Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15740 600 / 0 Leucine-rich repeat family protein (.1) AT4G23840 103 / 3e-23 Leucine-rich repeat (LRR) family protein (.1) AT2G25490 54 / 1e-07 FBL6, EBF1 EIN3-binding F box protein 1 (.1) AT1G75820 53 / 4e-07 ATCLV1, FLO5, FAS3, CLV1 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) AT1G53730 53 / 5e-07 SRF6 STRUBBELIG-receptor family 6 (.1.2) AT5G49290 53 / 5e-07 ATRLP56 receptor like protein 56 (.1) AT1G80570 52 / 5e-07 RNI-like superfamily protein (.1.2.3) AT1G75640 53 / 6e-07 Leucine-rich receptor-like protein kinase family protein (.1) AT4G39270 52 / 7e-07 Leucine-rich repeat protein kinase family protein (.1.2) AT5G27920 51 / 2e-06 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008036 [exp] 932 / 0 AT1G15740 675 / 0.0 Leucine-rich repeat family protein (.1) Lus10025751 [exp] 555 / 0 AT1G15740 660 / 0.0 Leucine-rich repeat family protein (.1) Lus10035912 [exp] 531 / 0 AT1G15740 637 / 0.0 Leucine-rich repeat family protein (.1) Lus10001831 [exp] 105 / 1e-23 AT4G23840 512 / 1e-175 Leucine-rich repeat (LRR) family protein (.1) Lus10003886 [exp] 61 / 1e-09 AT4G23840 281 / 8e-90 Leucine-rich repeat (LRR) family protein (.1) Lus10002165 [exp] 61 / 2e-09 AT2G25490 684 / 0.0 EIN3-binding F box protein 1 (.1) Lus10030102 [exp] 59 / 5e-09 AT2G25490 683 / 0.0 EIN3-binding F box protein 1 (.1) Lus10023272 [exp] 59 / 1e-08 AT5G36930 423 / 4e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10012214 [exp] 56 / 5e-08 AT5G01720 731 / 0.0 RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G061700 [exp] 743 / 0 AT1G15740 612 / 0.0 Leucine-rich repeat family protein (.1) Potri.001G092000 [exp] 101 / 2e-22 AT4G23840 480 / 7e-164 Leucine-rich repeat (LRR) family protein (.1) Potri.018G118035 [exp] 67 / 2e-11 AT1G07390 465 / 1e-146 receptor like protein 1 (.1.2.3) Potri.018G120700 [exp] 64 / 2e-10 AT1G07390 457 / 8e-144 receptor like protein 1 (.1.2.3) Potri.018G120827 [exp] 59 / 4e-09 AT1G58190 97 / 4e-21 receptor like protein 9 (.1.2) Potri.019G123400 [exp] 59 / 5e-09 AT5G01720 604 / 0.0 RNI-like superfamily protein (.1) Potri.001G065327 [exp] 59 / 6e-09 AT1G07390 352 / 3e-105 receptor like protein 1 (.1.2.3) Potri.013G013100 [exp] 58 / 1e-08 AT5G27920 631 / 0.0 F-box family protein (.1) Potri.001G400500 [exp] 56 / 7e-08 AT1G45616 463 / 2e-148 receptor like protein 6 (.1) Potri.012G010445 [exp] 56 / 9e-08 AT3G28890 360 / 4e-111 receptor like protein 43 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10038107 pacid=23163915 polypeptide=Lus10038107 locus=Lus10038107.g ID=Lus10038107.BGIv1.0 annot-version=v1.0 ATGGAACTATGCGTGCACAAAATATGCAAGGAAATTGGAAGGTATAAGTCACTGTCGGTACTTCCTAGGGATATTAGCCAGCAGATATTCAATGAGTTGG TGTCGACACATTGTCTCAACGAGGATTCTCTTCCAGCTTTTGTCGATTGTGCTCTTCAGGATGTTCATTTGGGAGATTATCCTGGGGTGAAGGATGGCTG GTTGGATGTTATATCTTCGCAAGGAACGTCTCTACTTTCTCTAGACCTTTCTGATTCCGAGATTACAGATGCTGGGTTGGCTTGCCTCAAAGATTGTCCA