Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G33280 1049 / 0 Voltage-gated chloride channel family protein (.1) AT5G49890 806 / 0 ATCLC-C, CLC-C chloride channel C (.1) AT3G27170 744 / 0 ATCLC-B, CLC-B chloride channel B (.1) AT5G40890 731 / 0 ATCLCA, CLCA, ATCLC-A CHLORIDE CHANNEL-A, chloride channel A (.1.2) AT5G26240 510 / 2e-168 ATCLC-D, CLC-D chloride channel D (.1) AT4G14147 228 / 2e-69 ARPC4 protein binding (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007433 [exp] 851 / 0 AT5G49890 1190 / 0.0 chloride channel C (.1) Lus10024466 [exp] 847 / 0 AT5G49890 1189 / 0.0 chloride channel C (.1) Lus10012526 [exp] 736 / 0 AT3G27170 1264 / 0.0 chloride channel B (.1) Lus10002453 [exp] 513 / 1e-169 AT5G26240 1278 / 0.0 chloride channel D (.1) Lus10010531 [exp] 499 / 5e-164 AT5G26240 1242 / 0.0 chloride channel D (.1) Lus10041567 [exp] 230 / 2e-68 AT3G27170 456 / 1e-156 chloride channel B (.1) Lus10027499 [exp] 212 / 3e-58 AT4G14147 254 / 2e-81 protein binding (.1.2) Lus10041568 [exp] 129 / 7e-34 AT5G40890 273 / 1e-87 CHLORIDE CHANNEL-A, chloride channel A (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G124100 [exp] 1110 / 0 AT5G33280 1167 / 0.0 Voltage-gated chloride channel family protein (.1) Potri.006G064000 [exp] 1094 / 0 AT5G33280 1181 / 0.0 Voltage-gated chloride channel family protein (.1) Potri.003G001500 [exp] 843 / 0 AT5G49890 950 / 0.0 chloride channel C (.1) Potri.004G228300 [exp] 838 / 0 AT5G49890 983 / 0.0 chloride channel C (.1) Potri.T046200 [exp] 784 / 0 AT5G49890 947 / 0.0 chloride channel C (.1) Potri.018G138100 [exp] 769 / 0 AT5G49890 935 / 0.0 chloride channel C (.1) Potri.001G331700 [exp] 739 / 0 AT3G27170 1259 / 0.0 chloride channel B (.1) Potri.010G090100 [exp] 517 / 3e-171 AT5G26240 1149 / 0.0 chloride channel D (.1) Potri.017G057400 [exp] 224 / 5e-68 AT4G14147 318 / 4e-113 protein binding (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00571 [flax] [poplar] CBS CBS domain PF05856 [flax] [poplar] ARPC4 ARP2/3 complex 20 kDa subunit (ARPC4) PF00654 [flax] [poplar] Voltage_CLC Voltage gated chloride channel
