Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15690 1124 / 0 FUGU5, AtVHP1;1, AVP-3, ATAVP3, AVP1 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2) AT1G16780 427 / 1e-139 AtVHP2;2, AVPL1 Inorganic H pyrophosphatase family protein (.1) AT1G78920 420 / 3e-137 AtVHP2;1, AVPL1, AVP2 vacuolar H+-pyrophosphatase 2, VACUOLAR-PYROPHOSPHATASE LIKE PROTEIN 1, vacuolar H+-pyrophosphatase 2, vacuolar H+-pyrophosphatase 2 (.1), vacuolar H+-pyrophosphatase 2 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038111 [exp] 1185 / 0 AT1G15690 1385 / 0.0 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2) Lus10039977 [exp] 1150 / 0 AT1G15690 1381 / 0.0 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2) Lus10008828 [exp] 666 / 0 AT1G15690 697 / 0.0 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2) Lus10008044 [exp] 574 / 0 AT1G15690 561 / 0.0 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2) Lus10034800 [exp] 442 / 1e-145 AT1G16780 1434 / 0.0 Inorganic H pyrophosphatase family protein (.1) Lus10008042 [exp] 441 / 6e-144 AT1G15690 422 / 1e-134 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2) Lus10033345 [exp] 345 / 5e-108 AT1G16780 1174 / 0.0 Inorganic H pyrophosphatase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G063000 [exp] 1147 / 0 AT1G15690 1336 / 0.0 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2) Potri.018G119500 [exp] 1137 / 0 AT1G15690 1367 / 0.0 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2) Potri.005G018700 [exp] 1092 / 0 AT1G15690 1248 / 0.0 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2) Potri.013G009400 [exp] 1083 / 0 AT1G15690 1237 / 0.0 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2) Potri.010G254200 [exp] 432 / 4e-142 AT1G16780 1266 / 0.0 Inorganic H pyrophosphatase family protein (.1) Potri.008G003502 [exp] 143 / 3e-38 AT1G16780 477 / 3e-164 Inorganic H pyrophosphatase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03030 [flax] [poplar] H_PPase Inorganic H+ pyrophosphatase
Representative CDS sequence Show only first row Show all	>Lus10038114 pacid=23163638 polypeptide=Lus10038114 locus=Lus10038114.g ID=Lus10038114.BGIv1.0 annot-version=v1.0 ATGCTCGGTGCTGTCACGTCAGTGGTTTCTGGTTTCCTTGGCATGAAAATTGCTACCTATGCAAATGCTAGAACTACTCTTGAGGCAAGGAAAGGAGTCG GGAAGGCTTTCATCATAGCTTTCAGATCTGGTGCAGTGATGGGTTTCCTCCTGGCTGCTAGTGGCCTGCTGGTTCTTTACATTACCATCCTCATTTTCAA GTTGTACTATGGAGATGATTGGGGTGGCCTTTTCGAAGCTATCACTGGTTATGGTCTTGGAGGATCTTCCATGGCTCTCTTTGGCAGAGTTGGAGGTGGA ATTTACACAAAAGCTGCAGATGTTGGTGCTGATCTCGTTGGAAAAGTTGAGAGGAACATTCCTGAGGACGACCCAAGAAATCCTGCTGTGATTGCTGACA ATGTGGGTGATAATGTTGGTGACATTGCCGGTATGGGATCAGATCTCTTCGGCTCATATGCCGAGTCATCATGTGCTGCCCTAGTTGTTGCTTCGATCTC ATCTTTTGGGATTAATCATGAGTTGACAGCAATGCTTTTCCCACTCATTATAAGTTCAATTGGCATCCTAGTTTGTTTGATCACCACTTTGTTTGCGACT GATTTCTTCGAGATCAAGGCTGTAAAAGAAATTGAACCAGCACTGAAAAAGCAGCTCGTCATTTCAACCATTTTGATGACTATTGGGATTGCTATTGCTA GCTGGATCGCTCTTCCATCGTCCTTCACTATTTTCAATTTCGGAACACAGAAAGAAGTGTCAAACTGGCAACTGTTCTTGTGTGTTGCTGTTGGTCTTTG GGCTGGACTTATAATCGGGTTTGTGACTGAGTACTATACCAGCAATGCATACAGCCCTGTTCAAGATGTTGCTGATTCTTGTCGAACTGGAGCAGCCACC AACGTTATTTTTGGGCTTGCATTAGGATACAAATCCGTTATCATCCCCATTTTTGCCATTGCAATTAGCATTTTTGTTAGTTTCAGTTTTGCCGCAATGT ACGGCATTGCAGTAGCTGCCCTTGGAATGTTGAGCACTATTGCGACTGGCTTAGCCATTGATGCATATGGTCCTATTAGTGACAATGCTGGAGGTATCGC TGAGATGGCAGGAATGAGCCACAGAATCCGTGAGAGAACTGATGCCCTTGATGCCGCTGGAAACACCACTGCTGCTATTGGCAAGGGTTTCGCTATTGGT TCGGCAGCCCTGGTATCATTGGCTCTGTTTGGTGCCTTTGTGAGCCGTGCATCTATTTCAACGGTTGATGTGTTGACCCCGAAAGTCTTCATTGGTTTGC TTGTTGGAGCTATGCTCCCTTACTGGTTCTCTGCAATGACGATGAAGAGCGTAGGAAGTGCAGCACTGAAGATGGTTGAGGAAGTTAGAAGGCAGTTCAA CACAATTCCTGGTCTTATGGAAGGTACTGCCAAGCCTGACTATGCCACCTGTGTGAAGATCTCGACTGACGCTTCCCTCAGAGAAATGATCCCACCTGGT GCACTTGTCATGCTCACTCCTCTCATTGTTGGCATCTTTTTTGGAGTGGAAACTCTCTCTGGTGTCCTTGCTGGATCACTTGTGTCTGGTGTGCAGATTG CTATCTCTGCATCAAACACTGGCGGCGCATGGGACAATGCCAAGAAGTACATCGAGGCTGGTGTGTCTGAGCACGCGAAATCACTTGGGCCGAAAGGGTC AGACCCACACAAGGCAGCAGTGATTGGTGACACCATTGGAGACCCATTGAAGGACACATCTGGACCATCACTGAACATCTTGATCAAGCTCATGGCGGTC GAGTCCCTTGTGTTTGCACCATTCTTTGCCACTCACGGTGGCTTGCTTTTCAAGATATGGTGA
AA sequence Show only first row Show all	>Lus10038114 pacid=23163638 polypeptide=Lus10038114 locus=Lus10038114.g ID=Lus10038114.BGIv1.0 annot-version=v1.0 MLGAVTSVVSGFLGMKIATYANARTTLEARKGVGKAFIIAFRSGAVMGFLLAASGLLVLYITILIFKLYYGDDWGGLFEAITGYGLGGSSMALFGRVGGG IYTKAADVGADLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSFGINHELTAMLFPLIISSIGILVCLITTLFAT DFFEIKAVKEIEPALKKQLVISTILMTIGIAIASWIALPSSFTIFNFGTQKEVSNWQLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAAT NVIFGLALGYKSVIIPIFAIAISIFVSFSFAAMYGIAVAALGMLSTIATGLAIDAYGPISDNAGGIAEMAGMSHRIRERTDALDAAGNTTAAIGKGFAIG SAALVSLALFGAFVSRASISTVDVLTPKVFIGLLVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTAKPDYATCVKISTDASLREMIPPG ALVMLTPLIVGIFFGVETLSGVLAGSLVSGVQIAISASNTGGAWDNAKKYIEAGVSEHAKSLGPKGSDPHKAAVIGDTIGDPLKDTSGPSLNILIKLMAV ESLVFAPFFATHGGLLFKIW

