Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008052 [exp] 703 / 0 ND / Lus10001956 [exp] 148 / 4e-43 ND / Lus10001918 [exp] 102 / 2e-25 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G123400 [exp] 437 / 5e-153 ND / Potri.006G063600 [exp] 435 / 3e-152 ND / Potri.006G256900 [exp] 276 / 6e-90 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038116 pacid=23163803 polypeptide=Lus10038116 locus=Lus10038116.g ID=Lus10038116.BGIv1.0 annot-version=v1.0 ATGGCAGACCATCCCTCTGTCAAGCAAGACGTATCCCGTCTTCTCCAAGTGCTCGAAGCTCTGAAACACGCATCTCACTCCCTCCAATCCCACCCCACTC CTTCCTCTCCCGCCATTAAACCTCTCTTGGAGCTCCACACTGCCTCTCACGCTATCCTCTCCAACGACCCTAACCTCTCCTCCTTATCCCACTCCCTCGC CCAGCTTAACTCCTTCGTCGACACCTTCAACCGATCTCACGCTCACACCATCCCAAACTTCTTCTCTCGGGGTGCCTCCGCCCGCTCCATCTCCAAAGTT GCCGTCTCAATCGAGTCACAAATCCAGGCTTGGATCGACCGAGAAATCATCCACACCTTAGCCCAATCGCTGGAACAACTTAACCCCAAAGAACAACAAG AAGAAGAAGAATTGATAGCTCTATTTACTCAATTCGAGAACAGAGTCAATCTAGGGTTCAACCGCGACCTGCAGGATTTGGTTCTCAAGTCTAGAATCTT CGGATCGTTGCATCGGATCCTATGCGACCCGGCTCACTCTAACCTGATTCGGGAGCACTGCGCTTCCTCCATCGCCGCGTTAATCAGATTCAACAAGGAC GTCTTCGCCGGGTTTCTGACGCCGCCTGTGATCCAAGCGCTTGTCTCCATCGGCTCTTCGAAATCAATTCGCGTCTTGATCTCGTTGATCAAATCGATCA AGTCGCCGCTGGTCGACGAGATCGAATTCAACGGCGAAATCCCCAAAATCATCGGTTTGCTCGACGGGAAAGAGCAGGATGAGGAGACGAAGGTTTTGAC GGTGGACTGCTTGATGGAGATGGGATACTACGGGAGGAAAGAAGCAATCGACTCGATGGTGAAGCAAGGGTTAATAGAGAAGCTTGTGGAGCTGCAGCGG TCGGAATTAGGCGGAGATTTGATCGGTATGGAGAAATTCGACGACGACGAAGGCGGCGGCGGAGGAGAAAGGAAGAAGAAGAGGTGTAGGAAGGAGTTAG GTTATATTGAGAGGCATCCATTTGCGAGCTGCGTGGCGAGATTTGCGGTGCAGGTGGAGATCGGGGAAGGGCTGAGACAGAGGGAGAAGAGAGCGTTGAA GCCGGAGATACTCCGGTGCGTAAGGGAAGGTTGCGTCTCCGATGCGGAAGCTGCCACCATTGTAGCCGAGGTACTGTGGGGATCTACGCCGTGA
AA sequence Show only first row Show all	>Lus10038116 pacid=23163803 polypeptide=Lus10038116 locus=Lus10038116.g ID=Lus10038116.BGIv1.0 annot-version=v1.0 MADHPSVKQDVSRLLQVLEALKHASHSLQSHPTPSSPAIKPLLELHTASHAILSNDPNLSSLSHSLAQLNSFVDTFNRSHAHTIPNFFSRGASARSISKV AVSIESQIQAWIDREIIHTLAQSLEQLNPKEQQEEEELIALFTQFENRVNLGFNRDLQDLVLKSRIFGSLHRILCDPAHSNLIREHCASSIAALIRFNKD VFAGFLTPPVIQALVSIGSSKSIRVLISLIKSIKSPLVDEIEFNGEIPKIIGLLDGKEQDEETKVLTVDCLMEMGYYGRKEAIDSMVKQGLIEKLVELQR SELGGDLIGMEKFDDDEGGGGGERKKKRCRKELGYIERHPFASCVARFAVQVEIGEGLRQREKRALKPEILRCVREGCVSDAEAATIVAEVLWGSTP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10038116 [exp]	0	1
AT5G21090			Leucine-rich repeat (LRR) fami...		Lus10026751 [exp]	3.2	0.8421
AT3G02910			AIG2-like (avirulence induced ...		Lus10018276 [exp]	4.6	0.8013
AT5G43190			Galactose oxidase/kelch repeat...		Lus10010610 [exp]	5.4	0.7634
AT1G21380			Target of Myb protein 1 (.1)		Lus10028649 [exp]	11.0	0.7977
AT5G16370		AAE5	acyl activating enzyme 5 (.1)		Lus10039161 [exp]	12.0	0.7853
AT2G33700			Protein phosphatase 2C family ...		Lus10013213 [exp]	12.6	0.7966
AT3G11780			MD-2-related lipid recognition...		Lus10013366 [exp]	16.6	0.8174
AT3G23490		CYN	cyanase (.1)		Lus10018091 [exp]	17.0	0.7774
AT1G08830		CSD1	copper/zinc superoxide dismuta...		Lus10001719 [exp]	20.8	0.7877
AT4G25150			HAD superfamily, subfamily III...		Lus10013478 [exp]	22.1	0.7752

Compare expression of checked genes

Lus10038116 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.