Representative CDS sequence Show only first row Show all	>Lus10038118 pacid=23163708 polypeptide=Lus10038118 locus=Lus10038118.g ID=Lus10038118.BGIv1.0 annot-version=v1.0 ATGTCTTCAAATCCCACGAACGGACAAGCTCCGGATCCTGAATCAATATCATCTCCTTTATTGCTTCCTCAGCAGCAACGTTCCCTTTTTCAATCTACCT CTCAGGTCGCCTTAGTTGGCGCCAATGTCTGCCCGATTGAAAGCCTGGATTATGAGATTGCGGAGAACGATGTTTTCAAGCAGGACTGGAGGTCCAGAGG GAAGAAGCAGATGTTCCAGTACTTGTACATGAAGTGGTTGCTCTGTTTCCTTGTTGGAGTGATTGTTAGCCTTATCGGCTTCTTCAACAACCTTGCTGTT GAGAACATTGCTGGTTTGAAGTTCGTTGTCACTTCCAACATGATGCTTGCTCAAAGGCACCGCGTGGCATTTTCAGTGTTCTCAGCATCCAACTTGGTGC TTACCCTTTTTGCATCCGCCATCACCGCGTTTATAGCTCCTGCCGCTGCTGGTTCCGGTATACCGGAGATTAAGGCTTACCTTAACGGTGTTGATGCGCC TGGAATCTTGTCTGCACGTACTTTGTTTGTCAAGATTGTTGGAAGCATATCAGCTGTATCTGCATCTCTTCTAGTGGGAAAGGCAGGGCCAATGGTGCAC ACGGGGGCCTGTGTTGCATCCTTACTTACTCAGGGTGGCTCTAAGAAGTATGGATTGACTTGGAGAGGGTTTAGGTTATTCAAGAATGATCGTGACAGGC GAGATCTTGTGACTTGTGGATCGGCTGCTGGAATCACTGCTGCTTTTAGGGCTCCTGTTGGAGGTGTGTTGTTTGCTCTCGAGGAAATGGCATCCTGGTG GAGAAGTGCTCTCTTGTGGAGATGTTTCTTTGTGACCGCTGTGGTTGCTATAGTTCTCCGGGCTCTGATTGACTTCTGTTTGAGTGGGCGATGTGGATTG TTTGGAAAAGGAGGACTTATTGTGTTTGATGTTTATTCAGCAAACATCACTTACCATATCGTTGATGTCCCTTTTGTGCTTCTTCTTGGAGTCATAGGAG GCATCTTGGGAAGCTTATATAACTTAATGTTAGAGAAGGTTCTTCGAATATTCAACTTCATCCACGAGAAAGGTGCCGTTTACAAGATCCTACTCGCTTG CTTGATCTCAATCTTCACATCATGTCTTCTGTTTGGGGTACCTTGGCTTGGTTCATGCCAACCATGTCCACCTGGTGCATTAGAAGCCTGTCCTACCATA GGCCGGTCTGGTAATTACAAAAAGTTCCAATGTCCATCTGGTCACTACAATGATCTTGCCAGCCTCATCTTCAACACCAATGATGATGCCATCAAGAACC TCTTCAGCAGAAACACAGATACTGAGTTCCAACATTCCTCAGTTCTATTGTTCTTCATAATATGCTACTTGCTTAGCATCTTGAGCTACGGGGTTGTTCT CCCAGCTGGCCTCTTTGTGCCTGTTATCGTCACTGGTGCCTCTTATGGCCGGTTTGTGGGGATGTTGGTTGGTTCACACTCGACCCTGAACCATGGCCTC TATGCTGTTCTAGGTGCTGCTTCATTCCTCGGTGGATCGATGAGGATGACGGTATCGTTGTGTGTGATCCTGCTTGAACTCACCAATAATCTATTACTGC TGCCACTAACAATGCTGGTTCTCTTGATCTCCAAGACAGTTGCTGATACTTTCAATGGGAACATCTATGACCTTATCATGAAAGCAAAGGGTTTTCCTTA TCTCGAAGCTCATGCTGAACCGTACATGAGACAGCTGACAGTTGGCGATGTAGTCACTGGTCCTCTTCGGATGTTCCATGGAATTGAGATCGGGAACATA GTCCATGTTCTGAGAATCACCAGGCACAATGGGTTCCCAGTCATCGACGAGCCTCCAGAATCTGAATCCCAATCACAATCCCAAGTGCTTTACGGACTGA TCCTTCGTTCCCATCTCATCGAGTTGCTGAAAAAGAAAGAATCTTTCATGTCAACTCCAGTAGAGAGAGATGCATCGGAGGCATTGGCACATTTCTCAGC AGCCGAATTTGCCAAGAGAGGTTCAGGGAATGGGGAGAGCATAGACGATTTAGAGATAACGGAAGAAGAGATGGAGATGTACTTGGATTTGCACCCTTTT ACCAATGCTTCTCCATACACAGTTGTGGAGACGATGTCGCTCGCCAAGGCTCTACTTCTTTTCAGACAAGTTGGTCTCAGACATCTTTTGGTTATCCCCA AGATCACCAATAGATCACCTGTGATTGGAATATTAACAAGGCATGATTTCATGCCAGAACATATACTGGGATTGCATCCATTGCTGTTCAAGGGCAGGTG GAAGAGATTAAGGTTGCAGTTGCCCCAAAGATTATTAACTTTCTATTTGGTCTGCTTGCAGAATTTCCCTTGTCAAGAAGTTGAGAGGCACAACAAGCCA GAGGTTGAACTAAAGACAAGCTCGGAACTTCTCCTTAATCCTGTAAAGCAGGCGGATGAACTTGAAAACATACTGACGAAGAAGTTCCTGCGGTTCTTGT CGATAAGGGCAGAAGCATTTGACGTGCTTAGGCGAAAACCGATACAAGGTTATGATATTAGCTTTCTCATAACAAACTACAGTTGTGAGAATATGCAGAA GCACAAGCTCATAGATTTCATCGTGCAATTCATGGAGGATATTGACAAGGAGATAGGCGACCTTAAGATGTCGGTGAACACGAGAGGGAGGCTGGTGGCG ACCGAGTTTCTAAAGCAGTTCATTTGA
