Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25290 650 / 0 Phox1 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein AT5G20360 536 / 0 Phox3 Phox3, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) AT4G32070 471 / 5e-156 Phox4 Phox4, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) AT1G62390 415 / 4e-135 CLMP1, Phox2 Phox2, CLUMPED CHLOROPLASTS 1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) AT4G30480 71 / 3e-13 TPR1, AtTPR1 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) AT3G58620 61 / 3e-09 TTL4 tetratricopetide-repeat thioredoxin-like 4 (.1) AT2G42580 55 / 1e-07 VIT, TTL3 VHI-INTERACTING TPR CONTAINING PROTEIN, tetratricopetide-repeat thioredoxin-like 3 (.1) AT1G53300 53 / 7e-07 TTL1 tetratricopetide-repeat thioredoxin-like 1 (.1) AT1G62740 52 / 8e-07 Hop2 Hop2, stress-inducible protein, putative (.1) AT3G54010 51 / 2e-06 DEI1, PAS1 PASTICCINO 1, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008035 [exp] 1323 / 0 AT2G25290 667 / 0.0 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein Lus10006196 [exp] 700 / 0 AT2G25290 884 / 0.0 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein Lus10001927 [exp] 682 / 0 AT2G25290 879 / 0.0 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein Lus10001947 [exp] 499 / 3e-168 AT2G25290 884 / 0.0 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein Lus10001948 [exp] 486 / 1e-162 AT4G32070 864 / 0.0 Phox4, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) Lus10039592 [exp] 334 / 7e-104 AT1G62390 888 / 0.0 Phox2, CLUMPED CHLOROPLASTS 1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) Lus10029481 [exp] 325 / 3e-100 AT1G62390 889 / 0.0 Phox2, CLUMPED CHLOROPLASTS 1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) Lus10035117 [exp] 72 / 2e-13 AT4G30480 291 / 3e-99 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Lus10031983 [exp] 70 / 3e-12 AT4G30480 222 / 9e-76 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G121100 [exp] 828 / 0 AT2G25290 737 / 0.0 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein Potri.006G258300 [exp] 724 / 0 AT2G25290 680 / 0.0 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein Potri.018G023500 [exp] 717 / 0 AT2G25290 851 / 0.0 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein Potri.004G002900 [exp] 335 / 2e-104 AT1G62390 926 / 0.0 Phox2, CLUMPED CHLOROPLASTS 1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) Potri.011G021000 [exp] 323 / 1e-99 AT1G62390 885 / 0.0 Phox2, CLUMPED CHLOROPLASTS 1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) Potri.006G178900 [exp] 73 / 6e-14 AT4G30480 275 / 1e-92 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Potri.018G100700 [exp] 71 / 3e-13 AT4G30480 303 / 8e-104 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Potri.001G205300 [exp] 63 / 4e-10 AT5G09420 724 / 0.0 outer membrane 64, ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V, translocon at the outer membrane of chloroplasts 64-V (.1) Potri.002G094800 [exp] 57 / 3e-08 AT5G65160 451 / 2e-152 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) Potri.007G091200 [exp] 57 / 3e-08 AT5G65160 570 / 0.0 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF00564 [flax] [poplar] PB1 PB1 domain
