Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G34940 648 / 0 ATGUS3 glucuronidase 3 (.1.2.3) AT5G07830 489 / 4e-169 ATGUS2 glucuronidase 2 (.1) AT5G61250 489 / 4e-169 ATGUS1 glucuronidase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008038 [exp] 1013 / 0 AT5G34940 671 / 0.0 glucuronidase 3 (.1.2.3) Lus10008823 [exp] 837 / 0 AT5G34940 677 / 0.0 glucuronidase 3 (.1.2.3) Lus10001923 [exp] 507 / 9e-177 AT5G34940 535 / 0.0 glucuronidase 3 (.1.2.3) Lus10003468 [exp] 498 / 3e-172 AT5G07830 691 / 0.0 glucuronidase 2 (.1) Lus10015737 [exp] 497 / 4e-172 AT5G07830 690 / 0.0 glucuronidase 2 (.1) Lus10021652 [exp] 470 / 2e-161 AT5G07830 722 / 0.0 glucuronidase 2 (.1) Lus10034707 [exp] 464 / 1e-159 AT5G07830 720 / 0.0 glucuronidase 2 (.1) Lus10037110 [exp] 457 / 9e-157 AT5G07830 528 / 0.0 glucuronidase 2 (.1) Lus10036963 [exp] 449 / 2e-153 AT5G07830 524 / 0.0 glucuronidase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G062200 [exp] 760 / 0 AT5G34940 729 / 0.0 glucuronidase 3 (.1.2.3) Potri.018G121500 [exp] 746 / 0 AT5G34940 734 / 0.0 glucuronidase 3 (.1.2.3) Potri.018G024200 [exp] 622 / 0 AT5G34940 664 / 0.0 glucuronidase 3 (.1.2.3) Potri.010G160800 [exp] 476 / 3e-164 AT5G61250 561 / 0.0 glucuronidase 1 (.1.2) Potri.015G049100 [exp] 459 / 3e-157 AT5G07830 731 / 0.0 glucuronidase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF03662 [flax] [poplar] Glyco_hydro_79n Glycosyl hydrolase family 79, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10038109 pacid=23163795 polypeptide=Lus10038109 locus=Lus10038109.g ID=Lus10038109.BGIv1.0 annot-version=v1.0 ATGGGTTCTCAGATTCTGGTTGTGGGTTTTCTTGTTATGGTCTGTATCATTGTTCCGGTGAGGTCACAAGAAAATGTTGTTCAAGGAACTGTAGTGGTTG ATGGAACAACTGTCATTGGAAGAACTGATGAAGATTTCATCTGTGCCACTATGGATTGGTGGCCTCCTGAGAAATGCGACTATGGCACTTGTGCCTGGGA TCATACTTCTCTTATCAATCTCGATCTCAATGACCAAATTCTGCTCAAGGCCATACAAGCTTTTTCACCATTGAAGATCAGGTTGGGAGGGACATTGCAA GACAAAGTCATATACGACACACCAGACAACCACCAGCCTTGTGCTCAGTTTGTGAAGAACACTAGTGAGCTGTTTGGTTTCACTCAAGGTTGTTTGCCCA TGTACAGATGGGATGAATTGAATTCATTCTTCACCAAATCTGGGGCTAAGATCATATTTGGACTGAATGCTTTAATGGGGAGGACCATTCAGCCAGATGG TTCTGCAGCTGGTCCTTGGAACTATTCAAATGCTCAATCTTTTATTACCTATTCAGTTAGACACAATTACTCTATTCACGGCTGGGAGCTTGGAAATGAG TTGAGTGGAAGTGGAGTGGGAACCAGAGTTCCAGCAGATCAGTATGCTTCTGATACAATATCCCTGCACGACATTGTGGATAACGTTTACAGTGGCATTT TACCGAAACCACTTGTTCTGGCGCCTGCTGGATTCTATGACTCAAATTGGTTCAGGACATTGATAGACAAAGCAGGAAGTTCTCTGGATGTTGTCACTCA CCACATCTACAATCTTGGTCCAGGAGTAGACGCTCATCTGGTAGAGAAGATTCTTAACCCAGCAGTTCTTGACAATGTGGTTGGTGCATTCCAAGGCCTG