Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G11000 865 / 0 ATMAK10 MAK10 homologue (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005185 [exp] 1427 / 0 AT2G11000 889 / 0.0 MAK10 homologue (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G065000 [exp] 1116 / 0 AT2G11000 889 / 0.0 MAK10 homologue (.1.2) Potri.018G125171 [exp] 1079 / 0 AT2G11000 862 / 0.0 MAK10 homologue (.1.2) Potri.T124807 [exp] 1079 / 0 AT2G11000 863 / 0.0 MAK10 homologue (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04112 [flax] [poplar] Mak10 Mak10 subunit, NatC N(alpha)-terminal acetyltransferase
Representative CDS sequence Show only first row Show all	>Lus10038121 pacid=23163778 polypeptide=Lus10038121 locus=Lus10038121.g ID=Lus10038121.BGIv1.0 annot-version=v1.0 ATGGACTGGAACAGTACTACGGCGGAGCTTGGGGTGAACCGCTGCCCTACTCCGCCGCACACCTCTGCCGTTACCGCCAGTCCAAACACTGTTTGGGCCG ATGCCACCCCGCTCCTCCAGGCCGCTTGCACAGATCTTCAGGATGGGGAGCTTATTCATGGCAACAATTTTAATCTTTTTGCGGCAATGTCTGCTTTAGA GATAATGGACCCAAAGATGGATTCAGGTATGATATGCAAGTACTATTCTGTTGATGAGGCTATCGAAGATGGTGTTGCTCCAATTCCAATAAGCTTTGAT AGAGCGACAGATGTTCAATGTACAATTGATGTCATGGACCACCTTTTAGCTTGTGAGGCAACGTGGCACAAGGGCCACTCACTTGCTCAAACTGTTTTCT CATGTATCTACATGTTAAGGCCTGAGAGAACAGCGTCATCTCCAATATTGCATTCATATTGTAAAATCGTACGATCCACCTGCAAGGCTATTGTTTCAGT TGTCTCAGATGCCCGTACACATGAAGAAGAGGATCTTTTTACCATGGCTTATGGACTTCCCTTGAATGGGGATGGCGATGAAAAGAGCTTATCATTGCTA AATGCCGTTGAAGAGAACATTTGTCGCCAGCTGCGTGCTTGCAAGGCTCAATCATCTAGAAGAAAAGGTTTAGAAGATATGGAGCCTTTGCAATCTGATA TTGAGACAGAGGAGAGCTACTGTAAGGCATTGTTATCCCGCCTACGCTTTCGTAAGCATTTTTTTCACGTACTTGCGTGTATGAAGCGACCTCAAGGAAG AGGCCTGGAGCTGGCCAGGAAACATATAGCTTCATCCATATCAGAGTTGGAAATAATTCGCAAATCAGCTGACTTTCTATTAGCTACGGCTTCTGGGTCT TGTTCAAATGGTATAGAAGATAGAACAACTGCATCTGGGCGGCAAGCTATTGGTTTTGATGCTAGTTTGAACAGTAGAGTATCTGCTCCTGCTCCACCTC GCTCTATTAAAATGCTTAGTTGGAATAAGGCCATTGAGTATTTTGAAAAACTTCTTCGTGATCTAGATTTTATTTGTTCCTATTCATTGGATCCATCATT GGAAGTCGTGCTGCGCTTCGTGGCTCAGTTTCAGACTTGTCAGCCTGATCTTGTTGCAAGATCACATCTGCAGCTTTTGCTAGTTCAAGAGGGAAGACTT TATGGACGGGATCCTATGTTTGCTGTAATTACTAGAGCTGCAGGGTTGCCTGAGACCACAAAACATCACGATATTCAGAGGAATGAATCTGTTATACAAC TTGGCCAGTTACTCATCAACATGCTGAAAATTGTTTGTACAAATTCTGCATGGCAAAGGCGTAAACTAGGCAAGAGTTTGCAAGATTGGCGTGTAATCTA TGTACAGCTAGAGCTTTCTTTGAAAACTGAGTTTGGAGAAGTATCAACATCAAATGATGAGAACATTACCGAAAAGATTGTGAAGCACATCCTGATTTGG GTGGAGGAGCAAACATACTGGATAGCATGTCGATTTCTGATGCTGGGTTTTGAGTTGGAGCTTTATTCTCCTTGTGAACACTTCATGGTGTACTGGTACA TGTATGCTGCCTTGGTCAAGCTTGCTGAGAAAACACATTTTAGGATAGCGATGACCGAGGCCACTGCTAAACGAAAAGGGAAAAAACGGAAGGATTCCCC