Representative CDS sequence Show only first row Show all	>Lus10038106 pacid=23163881 polypeptide=Lus10038106 locus=Lus10038106.g ID=Lus10038106.BGIv1.0 annot-version=v1.0 ATGAGGAAGCAGCAGCAGAACGGGAAGGTGAGTAGCCCTAAGCCCATCATGGATAAAGATGAAGAAGTTTTCATTTCCCTATCTCAAGAATTGAAGGATG AAGGGAACAAACTGTTCCAGAGGAGAGATCACAATGGAGCTCTGGCAAAGTACGAGAAGGCTATCAAACTGCTGCCAAAAACCCACATAGATGTGTCTCA CCTGAGAAGCAACATGGCTGCCTGCTATATGCAGATGGGTCTTAGTCAATACCCTAGGGCAATTCACGAGTGTAACTTGGCATTGGAGGTCACACCAAAG TATGGCAAGGCGTTGTTGAAGAGGGCTAGGTGTTATGAGGCTCTGAACCGGTTGGACTTAGCTCTACGAGATGTCGGTACCGTATTGAAGATGGAGCCAG CTAATGTGATGGCATTTGAAGTTTGGGAAAGGGTGAAGAAATCTCTGGAGGAGAAGGGCCTCACTGTGAATGATACATCCATTGAACTGCCTCCTGACTA TGCTGAACCACCGCCCAGTTGTTCCTCTACTCCGACAAAGGCCAAAACACCTAAAGAGAAGACAACGAAGAAGAAGAACAGAGAAAGTGACGAAAAGAAT GGTACTGAGGAGAAGAAGGATTCTAATGATCAAGTGAGAGAAAACAAGGCTGAGAAGAGAAATATGAAACTAGTGATGGGAGATGATATAAGGTGTGCTC AGGTCCCGGTTAATTGCAGCCTTTTGGAACTAAAAGAAGTGGTCTGTGACCGATTTCCAGGTTCAAGACCTGTTCTTATCAAATATAAGGACCAAGAAGG AGATTTGATCACTATAACAACTGATGAAGACCTGAGGTTGGCTGAAACTTGTGCTTCACCACCACAAGGCTCTTTTAGGTTGTATCTGATCGAAATCAAT TCTCAACAAGATCCCATTGTGCAAAGACTTACGCAAGCTGGTCGTATGAAAAGAGTGGACACAAGGACATGGAACATGGAGAGGGACAAAGAGATGAAGA AGGGAATGCGCTATGTCGATGAATGGATTGTAGAATTTGCTAAGCTGTTCAAGGACCATGTGGCTCTCGATACTGATACGTACTTAGGTCTCAGTGATCT TGGTATTAAGTTATACTCCGAGGCTATTGAGGAGACTGTTACAAACGATGAAGCACAAGGCCTTTTCAGTACTGCGGCCGAGAATTTCCAGGAGATGGCA GCATTGGCGTTGTTCAACTGGGGAAATGTTCATATGTCCAGAGCAAGGAAGAAGATTGAATTCAAGGATGATGATGATACCTCAAGAGAGTTGATACTTG AACAAATCAACGCTGGATTCGATTGGACGCAGAAGGAGTACTTGGAAGCAGGGCAGAGGTATGAAGAAGCCCTTCAAATCAAACCCGACTTTTACGAAGG TCTTCTAGCCTTGGGACAGCAGCAGTTCGAGAGGGCCAGACTTACTTGGTACTATGCACTTAGCAACAAAGTTAATTTGTCAACTTGGTCTTATGAAGAG GTCATACAACTCTATAATAGTGCTGAGCAAAATGTAGATAGGGGCCTCCAAATGTGGGAAGCATCACAATCACAACGTATTGCCGATCTGTCTGATAGAA CCAAGATTAAATCTATTCCGCAGGGAACACTGCTAGATGAATTGTTTAAAGACACATCTCCAGAAGATGCTTCTAAGCAGGTTAAAGATTTGAAGTCCCA GATGAATCTGCTGCATGGAACCATCCTCTATGAACGATCCATGATGGAATATAGACTAGGGATCCCTGTCTGGCAGGAATGTTTGGAAGTTTCACTCGAC AAGTTTCAGCTTGCCGGAGCTTCCCATACAGATATAGCTGTGATGATGAAGAACCACATTTCAAATGACAGTTCGATGGATGGATTGGGATTCAAGATTG ATGAGATAGTAGAGGCGTGGAATGACATGAATGAAGCAAAGAAATGGCAGAGACGTGTGCATTCGTTCCGGTTAGAACCATTGCTAAGACGTCGAGTTTC AAAGATCTACCATGCCTTGGAGGTTACATGA
AA sequence Show only first row Show all	>Lus10038106 pacid=23163881 polypeptide=Lus10038106 locus=Lus10038106.g ID=Lus10038106.BGIv1.0 annot-version=v1.0 MRKQQQNGKVSSPKPIMDKDEEVFISLSQELKDEGNKLFQRRDHNGALAKYEKAIKLLPKTHIDVSHLRSNMAACYMQMGLSQYPRAIHECNLALEVTPK YGKALLKRARCYEALNRLDLALRDVGTVLKMEPANVMAFEVWERVKKSLEEKGLTVNDTSIELPPDYAEPPPSCSSTPTKAKTPKEKTTKKKNRESDEKN GTEEKKDSNDQVRENKAEKRNMKLVMGDDIRCAQVPVNCSLLELKEVVCDRFPGSRPVLIKYKDQEGDLITITTDEDLRLAETCASPPQGSFRLYLIEIN SQQDPIVQRLTQAGRMKRVDTRTWNMERDKEMKKGMRYVDEWIVEFAKLFKDHVALDTDTYLGLSDLGIKLYSEAIEETVTNDEAQGLFSTAAENFQEMA ALALFNWGNVHMSRARKKIEFKDDDDTSRELILEQINAGFDWTQKEYLEAGQRYEEALQIKPDFYEGLLALGQQQFERARLTWYYALSNKVNLSTWSYEE VIQLYNSAEQNVDRGLQMWEASQSQRIADLSDRTKIKSIPQGTLLDELFKDTSPEDASKQVKDLKSQMNLLHGTILYERSMMEYRLGIPVWQECLEVSLD KFQLAGASHTDIAVMMKNHISNDSSMDGLGFKIDEIVEAWNDMNEAKKWQRRVHSFRLEPLLRRRVSKIYHALEVT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G25290		Phox1	Phox1, Octicosapeptide/Phox/Be...		Lus10038106 [exp]	0	1
AT3G03790			ankyrin repeat family protein ...		Lus10013648 [exp]	1.4	0.9355
AT1G18670		IBS1	IMPAIRED IN BABA-INDUCED STERI...		Lus10015727 [exp]	4.2	0.8843
AT1G04120		ATABCC5, ABCC5,...	MULTIDRUG RESISTANCE PROTEIN 5...		Lus10024965 [exp]	4.2	0.8983
AT4G28600		NPGR2	no pollen germination related ...		Lus10022897 [exp]	5.6	0.8320
AT1G55620		CLCF, ATCLC-F, ...	chloride channel F (.1.2)		Lus10032888 [exp]	5.7	0.8827
AT2G40130			Double Clp-N motif-containing ...		Lus10028282 [exp]	8.4	0.8771
AT2G40070			unknown protein		Lus10011374 [exp]	9.2	0.8681
AT3G03790			ankyrin repeat family protein ...		Lus10010659 [exp]	9.5	0.8794
AT2G26100			Galactosyltransferase family p...		Lus10023955 [exp]	10.0	0.8794
AT4G32140			EamA-like transporter family (...		Lus10026249 [exp]	10.5	0.8694

Compare expression of checked genes

Lus10038106 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.