CAGAGCCTTCTCAGAATCTCTCAATCTTCAGCAACTGCATGGGTTGGTGAGGCTGGAGGTGCTTACAACAGCGGTCGCAACCTAGTCTCAAATGCATTTG TCTATAGCTTTTGGTACCTGGATCAGCTTGGACTTGCGGCTGCACATGACACCAAAACTTACTGCAGACAGTCACTGATTGGGGGCAACTATGGCCTGCT CAACACCACCACATATGTGCCAAACCCTGACTATTACAGTGCTCTTCTTTGGCATCGATTGATGGGGCGTAACTCTTTGTCAACAAGCTTTTCTGGATCA AATAAGCTACGTGTATATGCTCACTGTGCAAAATATTCTAAAAGTTTTGTGTTGCTGCTAATTAACCTGGACGACAGCACAAAATTTGAAGTCAACGTAG GACTTAACACTACCTTGATGCTGCAAAATAAATACAGTTCACACAGGCATCATAATCACAGAACAGAAATCATTCAGCTTCCTCCTCATCGTTCCAAGAA TGGTCAAATGAGAGATGAATACCATCTAACAGCTGAAGATGGAAACTTGCACAGCCAAACAATGCTACTTAATGGGAAGAGCTTAAAAGTAAATTCAGAT GGGGACATACCTGAATTCGAGCCTTTACATGTAAATTCGTCAGAGCCAATATCTGTAGCTCCTCTATCCATTGTATTTGCTCGTGTTCCATATATTCTCC CTGCTTGCAGGTAG
AA sequence Show only first row Show all	>Lus10038109 pacid=23163795 polypeptide=Lus10038109 locus=Lus10038109.g ID=Lus10038109.BGIv1.0 annot-version=v1.0 MGSQILVVGFLVMVCIIVPVRSQENVVQGTVVVDGTTVIGRTDEDFICATMDWWPPEKCDYGTCAWDHTSLINLDLNDQILLKAIQAFSPLKIRLGGTLQ DKVIYDTPDNHQPCAQFVKNTSELFGFTQGCLPMYRWDELNSFFTKSGAKIIFGLNALMGRTIQPDGSAAGPWNYSNAQSFITYSVRHNYSIHGWELGNE LSGSGVGTRVPADQYASDTISLHDIVDNVYSGILPKPLVLAPAGFYDSNWFRTLIDKAGSSLDVVTHHIYNLGPGVDAHLVEKILNPAVLDNVVGAFQGL QSLLRISQSSATAWVGEAGGAYNSGRNLVSNAFVYSFWYLDQLGLAAAHDTKTYCRQSLIGGNYGLLNTTTYVPNPDYYSALLWHRLMGRNSLSTSFSGS NKLRVYAHCAKYSKSFVLLLINLDDSTKFEVNVGLNTTLMLQNKYSSHRHHNHRTEIIQLPPHRSKNGQMRDEYHLTAEDGNLHSQTMLLNGKSLKVNSD GDIPEFEPLHVNSSEPISVAPLSIVFARVPYILPACR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G34940		ATGUS3	glucuronidase 3 (.1.2.3)		Lus10038109 [exp]	0	1
AT5G34940		ATGUS3	glucuronidase 3 (.1.2.3)		Lus10008038 [exp]	1.0	0.9495
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10037663 [exp]	5.8	0.9043
AT1G06330			Heavy metal transport/detoxifi...		Lus10020704 [exp]	9.0	0.8999
AT3G17970		ATTOC64-III	translocon at the outer membra...		Lus10042001 [exp]	12.4	0.8705
AT2G14530		TBL13	TRICHOME BIREFRINGENCE-LIKE 13...		Lus10012477 [exp]	19.4	0.8934
AT2G02360		ATPP2-B10	phloem protein 2-B10 (.1)		Lus10003444 [exp]	23.1	0.8802
AT1G22490	bHLH	bHLH094	basic helix-loop-helix (bHLH) ...		Lus10000332 [exp]	23.9	0.8465
AT5G15780			Pollen Ole e 1 allergen and ex...		Lus10005086 [exp]	25.1	0.8632
AT4G39900			unknown protein		Lus10024045 [exp]	25.7	0.8956
AT1G70560		CKRC1, WEI8, TA...	WEAK ETHYLENE INSENSITIVE 8, S...		Lus10006199 [exp]	35.2	0.8726

Compare expression of checked genes

Lus10038109 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.