Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47910 294 / 3e-101 CRR6 chlororespiratory reduction 6 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008032 [exp] 404 / 5e-144 AT2G47910 250 / 2e-83 chlororespiratory reduction 6 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G060100 [exp] 328 / 1e-114 AT2G47910 308 / 1e-106 chlororespiratory reduction 6 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08847 [flax] [poplar] Crr6 Chlororespiratory reduction 6
Representative CDS sequence Show only first row Show all	>Lus10038104 pacid=23163702 polypeptide=Lus10038104 locus=Lus10038104.g ID=Lus10038104.BGIv1.0 annot-version=v1.0 ATGGCTGCCACCATTAAAGCTGTTCTTCCCCCAAAACAATTCATTTCATGGACGTCATCCCGCAAACCCATCTCCCGTTCTCTGGTGGGCATGAAGAATT TGACGGACCTTAGCAGACAAGTGTCCACATCCGTTTCGTTCGACCCCTCAAGAAATTTCGACCTTCCCTTATTTGACGACGAAGAGTCGTCGTCGAATGT TGCGCCGCCGCCAATGCCAGCGAGCGAAGGGCGATACGAAGTAGTAATCAACAATGAAATCATTAGCAAGCTTGACTTGTCTCCCTTTCACAATGCTACT GGCATTACTTCCTCATCAGCAGGGGATCCAAAGGAGTTGTTGGAACGAACGGTGGGATTTACATTTAATTACGAGAGAGAGGATCCAAGAGACCCAAGAG AGTTTTCGGAATTCCCAGATATAAGGTTGTGGTTTGTCAGACTGGACGCTGCATATCCATGGCTGCCTGTAGTTTTGGATTGGAGAGCAGGGGAGCTTGC TCGTTATGCCGCCTTGTTGGTCCCTCATCAGATGAACATGAAGATGGGGGTAGTGTTCAATCCAGAGGCATTGGAGTTGTTTGTGATGAAGAAAGTTTTT GTTGGATATTCTTGGTTGAAGAAGCACAATGTTGCCAAGCCTAGATTGAAGGCCAAAGACATGGCCAGAATGCTTGGGTTTGGAATTGGAGATGAGCTTT TTGAACTAATCGATTCAAATTAA
AA sequence Show only first row Show all	>Lus10038104 pacid=23163702 polypeptide=Lus10038104 locus=Lus10038104.g ID=Lus10038104.BGIv1.0 annot-version=v1.0 MAATIKAVLPPKQFISWTSSRKPISRSLVGMKNLTDLSRQVSTSVSFDPSRNFDLPLFDDEESSSNVAPPPMPASEGRYEVVINNEIISKLDLSPFHNAT GITSSSAGDPKELLERTVGFTFNYEREDPRDPREFSEFPDIRLWFVRLDAAYPWLPVVLDWRAGELARYAALLVPHQMNMKMGVVFNPEALELFVMKKVF VGYSWLKKHNVAKPRLKAKDMARMLGFGIGDELFELIDSN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47910		CRR6	chlororespiratory reduction 6 ...		Lus10038104 [exp]	0	1
AT1G25440	CO	COL16	B-box type zinc finger protein...		Lus10034322 [exp]	1.4	0.9021
AT3G09150		ATHY2, GUN3, HY...	GENOMES UNCOUPLED 3, ARABIDOPS...		Lus10009713 [exp]	1.4	0.8965
AT2G30800		ATVT-1, HVT1	helicase in vascular tissue an...		Lus10020727 [exp]	1.7	0.8958
AT5G47610			RING/U-box superfamily protein...		Lus10025563 [exp]	2.6	0.8657
AT5G44005			unknown protein		Lus10003610 [exp]	4.5	0.8766
AT4G28570			Long-chain fatty alcohol dehyd...		Lus10008239 [exp]	4.9	0.8643
AT3G10840			alpha/beta-Hydrolases superfam...		Lus10028989 [exp]	5.7	0.8786
AT5G59550			zinc finger (C3HC4-type RING f...		Lus10010856 [exp]	7.1	0.8603
AT4G01030			pentatricopeptide (PPR) repeat...		Lus10040917 [exp]	7.3	0.8744
AT1G26850			S-adenosyl-L-methionine-depend...		Lus10008619 [exp]	9.8	0.8467

Compare expression of checked genes

Lus10038104 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.