Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20380 560 / 0 PHT4;5 phosphate transporter 4;5 (.1) AT2G29650 232 / 1e-69 PHT4;1, ANTR1 anion transporter 1, phosphate transporter 4;1 (.1.2.3) AT4G00370 226 / 3e-67 PHT4;4, ANTR2 anion transporter 2, Major facilitator superfamily protein (.1) AT5G44370 142 / 3e-37 PHT4;6 phosphate transporter 4;6 (.1) AT3G46980 134 / 1e-33 PHT4;3 phosphate transporter 4;3 (.1.2.3) AT2G38060 105 / 4e-24 PHT4;2 phosphate transporter 4;2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008040 [exp] 442 / 8e-155 AT5G20380 260 / 4e-84 phosphate transporter 4;5 (.1) Lus10008039 [exp] 399 / 1e-136 AT5G20380 437 / 2e-152 phosphate transporter 4;5 (.1) Lus10018218 [exp] 246 / 1e-74 AT2G29650 761 / 0.0 anion transporter 1, phosphate transporter 4;1 (.1.2.3) Lus10040686 [exp] 246 / 2e-72 AT2G29650 760 / 0.0 anion transporter 1, phosphate transporter 4;1 (.1.2.3) Lus10036366 [exp] 199 / 9e-57 AT4G00370 812 / 0.0 anion transporter 2, Major facilitator superfamily protein (.1) Lus10014769 [exp] 178 / 1e-47 AT4G00370 662 / 0.0 anion transporter 2, Major facilitator superfamily protein (.1) Lus10013836 [exp] 149 / 2e-39 AT5G44370 714 / 0.0 phosphate transporter 4;6 (.1) Lus10026551 [exp] 148 / 6e-39 AT5G44370 713 / 0.0 phosphate transporter 4;6 (.1) Lus10040703 [exp] 145 / 2e-37 AT3G46980 673 / 0.0 phosphate transporter 4;3 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G121600 [exp] 614 / 0 AT5G20380 654 / 0.0 phosphate transporter 4;5 (.1) Potri.006G062300 [exp] 610 / 0 AT5G20380 636 / 0.0 phosphate transporter 4;5 (.1) Potri.001G249800 [exp] 239 / 3e-72 AT2G29650 773 / 0.0 anion transporter 1, phosphate transporter 4;1 (.1.2.3) Potri.014G085700 [exp] 232 / 5e-69 AT4G00370 841 / 0.0 anion transporter 2, Major facilitator superfamily protein (.1) Potri.009G043800 [exp] 229 / 1e-68 AT2G29650 778 / 0.0 anion transporter 1, phosphate transporter 4;1 (.1.2.3) Potri.001G248200 [exp] 131 / 2e-32 AT3G46980 675 / 0.0 phosphate transporter 4;3 (.1.2.3) Potri.009G168200 [exp] 129 / 2e-32 AT5G44370 676 / 0.0 phosphate transporter 4;6 (.1) Potri.016G111000 [exp] 100 / 2e-22 AT2G38060 687 / 0.0 phosphate transporter 4;2 (.1) Potri.018G083200 [exp] 43 / 0.0004 AT1G67300 710 / 0.0 Major facilitator superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF07690 [flax] [poplar] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Lus10038110 pacid=23163903 polypeptide=Lus10038110 locus=Lus10038110.g ID=Lus10038110.BGIv1.0 annot-version=v1.0 ATGGCGAAATTTAGTCTCAAAGCTTACCACTTTTGCTCTCTTTCTCAAACTACGCTCAGGAATTCCACCATCTCCAGGAAGAACTCGTTCGGAAGAGGGG GATTTCAAGGTTTTGAGTCGATACCCTGTTTAAAGTTTCGTGCCTTTTGTACTATTAGAGGGAAAGAGGATGTAAAGGATGAGGAAAAGAGGGTTCCAGT TGTTGCTCCTCTTCAGGGAGTGAATGGACGAGTCCAGCGACTTACTGAGTTTGAACAGAAGAGACTCGATGAAGGTAAAGAGGGGTTTGATTGGAATTGG CCGCCGTGGAACAATCTGCCTCAGAGATATAAGCTTATTGGCACTACTTCGCTTGCCTTTGTTATTTGTAACATGGATAAGGTTAACTTGAGTGTTGCTA