Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05500 832 / 0 SYT5, NTMCTYPE2.1, ATSYTE ,NTMC2T2.1 ,NTMC2TYPE2.1 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT5G11100 803 / 0 SYT4, NTMCTYPE2.2, ATSYTD ,NTMC2T2.2 ,NTMC2TYPE2.2 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G61050 291 / 6e-92 AtCLB, NTMCTYPE4 ,NTMC2T4 ,NTMC2TYPE4 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT5G04220 233 / 3e-69 SYT3, NTMCTYPE1.3, ATSYTC ,NTMC2T1.3 ,NTMC2TYPE1.3 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT2G20990 215 / 1e-62 SYT1, NTMC2TYPE1.1, ATSYTA ,NTMC2T1.1 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) AT1G20080 213 / 1e-61 SYT2, NTMCTYPE1.2, ATSYTB ,NTMC2T1.2 ,NTMC2TYPE1.2 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G61030 161 / 5e-43 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G60950 157 / 6e-41 C2 calcium/lipid-binding endonuclease/exonuclease/phosphatase (.1) AT2G21010 80 / 1e-16 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G14590 77 / 2e-14 NTMCTYPE6.2 ,NTMC2T6.2 ,NTMC2TYPE6.2 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008055 [exp] 961 / 0 AT1G05500 775 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10006193 [exp] 778 / 0 AT5G11100 862 / 0.0 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10041034 [exp] 642 / 0 AT5G11100 710 / 0.0 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10039979 [exp] 395 / 2e-133 AT5G11100 379 / 2e-127 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10027709 [exp] 276 / 2e-88 AT1G05500 264 / 1e-84 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10041396 [exp] 273 / 4e-85 AT3G61050 676 / 0.0 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10036532 [exp] 271 / 8e-84 AT3G61050 672 / 0.0 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10026515 [exp] 232 / 1e-68 AT5G04220 615 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10037993 [exp] 230 / 3e-68 AT5G04220 701 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G124000 [exp] 899 / 0 AT1G05500 877 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.006G063900 [exp] 889 / 0 AT1G05500 847 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.018G025000 [exp] 783 / 0 AT5G11100 824 / 0.0 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.002G150700 [exp] 273 / 5e-85 AT3G61050 624 / 0.0 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.014G072800 [exp] 272 / 9e-85 AT3G61050 657 / 0.0 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.008G038300 [exp] 239 / 2e-71 AT5G04220 629 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.010G223900 [exp] 236 / 1e-70 AT5G04220 598 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.009G134200 [exp] 227 / 4e-67 AT2G20990 850 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) Potri.002G019800 [exp] 219 / 2e-64 AT1G20080 846 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.005G241700 [exp] 218 / 8e-64 AT1G20080 816 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain
