Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20350 766 / 0 TIP1 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1) AT2G14255 460 / 2e-157 Ankyrin repeat family protein with DHHC zinc finger domain (.1) AT2G03430 82 / 2e-17 Ankyrin repeat family protein (.1) AT4G24630 84 / 4e-17 DHHC-type zinc finger family protein (.1) AT5G50020 84 / 7e-17 DHHC-type zinc finger family protein (.1.2) AT5G41060 81 / 2e-16 DHHC-type zinc finger family protein (.1.2) AT3G26935 81 / 5e-16 DHHC-type zinc finger family protein (.1) AT3G04970 79 / 8e-16 DHHC-type zinc finger family protein (.1.2) AT3G48760 80 / 1e-15 DHHC-type zinc finger family protein (.1) AT3G56930 78 / 4e-15 DHHC-type zinc finger family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008037 [exp] 903 / 0 AT5G20350 905 / 0.0 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1) Lus10012455 [exp] 433 / 1e-146 AT2G14255 597 / 0.0 Ankyrin repeat family protein with DHHC zinc finger domain (.1) Lus10020505 [exp] 271 / 2e-85 AT2G14255 389 / 2e-131 Ankyrin repeat family protein with DHHC zinc finger domain (.1) Lus10028687 [exp] 83 / 2e-16 AT4G24630 563 / 0.0 DHHC-type zinc finger family protein (.1) Lus10032009 [exp] 82 / 2e-16 AT3G26935 694 / 0.0 DHHC-type zinc finger family protein (.1) Lus10035177 [exp] 82 / 3e-16 AT3G26935 694 / 0.0 DHHC-type zinc finger family protein (.1) Lus10012096 [exp] 81 / 4e-16 AT3G56930 478 / 7e-167 DHHC-type zinc finger family protein (.1.2) Lus10028737 [exp] 81 / 4e-16 AT4G24630 582 / 0.0 DHHC-type zinc finger family protein (.1) Lus10010447 [exp] 82 / 6e-16 AT3G56930 451 / 3e-152 DHHC-type zinc finger family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G121200 [exp] 835 / 0 AT5G20350 951 / 0.0 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1) Potri.006G061800 [exp] 825 / 0 AT5G20350 959 / 0.0 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1) Potri.001G287000 [exp] 524 / 0 AT2G14255 671 / 0.0 Ankyrin repeat family protein with DHHC zinc finger domain (.1) Potri.005G041000 [exp] 88 / 1e-18 AT3G04970 520 / 0.0 DHHC-type zinc finger family protein (.1.2) Potri.016G025100 [exp] 89 / 2e-18 AT3G56930 497 / 3e-173 DHHC-type zinc finger family protein (.1.2) Potri.010G161300 [exp] 83 / 9e-18 AT2G03430 356 / 1e-125 Ankyrin repeat family protein (.1) Potri.007G077000 [exp] 84 / 2e-17 AT4G24630 446 / 6e-157 DHHC-type zinc finger family protein (.1) Potri.005G195300 [exp] 84 / 4e-17 AT4G24630 555 / 0.0 DHHC-type zinc finger family protein (.1) Potri.003G160600 [exp] 84 / 4e-17 AT3G26935 435 / 1e-150 DHHC-type zinc finger family protein (.1) Potri.006G027400 [exp] 83 / 8e-17 AT3G56930 439 / 9e-151 DHHC-type zinc finger family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat CL0465 [flax] [poplar] PF01529 [flax] [poplar] DHHC DHHC palmitoyltransferase
