Plant FIBer expression Database

Lus10038120 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G20270 369 / 8e-128 HHP1 heptahelical transmembrane protein1 (.1)
AT2G24150 270 / 4e-89 HHP3 heptahelical protein 3 (.1)
AT4G37680 269 / 6e-88 HHP4 heptahelical protein 4 (.1.2)
AT4G30850 263 / 3e-86 HHP2 heptahelical transmembrane protein2 (.1.2)
AT4G38320 254 / 2e-82 HHP5 heptahelical protein 5 (.1)
AT2G40710 95 / 3e-24 Haemolysin-III related integral membrane protein (.1)
AT4G38290 82 / 2e-19 Haemolysin-III related integral membrane protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10008057
[exp]
607 / 0 AT5G20270 394 / 6e-137 heptahelical transmembrane protein1 (.1)
Lus10010605
[exp]
219 / 3e-68 AT4G37680 464 / 7e-164 heptahelical protein 4 (.1.2)
Lus10036605
[exp]
208 / 2e-64 AT4G30850 259 / 3e-84 heptahelical transmembrane protein2 (.1.2)
Lus10025206
[exp]
207 / 2e-63 AT4G37680 584 / 0.0 heptahelical protein 4 (.1.2)
Lus10011713
[exp]
203 / 5e-62 AT4G37680 585 / 0.0 heptahelical protein 4 (.1.2)
Lus10035823
[exp]
88 / 8e-19 AT4G30920 776 / 0.0 leucyl aminopeptidase 2, Cytosol aminopeptidase family protein (.1)
Lus10007709
[exp]
0 / 1 ND 47 / 2e-10
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G124754
[exp]
458 / 2e-162 AT5G20270 384 / 4e-133 heptahelical transmembrane protein1 (.1)
Potri.T124407
[exp]
456 / 1e-161 AT5G20270 385 / 2e-133 heptahelical transmembrane protein1 (.1)
Potri.006G064400
[exp]
440 / 1e-155 AT5G20270 369 / 2e-127 heptahelical transmembrane protein1 (.1)
Potri.018G102400
[exp]
292 / 4e-97 AT4G30850 374 / 5e-129 heptahelical transmembrane protein2 (.1.2)
Potri.014G006000
[exp]
255 / 3e-82 AT4G37680 632 / 0.0 heptahelical protein 4 (.1.2)
Potri.007G005800
[exp]
213 / 5e-66 AT4G37680 611 / 0.0 heptahelical protein 4 (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0192 GPCR_A PF03006 HlyIII Haemolysin-III related
Representative CDS sequence
>Lus10038120 pacid=23163644 polypeptide=Lus10038120 locus=Lus10038120.g ID=Lus10038120.BGIv1.0 annot-version=v1.0
ATGACTACAGGGCTAGCAATGAAGAGGATCGTAAGGCGTGCAAAGAAGAAGAGGAGGCAACAACAGCAGCAGGAATTAGAAGCCATGATGGACCATCAAT
CTCAAGAGGGTATTATTAATGCTATTCCTGCTGCTGCTGAGAGGGACAATGAGTTCATTTTGGGTTACTACAGAGCCGACTGGCCTCTCAAGGAAGCTCT
CTTCAGTGTTCTCCGATGGCATAACGAGACATTAAACGTTTGGTCGCATCTTATTGGCTTCTTGCTGTTTTTGGGGTTGACGATGGCCAATTTAGTGCAA
GTTCCTCAAGTAGCGGATCTATTCGGCTTTTTTACCAGGTCCGTCATTACCAGCACTCAAAGGAACGTCTCCCACGATTCAAAGTACCATTTACTGCACC
AAACCCACCTTGCAGAGCGGTGGCCGTTCTTTGTTTTCCTAGCCGGATCAATGTTCTGCCTCCTCTCCAGTACAATCTGCCACCTCTTCTCCTGCCACTC
GCACCGCCTGAACACAACCCTACTCCGAATCGACTACGTAGGAATCGCCGTCATGATAATCACCTCCTTCTTCCCAAACATCTACTACGTCTTCCAGTGC
GACCCGCATTGGCAAATCGCTTACCTTGCAGCCATCACCGCCATGGGAGTCTTCACAATTGCAACCCTGCTTACACCTTATCTCTCCACGGCCAAATTCC
GGGGGCTCCGAGCTCTCCTCTTTGTTTCCATGGGACTCTTCGGAATCGTGCCGGCGATACACGCCGGAGTCGTCAATTGGTCAAACCCTAAGCGCGACGT
CGTTTTGAAGTACGAAGGAGCCATGGCTCTGTTTTATTTGACGGGAACCGGGTTTTATGTGGCGCGGGTGCCGGAGCGATTTAAACCGGGCTGGTTCGAC
CTGGCGGGTCATAGCCACCAGATATTCCATGTGCTTGTGGTGCTGGGTGCGCTGGCGCATTATGGTTCCGCCCTTGTGTTCTTGGAGTATCGTGACCAAG
TCGGCTGCTAA
AA sequence
>Lus10038120 pacid=23163644 polypeptide=Lus10038120 locus=Lus10038120.g ID=Lus10038120.BGIv1.0 annot-version=v1.0
MTTGLAMKRIVRRAKKKRRQQQQQELEAMMDHQSQEGIINAIPAAAERDNEFILGYYRADWPLKEALFSVLRWHNETLNVWSHLIGFLLFLGLTMANLVQ
VPQVADLFGFFTRSVITSTQRNVSHDSKYHLLHQTHLAERWPFFVFLAGSMFCLLSSTICHLFSCHSHRLNTTLLRIDYVGIAVMIITSFFPNIYYVFQC
DPHWQIAYLAAITAMGVFTIATLLTPYLSTAKFRGLRALLFVSMGLFGIVPAIHAGVVNWSNPKRDVVLKYEGAMALFYLTGTGFYVARVPERFKPGWFD
LAGHSHQIFHVLVVLGALAHYGSALVFLEYRDQVGC

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G20270 HHP1 heptahelical transmembrane pro... Lus10038120
[exp]
0 1
AT1G67730 ATKCR1, YBR159,... beta-ketoacyl reductase 1 (.1) Lus10036940
[exp]
3.0 0.7879
AT5G20270 HHP1 heptahelical transmembrane pro... Lus10008057
[exp]
3.6 0.7620
Lus10018645
[exp]
15.5 0.7297
AT3G08680 Leucine-rich repeat protein ki... Lus10021383
[exp]
17.0 0.7946
AT5G23190 CYP86B1 "cytochrome P450, family 86, s... Lus10010193
[exp]
19.8 0.7824
AT1G50430 ST7R, PA, LE, 7... PARVA, LEPIDA, DWARF 5, DELTA5... Lus10034811
[exp]
22.0 0.7895
AT3G28470 MYB TDF1, ATMYB35 DEFECTIVE IN MERISTEM DEVELOPM... Lus10033119
[exp]
26.8 0.6851
AT2G39350 ABCG1 ATP-binding cassette G1, ABC-2... Lus10040341
[exp]
27.4 0.7777
AT2G41540 GPDHC1 6-phosphogluconate dehydrogena... Lus10035438
[exp]
28.5 0.7637
AT3G22600 Bifunctional inhibitor/lipid-t... Lus10021912
[exp]
29.4 0.6127

Lus10038120 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.