Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G12646 284 / 7e-97 PLATZ transcription factor family protein (.1) AT3G60670 169 / 7e-52 PLATZ transcription factor family protein (.1) AT1G31040 158 / 2e-47 PLATZ transcription factor family protein (.1) AT1G21000 110 / 6e-29 PLATZ transcription factor family protein (.1.2) AT1G32700 109 / 7e-29 PLATZ transcription factor family protein (.1.2) AT2G01818 107 / 4e-28 PLATZ transcription factor family protein (.1) AT1G76590 107 / 6e-28 PLATZ transcription factor family protein (.1) AT1G43000 106 / 6e-28 PLATZ transcription factor family protein (.1) AT4G17900 105 / 1e-27 PLATZ transcription factor family protein (.1.2) AT5G46710 100 / 1e-25 PLATZ transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008031 [exp] 440 / 3e-158 AT2G12646 294 / 1e-100 PLATZ transcription factor family protein (.1) Lus10008814 [exp] 313 / 1e-107 AT2G12646 301 / 4e-103 PLATZ transcription factor family protein (.1) Lus10039989 [exp] 305 / 6e-104 AT2G12646 292 / 3e-99 PLATZ transcription factor family protein (.1) Lus10009283 [exp] 177 / 1e-54 AT3G60670 249 / 2e-83 PLATZ transcription factor family protein (.1) Lus10015881 [exp] 168 / 2e-51 AT3G60670 251 / 4e-84 PLATZ transcription factor family protein (.1) Lus10000261 [exp] 158 / 3e-49 AT2G12646 40 / 5e-05 PLATZ transcription factor family protein (.1) Lus10036226 [exp] 144 / 2e-42 AT1G31040 191 / 3e-61 PLATZ transcription factor family protein (.1) Lus10000482 [exp] 114 / 3e-30 AT4G17900 284 / 2e-97 PLATZ transcription factor family protein (.1.2) Lus10020337 [exp] 113 / 7e-30 AT4G17900 282 / 3e-96 PLATZ transcription factor family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G060500 [exp] 309 / 8e-107 AT2G12646 321 / 1e-111 PLATZ transcription factor family protein (.1) Potri.018G116000 [exp] 307 / 6e-106 AT2G12646 318 / 2e-110 PLATZ transcription factor family protein (.1) Potri.001G159200 [exp] 162 / 6e-49 AT1G31040 294 / 3e-101 PLATZ transcription factor family protein (.1) Potri.003G075600 [exp] 160 / 4e-48 AT1G31040 306 / 1e-105 PLATZ transcription factor family protein (.1) Potri.014G059300 [exp] 157 / 6e-47 AT3G60670 238 / 6e-79 PLATZ transcription factor family protein (.1) Potri.002G144900 [exp] 148 / 2e-43 AT3G60670 250 / 7e-84 PLATZ transcription factor family protein (.1) Potri.013G078500 [exp] 115 / 6e-31 AT4G17900 312 / 1e-108 PLATZ transcription factor family protein (.1.2) Potri.008G137300 [exp] 114 / 9e-31 AT2G01818 221 / 5e-73 PLATZ transcription factor family protein (.1) Potri.006G119400 [exp] 112 / 3e-30 AT2G27930 212 / 3e-70 PLATZ transcription factor family protein (.1) Potri.003G092800 [exp] 110 / 2e-29 AT4G17900 290 / 5e-100 PLATZ transcription factor family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04640 [flax] [poplar] PLATZ PLATZ transcription factor
Representative CDS sequence Show only first row Show all	>Lus10038103 pacid=23163796 polypeptide=Lus10038103 locus=Lus10038103.g ID=Lus10038103.BGIv1.0 annot-version=v1.0 ATGGGCCAGAAGGCGGAAACATGGTTGGAAGCGCTCCAAAATCAGAAGTTCTTCTTGTCTTGTTCATATCACGAATCGATTAAAAAGAATGTGTGTTGTC TTGATTGTTGTGTAAGTATTTGTGCTCACTGCGTCCCTGCTCATCGCTCCCACAGATTGCTTCAAATCCGTCGATATGTTTACAATGAGGTTGTCCAACT CGAAGACCTCCAAAGACTTGTTGATTGTTCCAATGTTCAGGCCTACACAATCAACGGTGCAAAAGTGGTGTTCATCAAGAGAAGGCCTCAAAACAGGCAA TTCAAAGGCTCCGGAAACTATTGCACTTCCTGCGGTAGAACCCTCCAGCACCCATTCATCCATTGCTCTCTTGCTTGCAAGGTGGAATTTGCGAGGAAAC ATTACAAGGACTTGAGTCTATTTGTAAAGAAATACAAGACATTAACACTTGGACCGGACTTTTTGATCCCACAAGACATCATCATAGGAGACGAAAATAA CATGACGGCGACCAACCATTCCACAATTGTGGACTCTGACGAGCCAATGAGCTGGTTGTCAGGATCTCGTTTTGGCTCCTCTTCCTCCTCCTCTAATTCA TCAGGATATATGAACAACATGATTGCAGCTTGTACGAACAAAGTTGTAGGAAAGAAGAGAACCGGGTTGGTCTACGTTTGGTCGACGAGCAATTATGATG ATCATGATCATAATAGTAGTACAGTCTCCGACGAGGGCATGGCCACAAGCATGAGTCGAAGGAAAGGCGTTCCTCAACGCTCACCTATGTGTTAA
AA sequence Show only first row Show all	>Lus10038103 pacid=23163796 polypeptide=Lus10038103 locus=Lus10038103.g ID=Lus10038103.BGIv1.0 annot-version=v1.0 MGQKAETWLEALQNQKFFLSCSYHESIKKNVCCLDCCVSICAHCVPAHRSHRLLQIRRYVYNEVVQLEDLQRLVDCSNVQAYTINGAKVVFIKRRPQNRQ FKGSGNYCTSCGRTLQHPFIHCSLACKVEFARKHYKDLSLFVKKYKTLTLGPDFLIPQDIIIGDENNMTATNHSTIVDSDEPMSWLSGSRFGSSSSSSNS SGYMNNMIAACTNKVVGKKRTGLVYVWSTSNYDDHDHNSSTVSDEGMATSMSRRKGVPQRSPMC

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G12646			PLATZ transcription factor fam...		Lus10038103 [exp]	0	1
					Lus10022042 [exp]	7.2	0.8180
AT5G46940			Plant invertase/pectin methyle...		Lus10015199 [exp]	7.3	0.8178
AT2G38750		ANNAT4	annexin 4 (.1)		Lus10024171 [exp]	15.1	0.8196
AT1G64960		HEB1	hypersensitive to excess boron...		Lus10025198 [exp]	21.2	0.8022
AT5G51780	bHLH	bHLH036	basic helix-loop-helix (bHLH) ...		Lus10031677 [exp]	21.3	0.8021
AT4G14368			Regulator of chromosome conden...		Lus10027273 [exp]	21.4	0.7931
					Lus10017966 [exp]	22.4	0.7953
AT3G51770		ATEOL1, ETO1	ARABIDOPSIS ETHYLENE OVERPRODU...		Lus10022660 [exp]	24.4	0.6370
AT5G51780	bHLH	bHLH036	basic helix-loop-helix (bHLH) ...		Lus10027394 [exp]	31.6	0.7940
AT2G21540		ATSFH3	SEC14-like 3 (.1.2.3)		Lus10042303 [exp]	33.4	0.7724

Compare expression of checked genes

Lus10038103 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.