Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06450 52 / 4e-08 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G27820 44 / 2e-05 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G27890 43 / 3e-05 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G61470 42 / 5e-05 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G15920 42 / 6e-05 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2) AT2G32070 41 / 0.0002 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G80780 40 / 0.0004 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008043 [exp] 257 / 9e-87 AT1G06450 165 / 5e-48 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10035077 [exp] 214 / 8e-70 AT1G61470 162 / 6e-48 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10017894 [exp] 198 / 5e-66 AT1G06450 47 / 8e-07 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10017905 [exp] 198 / 1e-63 AT1G06450 162 / 5e-48 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10000561 [exp] 193 / 1e-61 AT1G61470 143 / 1e-40 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10001651 [exp] 193 / 8e-61 AT1G61470 167 / 4e-49 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10035078 [exp] 119 / 8e-33 AT1G06450 168 / 2e-49 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10000327 [exp] 110 / 1e-29 AT1G06450 174 / 1e-51 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10038113 [exp] 81 / 6e-19 AT3G44240 140 / 3e-41 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G038700 [exp] 57 / 4e-10 AT1G61470 182 / 8e-56 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.006G187200 [exp] 47 / 2e-06 AT2G32070 403 / 2e-143 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.001G046700 [exp] 44 / 1e-05 AT2G32070 472 / 2e-170 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.003G181100 [exp] 44 / 2e-05 AT1G80780 468 / 1e-168 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2.3) Potri.006G262500 [exp] 43 / 4e-05 AT2G32070 443 / 5e-159 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.018G020900 [exp] 42 / 5e-05 AT2G32070 441 / 2e-158 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038112 pacid=23163758 polypeptide=Lus10038112 locus=Lus10038112.g ID=Lus10038112.BGIv1.0 annot-version=v1.0 ATGGCTAAGTTTTACGAGGAGACAGGGAGTGAAATCGGGCTGCAGAAGTTAGCCGATAATTTGGGGGTGAAGAGAAGAGGGGAAGCTCATACTGCCGCTT CTGATAGTTTGTTGACTGCGCTTGTTTACTTCAAGTTGAAGAACAAGCTGATGATGTTGGGTGTTGGGGAAGAGGCTTATGTTGACTTCGTCTATGGAAT TAGCACAAGGATCTCCAGGAACCAGAAAGAGCCCCTCTTTGTACCAACCACTCGACCAGGTATCGTGTATTATCATCATCATCCTTATCATTTTCATCAG CGGAAGGTGGTGTTGTATCCAATTCCATATCAGCAGCCGAATGTGATGATGGGTCGTCGTTGGGTTGATTGCTCATTAGCTCCAACAGTATTGGTGTTTC ATCTACTGATGATGGATGGATGGAATGCATCTGAATCTCTCTTTTTCTCAATCTCTCTTCCTTATTCTGTATATGATATTCTTTCCTTCTTTCATTCTTT GTAA
AA sequence Show only first row Show all	>Lus10038112 pacid=23163758 polypeptide=Lus10038112 locus=Lus10038112.g ID=Lus10038112.BGIv1.0 annot-version=v1.0 MAKFYEETGSEIGLQKLADNLGVKRRGEAHTAASDSLLTALVYFKLKNKLMMLGVGEEAYVDFVYGISTRISRNQKEPLFVPTTRPGIVYYHHHPYHFHQ RKVVLYPIPYQQPNVMMGRRWVDCSLAPTVLVFHLLMMDGWNASESLFFSISLPYSVYDILSFFHSL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06450			Polynucleotidyl transferase, r...		Lus10038112 [exp]	0	1
AT3G04380		SDG31, SUVR4	SET DOMAIN PROTEIN 31, SET-dom...		Lus10008198 [exp]	35.9	0.4738
					Lus10034814 [exp]	117.1	0.4194
					Lus10012495 [exp]	122.0	0.4242
					Lus10000882 [exp]	200.4	0.3805

Compare expression of checked genes

Lus10038112 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.