GACCTCCAGGCCTTGTCTCTAAATTATTGTGAATATATTACCGAGCATGGGTTGAAACACATCAATGGTCTTACGAACTTGACTTCTTTGAGTTTCAAAA GGAGCAACACGATCACTGCTGAAGGGATGTGTGCCTTTTCCAACTTGATTAATTTAGAGAAGTTGGACCTGGAGAGATGCTCACAGATTCATGGTGGACT GTTTCATCTAAAAGGATTAACAAAACTGGAGGCTCTTAATATTAGATGCTGTAAATGCATTACAGATCTTGACATGAAGGCTCTCACTGGACTCACAAAT CTGAAGGAACTGCAACTATCCAACTGTAGCATCACTGACTTTGGAGTTTCCTTATTGAGAGGTTTAAAGAAGATTGTCATGTTGAACTTGGAAGGTTGTA ATGTGACCACTGCATGTTTGGATTCGCTTTCAGAGCTTGCCAGCCTTGCATACCTGAACTTAAGCAGATGTGGCCTATCAGATGAGGGATGTGAGAAGTT TTCAGAGCTGAAGAAGTTGAAGGTTTTGAGTTTGGCATTCAATAACATTACAGATGCTATTCTGGTATATCTAAAAGGCTTAAAACATTTAGAGAGCTTG AACCTGGATTCTTGTAAGATTGGCAATGAAGGGCTAGTGAATTTGTCTGGACTTCCACTCAAAAGTTTGGAGTTGTCTGATACTGAAGTTGGAAGCAGCA GTCTTCGCTATCTTTCAGGTTTAACTCAACTTGAGAGCTTAAATCTGTCATTCACCTTGGTAACTGATGGTGGTTTAAGGAGGTTATCCGGGGTGACATC TCTGCGATCACTCAACTTAGACGCCCGCCAGATTACAGATGCTGGACTTGCAGGACTCACAAATCTGACCGGGCTGACACATCTGGATCTTTTTGGAGCT CGCATTTCAGACACTGGAACAAATTACTTGCGACACTTCAAGAATCTGCAATCCTTGGAAATATGTGGCGGAGGAATAACTGATGCTGGAGTGAAGAACA TAAAAGATCTTTCTTGCCTAACCGTTTTGAATCTGTCACAGAACAGCAACCTGACAGACAAAACCTTGGAGATGATATCTGGGTTGGAGGAATTGGTGTC ACTCAATGTTTCGAATTCCCTGATAACCAATAAAGGTCTGCAGCATTTGAAGCCACTGAAGAACCTACGCTCCCTAACCTTGGAGTCATGTAAGGTGACT GCTGCCGAAATAAGGAAGCTTCAGTTGACTGAACTCCCTGATTTGGTGAGCTTCCGACCAGAATAA
AA sequence Show only first row Show all	>Lus10038107 pacid=23163915 polypeptide=Lus10038107 locus=Lus10038107.g ID=Lus10038107.BGIv1.0 annot-version=v1.0 MELCVHKICKEIGRYKSLSVLPRDISQQIFNELVSTHCLNEDSLPAFVDCALQDVHLGDYPGVKDGWLDVISSQGTSLLSLDLSDSEITDAGLACLKDCP DLQALSLNYCEYITEHGLKHINGLTNLTSLSFKRSNTITAEGMCAFSNLINLEKLDLERCSQIHGGLFHLKGLTKLEALNIRCCKCITDLDMKALTGLTN LKELQLSNCSITDFGVSLLRGLKKIVMLNLEGCNVTTACLDSLSELASLAYLNLSRCGLSDEGCEKFSELKKLKVLSLAFNNITDAILVYLKGLKHLESL NLDSCKIGNEGLVNLSGLPLKSLELSDTEVGSSSLRYLSGLTQLESLNLSFTLVTDGGLRRLSGVTSLRSLNLDARQITDAGLAGLTNLTGLTHLDLFGA RISDTGTNYLRHFKNLQSLEICGGGITDAGVKNIKDLSCLTVLNLSQNSNLTDKTLEMISGLEELVSLNVSNSLITNKGLQHLKPLKNLRSLTLESCKVT AAEIRKLQLTELPDLVSFRPE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15740			Leucine-rich repeat family pro...		Lus10038107 [exp]	0	1
AT1G15740			Leucine-rich repeat family pro...		Lus10008036 [exp]	1.0	0.9836
AT4G27745			Yippee family putative zinc-bi...		Lus10007773 [exp]	1.4	0.9647
AT2G26000		BRIZ2	BRAP2 RING ZnF UBP domain-cont...		Lus10035023 [exp]	2.4	0.9511
AT3G50150			Plant protein of unknown funct...		Lus10039369 [exp]	3.5	0.9499
AT4G14290			alpha/beta-Hydrolases superfam...		Lus10001114 [exp]	5.0	0.9362
AT5G09850			Transcription elongation facto...		Lus10002088 [exp]	5.7	0.9478
AT1G05620		NSH2, URH2	nucleoside hydrolase 2, uridin...		Lus10022062 [exp]	6.0	0.9465
AT5G65210	bZIP	TGA1	bZIP transcription factor fami...		Lus10037550 [exp]	6.5	0.9489
AT1G18470			Transmembrane Fragile-X-F-asso...		Lus10042969 [exp]	9.5	0.9478
AT2G45170		ATATG8E	AUTOPHAGY 8E (.1.2)		Lus10004352 [exp]	10.9	0.9114

Compare expression of checked genes

Lus10038107 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.