGTTTTCTAGAGCTGGTGATGGCTTAGTTTTGCCATTTGGAATACGGCGATATCTTGCCGA AGGGAACTCTACCGCAGGGAATTCGACGACACTCGTATTAGCTGCTGAGAGGACGAGAAGGAAAGACCCTTTGGATCACTTGAATCATTACACTGGTGGA TTCAACATCAGTAATAAACATTATTGGGCTTCGGTGAGTGCAACAGCAGTCCCATTCTTTCTCGTTGCTGGAATATGGTTTCTTGTATTTGGGTTATCCC TAGCTTTTATCTGCCTCTGCTACTGCTGTTGCCGTGGAGAGCCTTATGGCTATTCTCGAGCTTGCTACGCCTTATCTCTCATCTTCCTCATCCTTTTCAC CGTTGCTGCAATTGCTGGATGTGTTGTTCTTTACACTGGTCAAGGGAAGTTCAACGGCATAACCTCAGACACATTGGACTATGTTGTGAGTCAGGCCGAT GTTACTGCTGAAAGCCTCAAGAACGTGTCTGGTTATCTTGCTGCAGCGAAATCAGTTGATGTTGACTCCCTTTTTCTGCCTGCTGATCTGCGTAATAAAC TTGATAACCTTGTGGCTAAGGCTAACTCCTCGGGAAACACATTGTCCAGCCGTACGCAGGACAACAGGAAGAAGATCAAAGATGGGTTGAATGGCATGAG ATTAGCTCTTATAATCCTAGCTGCTGTCATGCTTGGGTTGGCATTTCTTGGCTTTTTATTTTCCATCTTTGGGATGACTTGTCTCGTATACTTCCTGGTG ATTCTCGGATGGATTCTTGTTGCGGGTACATTTATCTTGTGTGGTGTATTTCTTCTCCTTCACAAAAACTTCCCACCTCAAGTCGGTCCTCCAGTAAACT ATAACCAATCTGGTCTTTTGGTTCCTCTCCTCTGCAACCCTTTCAACACTGATCTCACCGACAAAACAACCTGCGCCCCTGGTGAAGTCGACTTGCGCAA TGCTACCAATGTGTGGAAGGAATACGTGTGCCAAGTATCAGGATCAGGGCAATGCATAAGTACAGGCCGGCTAACTCCAACATTGTACTCCCAAATGTCA TCTGCGGTGAACGTAAGCTTCGGACTGTACCGATACGGCCCGTTCCTGGTGGAGCTAGAGGACTGCACGTTTGTGAGAAGGACATTCACTGACATCAACA GGGAATACTGCCCTGATCTTCGGAAATACACCGAGTGGATCTACGTTGGGCTGGTGATCGTGTCGGCGGCCGTCATGCTGTCGTTGATCTTCTGGGTTAT CTACGCAAGAGAGCGTCGCCATCGTGTGTATACGAAGCAGTTCATGACTGGAGGAGGATCACACAACAAGGCTGCTCCACACCACCCTATATGA
AA sequence Show only first row Show all	>Lus10038102 pacid=23163693 polypeptide=Lus10038102 locus=Lus10038102.g ID=Lus10038102.BGIv1.0 annot-version=v1.0 MLSSPNPRFFVLFIFTSFLLHLSSSSSAAAPQTETATYRLRAPRFPEFSRAGDGLVLPFGIRRYLAEGNSTAGNSTTLVLAAERTRRKDPLDHLNHYTGG FNISNKHYWASVSATAVPFFLVAGIWFLVFGLSLAFICLCYCCCRGEPYGYSRACYALSLIFLILFTVAAIAGCVVLYTGQGKFNGITSDTLDYVVSQAD VTAESLKNVSGYLAAAKSVDVDSLFLPADLRNKLDNLVAKANSSGNTLSSRTQDNRKKIKDGLNGMRLALIILAAVMLGLAFLGFLFSIFGMTCLVYFLV ILGWILVAGTFILCGVFLLLHKNFPPQVGPPVNYNQSGLLVPLLCNPFNTDLTDKTTCAPGEVDLRNATNVWKEYVCQVSGSGQCISTGRLTPTLYSQMS SAVNVSFGLYRYGPFLVELEDCTFVRRTFTDINREYCPDLRKYTEWIYVGLVIVSAAVMLSLIFWVIYARERRHRVYTKQFMTGGGSHNKAAPHHPI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G25270			unknown protein		Lus10038102 [exp]	0	1
AT2G12400			unknown protein		Lus10008028 [exp]	1.7	0.9390
AT4G24570		DIC2	dicarboxylate carrier 2 (.1)		Lus10015570 [exp]	2.4	0.9344
AT4G22780		ACR7	ACT domain repeat 7 (.1)		Lus10006662 [exp]	3.5	0.8993
					Lus10023370 [exp]	4.5	0.9086
AT3G16210			F-box family protein (.1)		Lus10023372 [exp]	6.3	0.8959
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Lus10022728 [exp]	6.3	0.8741
AT3G47110			Leucine-rich repeat protein ki...		Lus10022863 [exp]	6.9	0.8870
AT5G23100			Protein of unknown function, D...		Lus10009615 [exp]	7.1	0.9002
AT5G42660			Protein of unknown function (D...		Lus10024684 [exp]	7.6	0.8665
AT1G29290			unknown protein		Lus10007309 [exp]	7.7	0.9153

Compare expression of checked genes

Lus10038102 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.