Representative CDS sequence Show only first row Show all	>Lus10038117 pacid=23163793 polypeptide=Lus10038117 locus=Lus10038117.g ID=Lus10038117.BGIv1.0 annot-version=v1.0 ATGTCCTTCTTTTTTGGATTAGTCGTGGGGGTGATCGTTGGTCTTGCTCTAATTGTTGTCTTTGTACGATCTGAGAATGCACGATCCAAGCATCGTACTG AGCTCGCAACAACGATAGCTTCGTTTGCGAGGATGACAGTTGATGATTCCAGGAAGCTCTTGTCTCCAGAGTATTATCCTTCTTGGGTCGTCTTCTCCCA GCGCCAGAAGTTGAATTGGCTTAATTCTCATCTGATGAAGATCTGGCCTTATGTTAATGAGGCAGCGTCTGAGCTGATAAAGAGCTCAGTAGAGCCTACT CTTGAGCAATACAGACCCATAATTCTCTCATCTCTTAAGTTCTCCAAGTTCACTCTTGGAACCGTCGCCCCTCAGTTTACAGGAGTTTCCATTCTGGAGT CTGATAGCAATGGTGTAACCATGGAGTTGGAAATGAACTGGGACGGAAATCCGAACATTGTACTCGCTGTGAAAACCAGGCTCGGTGTCTCGCTGCCTGT GCAGGTGAAAGATATAGGTTTTACTGGGGTCTTCAGGTTGATTTTTAAGCCGCTGGTTGAAGAACTCCCTTGCTTTGGAGCTGTTTGTTATTCACTGAGA CAAAAGAAAAAATTTGACTTCAAACTTAAAGTAATTGGAGGTGACATTTCATCGATACCTGGGCTTTCTGGTGCTCTGGAGGAAACTATACACAATGCTA TCGAAGACTCTATTACCTGGCCTGTCCGTAAAATTGTCCCTATTTTGCCTGGAGATTACAGTGACTTGGAGTTGAAGCCATGTGGTATGCTGGAAGTGAA ACTTGTTCAAGCAAAGGACTTGACTAACAAGGACTTCATCGGGAAATCAGATCCCTATGCTGAATTGTACATTAGGCCTCTACGTGACAGAACAAAGGCT AGTAGAATCATTAGCAATGATCTCAATCCAATTTGGAATGAACACTATGAATTTGTTGTGGAGGATGCATCTACTCAGCACTTGTATGTTAAGATTTTTG ACGACGAGGGGCTGCAAGCTTCTGAACTACTTGGATGTGCTCAAGTTCCGTTGAGCCAGCTTGAACCTGGTAAAGTGAAGGATGTGTGGTTGAAGCTAGT TAAGGATTTGGAGATCCAAAGAGACAACAAAAACCGTGGGGAGGTGCACTTGGAGCTTCTCTACTGCCCTACCGGAATGGAGAATAGCTTCACAAATCCT TTCGCTAAGAAAGTTGAGATGACAAGCTTAGAAAGGGTGCTCAAAAGTTCAGGAAACGGGCTGGATGCTGCTGAAACTGAAAGGGAAGCCACACAAAAGA AAAGGGAGGTAATTGTTAGAGGAGTTTTATCTGTCACTGTGCTCTCTGCCGAAGACTTGCCTGTGGTTGATTTCATGGGCAAGGCTGATGCTTTCGTTGT CCTCACCATGAAAAAATCGGATACCAAAAACAAAACCAGGGTTGTGAACGATAGCTTAAATCCTGTATGGAACCAAACATTTGACTTTGTTGTGGAGGAT GCGCTACATGATATGCTAATGGTTGAAGTTTGGGATCACGACACATTTGGCAAGGAGTATATTGGGAGATGCATCTTAACATTGACTAGGGTCATCATGG AAGGAGAATACAGAGAATGCTTTCAGCTAGATCGTGCTAAATCTGGAAAACTTACTTTGAATCTCAAGTGGATGCCACAACCGATCTACCGCGATTCCGG AATGTAG
AA sequence Show only first row Show all	>Lus10038117 pacid=23163793 polypeptide=Lus10038117 locus=Lus10038117.g ID=Lus10038117.BGIv1.0 annot-version=v1.0 MSFFFGLVVGVIVGLALIVVFVRSENARSKHRTELATTIASFARMTVDDSRKLLSPEYYPSWVVFSQRQKLNWLNSHLMKIWPYVNEAASELIKSSVEPT LEQYRPIILSSLKFSKFTLGTVAPQFTGVSILESDSNGVTMELEMNWDGNPNIVLAVKTRLGVSLPVQVKDIGFTGVFRLIFKPLVEELPCFGAVCYSLR QKKKFDFKLKVIGGDISSIPGLSGALEETIHNAIEDSITWPVRKIVPILPGDYSDLELKPCGMLEVKLVQAKDLTNKDFIGKSDPYAELYIRPLRDRTKA SRIISNDLNPIWNEHYEFVVEDASTQHLYVKIFDDEGLQASELLGCAQVPLSQLEPGKVKDVWLKLVKDLEIQRDNKNRGEVHLELLYCPTGMENSFTNP FAKKVEMTSLERVLKSSGNGLDAAETEREATQKKREVIVRGVLSVTVLSAEDLPVVDFMGKADAFVVLTMKKSDTKNKTRVVNDSLNPVWNQTFDFVVED ALHDMLMVEVWDHDTFGKEYIGRCILTLTRVIMEGEYRECFQLDRAKSGKLTLNLKWMPQPIYRDSGM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05500		SYT5, NTMCTYPE2...	synaptotagmin 5, ARABIDOPSIS T...		Lus10038117 [exp]	0	1
AT5G35840		PHYC	phytochrome C (.1)		Lus10006389 [exp]	3.2	0.8110
AT5G35840		PHYC	phytochrome C (.1)		Lus10012342 [exp]	8.1	0.7497
AT1G51590		MNS1, MANIB	ALPHA-MANNOSIDASE IB, alpha-ma...		Lus10034820 [exp]	9.1	0.7965
AT3G26730			RING/U-box superfamily protein...		Lus10031993 [exp]	9.5	0.7505
AT2G38610			RNA-binding KH domain-containi...		Lus10035608 [exp]	9.9	0.7536
AT5G07240		IQD24	IQ-domain 24 (.1)		Lus10005760 [exp]	12.2	0.7093
AT5G19670			Exostosin family protein (.1)		Lus10012973 [exp]	12.8	0.7828
AT2G16920		UBC23 ,PFU2	PHO2 FAMILY UBIQUITIN CONJUGAT...		Lus10025070 [exp]	13.0	0.7842
AT5G25050			Major facilitator superfamily ...		Lus10026893 [exp]	15.0	0.7191
AT3G02130		TOAD2, RPK2, CL...	TOADSTOOL 2, clv3 peptide inse...		Lus10031976 [exp]	15.0	0.7356

Compare expression of checked genes

Lus10038117 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.