AAAAGATATTGGAAAGGAGACTCGGGTTCCACCAGCTGTGCTATTCCTTCAGTGTCAAATATGCCTTGCTGAAGGACTCACTCTGCTCCTAGCTGCTTTA CGGAATGAAATGGCAATCTTGCAAAGTCCAACCCCATTCAACTCTGAACAAGAGATATTCCTCCAGCATTTCGAGCTACTCCAGAAAGCTAGTGTTCCGG AACACATAACCTACCACTCATTCAAGGAATCCACATCATATGCTCGATTCTCGAACATAGCATTGCACAACTACTTCGAAGATGCTCAGAAGCTGGCGAA GGAGATCAAGAGCAGCTTCGTGAATGACCCAGAACGGTTAGCGGAGCTGAAAAGGTTAGAACAGGTAGCGGAGCACAATGGCGTGGCTGTGAATCTGATA TGCAAACTTGGAACGGTGGATCCTTCGTTGAAGGTGTCGTTTGAGTTCATACACCACCCTTGTATTGCGACTGCAGTAATTCGACGAGCTTGA
AA sequence Show only first row Show all	>Lus10038121 pacid=23163778 polypeptide=Lus10038121 locus=Lus10038121.g ID=Lus10038121.BGIv1.0 annot-version=v1.0 MDWNSTTAELGVNRCPTPPHTSAVTASPNTVWADATPLLQAACTDLQDGELIHGNNFNLFAAMSALEIMDPKMDSGMICKYYSVDEAIEDGVAPIPISFD RATDVQCTIDVMDHLLACEATWHKGHSLAQTVFSCIYMLRPERTASSPILHSYCKIVRSTCKAIVSVVSDARTHEEEDLFTMAYGLPLNGDGDEKSLSLL NAVEENICRQLRACKAQSSRRKGLEDMEPLQSDIETEESYCKALLSRLRFRKHFFHVLACMKRPQGRGLELARKHIASSISELEIIRKSADFLLATASGS CSNGIEDRTTASGRQAIGFDASLNSRVSAPAPPRSIKMLSWNKAIEYFEKLLRDLDFICSYSLDPSLEVVLRFVAQFQTCQPDLVARSHLQLLLVQEGRL YGRDPMFAVITRAAGLPETTKHHDIQRNESVIQLGQLLINMLKIVCTNSAWQRRKLGKSLQDWRVIYVQLELSLKTEFGEVSTSNDENITEKIVKHILIW VEEQTYWIACRFLMLGFELELYSPCEHFMVYWYMYAALVKLAEKTHFRIAMTEATAKRKGKKRKDSPKDIGKETRVPPAVLFLQCQICLAEGLTLLLAAL RNEMAILQSPTPFNSEQEIFLQHFELLQKASVPEHITYHSFKESTSYARFSNIALHNYFEDAQKLAKEIKSSFVNDPERLAELKRLEQVAEHNGVAVNLI CKLGTVDPSLKVSFEFIHHPCIATAVIRRA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G11000		ATMAK10	MAK10 homologue (.1.2)		Lus10038121 [exp]	0	1
AT2G29200		APUM1	pumilio 1 (.1)		Lus10004976 [exp]	1.4	0.8969
AT1G09020		ATSNF4, SNF4	homolog of yeast sucrose nonfe...		Lus10031501 [exp]	2.4	0.8646
AT2G36070		ATTIM44-2	translocase inner membrane sub...		Lus10022930 [exp]	2.8	0.8827
AT3G09850			D111/G-patch domain-containing...		Lus10019584 [exp]	3.0	0.8783
AT2G21470		EMB2764, ATSAE2...	EMBRYO DEFECTIVE 2764, SUMO-ac...		Lus10028804 [exp]	4.5	0.8679
AT3G10550		MTM1, AtMTM1	Arabidopsis thaliana myotubula...		Lus10037915 [exp]	4.6	0.8639
AT5G19280	FHA	RAG1, KAPP	ROOT ATTENUATED GROWTH 1, kina...		Lus10034062 [exp]	5.1	0.8369
AT5G24670		TAD3, EMB2820	tRNA adenosine deaminase 3, EM...		Lus10016480 [exp]	6.2	0.8270
AT1G30620		MURUS4, HSR8, U...	UDP-D-XYLOSE 4-EPIMERASE 1, MU...		Lus10003496 [exp]	7.4	0.8520
AT2G34260		WDR55	human WDR55 \(WD40 repeat\) ho...		Lus10034796 [exp]	11.3	0.8607

Compare expression of checked genes

Lus10038121 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.