Representative CDS sequence Show only first row Show all	>Lus10038108 pacid=23163641 polypeptide=Lus10038108 locus=Lus10038108.g ID=Lus10038108.BGIv1.0 annot-version=v1.0 ATGAACATTGAATGTCAGCACGGAGGAGATGTCAATGTAACGGATCACACGGGTCAGACGGCACTTCATTGGAGTGCAGTTCGGGGCGCAATCCAAGTTG CGGAACTTCTACTACAAGAGGGTGCTCGAGTTAATGTTGCTGATATGTATGGTTATCAGACTACACATGTTGCAGCACAATATGGCCAGACAGCTTTCCT GTATCATGTCGTCTCAAAATGGAATGCGGATCCTGATATTCCTGATAATGATGGAAGAAGTCCCTTGCATTGGGCGGCTTATAAGGGTTTTGCCGATTGC ATACGCTTGTTATTGTTTCTGGATGCTTATAGGGGACGGCAAGATAAAGAAGGTTGCACACCTCTCCACTGGGCTGCAATAAGGGGTAACTTGGAGGCAT GCACTGTGTTAGTACTAGCTGGCAAGAAGGAGGACTTAGTAATCACAGATAACACGGGGATGACTCCAGCTCAACTTGCTTCTGACAAGAACCACAGACA AGTTGCTTTTTTCCTTGGAAATGCTAGAAGGCTGCTTGATAGACGCTGTGATGGCACCAGCCGGTTGGGACGTCTGTCAAAGTTAGGGCTTGCTCCTGTG CTTTGGTGTATAATTATTATTCTTTTGATCGTCTATATCCATTCAGTCATCATGGCTGAAAATCTGCCCAAACTGACAGCTGGCTTTGGCCTTTTCGCTT GGCTTGGGGTATTTCTTGCAACCAGTGGGCTTGTGACGTTTTACAGGTGTAGCAGGAAGGATCCAGGATATATTAAAATGAATGTGCATGATCCGCAAAA CATGAAAGATGATGAACCTCTTCTGAAAATCGAGATAAATAATCCTGCATTGACTTCTGGGAATTGGGCTCAGCTATGTCCAACATGCAAGATTGTAAGA CCACTTCGTGCTAAGCACTGTTCCACATGTGATCGATGTGTTGAACAATTTGACCATCATTGTCCGTGGGTGTCAAATTGCATAGGCAAGAAAAACAAGT GGGATTTCTTTTCATTTCTTCTCTTAGAAGTCTCTGCAATGTTGATAACTGGTGGCGTGGCTCTCACAAGAATATTGTCGGATCCTGTGGCTCCATCAAC ATTTGGAGGATGGTTAAATTATTCAGCTATTCATCATGGTGGCGCCATAAGTTTTCTGGTGGTGGACTTTTTCCTCTTCTTTGGTGTCGCTGTTCTAACC ATTGTGCAAGCTTCTCAGATATCCCGCAACATAACAACAAACGAGATGGCAAACGCGATGCGTTACAGCTACCTAAAAGGCCCAGGAGGTCGGTTCAGGA ACCCCTACGACCATGGATGCAGGAAGAACTGCTCGGATTTCCTAATCTCCGGCTACAACGTAGATGTTGAGTTTGTGGAGGAAGGGGCAGAAGGGATTGG AATGATGCAGATGACGAGGCACTCAACTGCGCAAAACGGGGAAGCCCAGATCCCACATCATGCTGCCAATGGGAACAGCCATGTCGCCATCAATGTAAAC AACAACTATCAACATGCACATTCTTCGAATTGCAGCCATAGTAGCAGTAGCCAGGCAAAATGTAAAACAGAAAAGGTACCTTTGGGTTTAGGGCTTGGTA TCGGCAGGAATGGTGGCCGTTGTTAA
AA sequence Show only first row Show all	>Lus10038108 pacid=23163641 polypeptide=Lus10038108 locus=Lus10038108.g ID=Lus10038108.BGIv1.0 annot-version=v1.0 MNIECQHGGDVNVTDHTGQTALHWSAVRGAIQVAELLLQEGARVNVADMYGYQTTHVAAQYGQTAFLYHVVSKWNADPDIPDNDGRSPLHWAAYKGFADC IRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVLAGKKEDLVITDNTGMTPAQLASDKNHRQVAFFLGNARRLLDRRCDGTSRLGRLSKLGLAPV LWCIIIILLIVYIHSVIMAENLPKLTAGFGLFAWLGVFLATSGLVTFYRCSRKDPGYIKMNVHDPQNMKDDEPLLKIEINNPALTSGNWAQLCPTCKIVR PLRAKHCSTCDRCVEQFDHHCPWVSNCIGKKNKWDFFSFLLLEVSAMLITGGVALTRILSDPVAPSTFGGWLNYSAIHHGGAISFLVVDFFLFFGVAVLT IVQASQISRNITTNEMANAMRYSYLKGPGGRFRNPYDHGCRKNCSDFLISGYNVDVEFVEEGAEGIGMMQMTRHSTAQNGEAQIPHHAANGNSHVAINVN NNYQHAHSSNCSHSSSSQAKCKTEKVPLGLGLGIGRNGGRC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20350		TIP1	TIP GROWTH DEFECTIVE 1, Ankyri...		Lus10038108 [exp]	0	1
AT5G20350		TIP1	TIP GROWTH DEFECTIVE 1, Ankyri...		Lus10008037 [exp]	1.0	0.9183
AT1G23550		SRO2	similar to RCD one 2 (.1)		Lus10030878 [exp]	2.6	0.9004
AT1G21840		UREF	urease accessory protein F (.1...		Lus10027319 [exp]	3.6	0.8908
AT5G37370		ATSRL1	PRP38 family protein (.1.2.3.4...		Lus10031361 [exp]	6.6	0.9041
AT1G34780		ATAPRL4	APR-like 4 (.1.2)		Lus10036486 [exp]	8.8	0.9160
AT5G22040			unknown protein		Lus10008373 [exp]	8.9	0.9027
AT3G62220			Protein kinase superfamily pro...		Lus10009983 [exp]	13.0	0.9000
AT5G15270			RNA-binding KH domain-containi...		Lus10036767 [exp]	13.3	0.9115
AT1G11480			eukaryotic translation initiat...		Lus10039708 [exp]	14.8	0.8929
AT1G55880			Pyridoxal-5'-phosphate-depende...		Lus10032583 [exp]	17.3	0.8809

Compare expression of checked genes

Lus10038108 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.