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15690		FUGU5, AtVHP1;1...	FUGU 5, ARABIDOPSIS THALIANA V...		Lus10038114 [exp]	0	1
AT1G15690		FUGU5, AtVHP1;1...	FUGU 5, ARABIDOPSIS THALIANA V...		Lus10038111 [exp]	1.0	0.9336
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Lus10003525 [exp]	2.0	0.9313
AT4G34450			coatomer gamma-2 subunit, puta...		Lus10040465 [exp]	6.9	0.9258
AT1G52360			Coatomer, beta' subunit (.1.2)		Lus10037524 [exp]	7.4	0.9172
AT1G62020			Coatomer, alpha subunit (.1)		Lus10011454 [exp]	9.2	0.9198
AT4G34450			coatomer gamma-2 subunit, puta...		Lus10023580 [exp]	9.2	0.9150
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Lus10002939 [exp]	9.5	0.8915
AT4G24780			Pectin lyase-like superfamily ...		Lus10013666 [exp]	10.0	0.8817
AT1G13860		QUL1	QUASIMODO2 LIKE 1 (.1.2.3.4)		Lus10036883 [exp]	10.7	0.9151
AT1G62020			Coatomer, alpha subunit (.1)		Lus10035883 [exp]	11.3	0.9128

Compare expression of checked genes

Lus10038114 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.