TAATTCCAATGTCACACCAGTTTGGGTGGAATTCTTCAGTCGCTGGATTAGTGCAATCTTCCTTCTTTTGGGGTTATGCTTTGAGCCAGTTGCCTGGAGG TTGGCTTTCCAAGATATTTGGTGGCAGAAAAGTACTTCAGATTGGAGTGTTGACTTGGTCAATAGCTACAGCATTGGTCCCTTTGCTTGCCGGATCCATG CCTGGACTTGTACTCTCTAGGATTTTGGTTGGTATAGGAGAAGGCGTTTCCCCATCAGCTGCAACTGACCTTATTGCCAGGCATGTACCATGTGCAACTC TCTTGGACTATACTCCCATCAAAATTGTATCTGTATCATTCATACACTTCACATTCCTCAGGTCAATGCCTGTACAAGAACGAACACGGGCTGTAGCATT TGTCTTTGGTGGACTAAGTGTGGGAAGTGTAACCGGGCTACTATTGGCTCCTCCCCTCATTCAAAATTTTGGTTGGGAAGCTGTATTTTACATATTCGGG TTACTTGGACTAGGCTGGTTTCTAGGATTTCAGTCTTTGGCCGAACAAAAAGCTTCATATGCTGCTGAACCTGCTGCAAATTCTGCTCTCGAGAGAACAA AACCCCAAAATTCTTCCATTGCGGAGATTGGTGATTCACTGAAGGAGGTGCCATGGAAGGCTTTTTTCAAGAGTCCAGCTGTATGGGCAATGATATACGC TCACTTTTGCGGTAGTTGGGGGCACTATACATGTTTGTCATGGCTTCCTACTTATTTCAGTGAGGCGCTGGACCTAAACTTGACAGAGGCTGCATGGGTA TCCATTCTTCCACCCTTCGCTTCAGTTTTTGTGACCAACCTCGTGGCACAGCTAGCTGACAAATTGATTTCCAGTGGAGTTGAAACCACAGTGTTGGATC TAGGATCACCACCATGGGAAGTTGTGGGGATCCTCAGCACTGGCTTGGCCCTCTCAAGCTTTGCTTTGTCTGGATTGTATTGTACACACCAGGATATCTC CCCTGAATATGCAAGCATACTCCTGGGTATAACCAACACTGTTGGAGCAATCCCTGGAATTGTAGGTGTTGTCTTGACTGGCTACTTACTTGATGCAACT CATTCATGGAGTATATCATTGTTTGCACCATCCATCTTCTTCTACTTGACCGGCACAGTTATATGGTTGGTATTTGCTAGTAGTAAGCCACAAAACTTCT CTAGCTGA
AA sequence Show only first row Show all	>Lus10038110 pacid=23163903 polypeptide=Lus10038110 locus=Lus10038110.g ID=Lus10038110.BGIv1.0 annot-version=v1.0 MAKFSLKAYHFCSLSQTTLRNSTISRKNSFGRGGFQGFESIPCLKFRAFCTIRGKEDVKDEEKRVPVVAPLQGVNGRVQRLTEFEQKRLDEGKEGFDWNW PPWNNLPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHQFGWNSSVAGLVQSSFFWGYALSQLPGGWLSKIFGGRKVLQIGVLTWSIATALVPLLAGSM PGLVLSRILVGIGEGVSPSAATDLIARHVPCATLLDYTPIKIVSVSFIHFTFLRSMPVQERTRAVAFVFGGLSVGSVTGLLLAPPLIQNFGWEAVFYIFG LLGLGWFLGFQSLAEQKASYAAEPAANSALERTKPQNSSIAEIGDSLKEVPWKAFFKSPAVWAMIYAHFCGSWGHYTCLSWLPTYFSEALDLNLTEAAWV SILPPFASVFVTNLVAQLADKLISSGVETTVLDLGSPPWEVVGILSTGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAIPGIVGVVLTGYLLDAT HSWSISLFAPSIFFYLTGTVIWLVFASSKPQNFSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20380		PHT4;5	phosphate transporter 4;5 (.1)		Lus10038110 [exp]	0	1
AT5G20380		PHT4;5	phosphate transporter 4;5 (.1)		Lus10008040 [exp]	2.0	0.8946
AT3G11560			LETM1-like protein (.1.2.3.4)		Lus10017005 [exp]	2.2	0.9117
AT3G11560			LETM1-like protein (.1.2.3.4)		Lus10021329 [exp]	2.8	0.8903
AT5G51290			Diacylglycerol kinase family p...		Lus10016714 [exp]	3.0	0.8933
AT2G46915			Protein of unknown function (D...		Lus10007214 [exp]	3.9	0.8847
AT5G35970			P-loop containing nucleoside t...		Lus10024975 [exp]	7.9	0.8762
AT1G65070			DNA mismatch repair protein Mu...		Lus10025647 [exp]	9.9	0.8572
AT1G13040			Pentatricopeptide repeat (PPR-...		Lus10011646 [exp]	10.5	0.8750
AT5G26570		ATGWD3, OK1, PW...	PHOSPHOGLUCAN WATER DIKINASE, ...		Lus10037434 [exp]	10.6	0.8763
AT5G48030		GFA2	gametophytic factor 2 (.1)		Lus10036638 [exp]	11.2	0.8375

Compare expression of checked genes

Lus10038110 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.