AA sequence Show only first row Show all	>Lus10038118 pacid=23163708 polypeptide=Lus10038118 locus=Lus10038118.g ID=Lus10038118.BGIv1.0 annot-version=v1.0 MSSNPTNGQAPDPESISSPLLLPQQQRSLFQSTSQVALVGANVCPIESLDYEIAENDVFKQDWRSRGKKQMFQYLYMKWLLCFLVGVIVSLIGFFNNLAV ENIAGLKFVVTSNMMLAQRHRVAFSVFSASNLVLTLFASAITAFIAPAAAGSGIPEIKAYLNGVDAPGILSARTLFVKIVGSISAVSASLLVGKAGPMVH TGACVASLLTQGGSKKYGLTWRGFRLFKNDRDRRDLVTCGSAAGITAAFRAPVGGVLFALEEMASWWRSALLWRCFFVTAVVAIVLRALIDFCLSGRCGL FGKGGLIVFDVYSANITYHIVDVPFVLLLGVIGGILGSLYNLMLEKVLRIFNFIHEKGAVYKILLACLISIFTSCLLFGVPWLGSCQPCPPGALEACPTI GRSGNYKKFQCPSGHYNDLASLIFNTNDDAIKNLFSRNTDTEFQHSSVLLFFIICYLLSILSYGVVLPAGLFVPVIVTGASYGRFVGMLVGSHSTLNHGL YAVLGAASFLGGSMRMTVSLCVILLELTNNLLLLPLTMLVLLISKTVADTFNGNIYDLIMKAKGFPYLEAHAEPYMRQLTVGDVVTGPLRMFHGIEIGNI VHVLRITRHNGFPVIDEPPESESQSQSQVLYGLILRSHLIELLKKKESFMSTPVERDASEALAHFSAAEFAKRGSGNGESIDDLEITEEEMEMYLDLHPF TNASPYTVVETMSLAKALLLFRQVGLRHLLVIPKITNRSPVIGILTRHDFMPEHILGLHPLLFKGRWKRLRLQLPQRLLTFYLVCLQNFPCQEVERHNKP EVELKTSSELLLNPVKQADELENILTKKFLRFLSIRAEAFDVLRRKPIQGYDISFLITNYSCENMQKHKLIDFIVQFMEDIDKEIGDLKMSVNTRGRLVA TEFLKQFI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G33280			Voltage-gated chloride channel...		Lus10038118 [exp]	0	1
AT3G58160		XI-16, MYA3, AT...	MYOSIN XI-16, MYOSIN A3, MYOSI...		Lus10033865 [exp]	14.2	0.7077
AT4G38650			Glycosyl hydrolase family 10 p...		Lus10025054 [exp]	18.9	0.6599
AT1G02850		BGLU11	beta glucosidase 11 (.1.2.3.4....		Lus10007871 [exp]	25.9	0.6738
AT3G54120			Reticulon family protein (.1)		Lus10027756 [exp]	26.9	0.6586
AT1G35510			O-fucosyltransferase family pr...		Lus10009450 [exp]	43.0	0.6654
AT1G75800			Pathogenesis-related thaumatin...		Lus10017265 [exp]	62.9	0.6524
AT2G34930			disease resistance family prot...		Lus10016344 [exp]	64.4	0.6716
AT1G65410		ABCI13, TGD3, A...	TRIGALACTOSYLDIACYLGLYCEROL 3,...		Lus10020188 [exp]	72.5	0.6604
AT5G55550			RNA-binding (RRM/RBD/RNP motif...		Lus10011728 [exp]	81.9	0.6396
AT1G17665			unknown protein		Lus10006153 [exp]	83.8	0.6326

Compare expression of checked genes

Lus10038118 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.