Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35200 621 / 0 ENTH/ANTH/VHS superfamily protein (.1) AT2G01600 403 / 2e-134 ENTH/ANTH/VHS superfamily protein (.1) AT5G57200 400 / 3e-133 ENTH/ANTH/VHS superfamily protein (.1) AT1G14910 400 / 8e-132 ENTH/ANTH/VHS superfamily protein (.1) AT4G25940 392 / 1e-129 ENTH/ANTH/VHS superfamily protein (.1) AT1G03050 209 / 5e-60 ENTH/ANTH/VHS superfamily protein (.1) AT4G02650 194 / 3e-54 ENTH/ANTH/VHS superfamily protein (.1) AT1G05020 193 / 8e-54 ENTH/ANTH/VHS superfamily protein (.1) AT4G32285 192 / 2e-53 ENTH/ANTH/VHS superfamily protein (.1.2) AT2G25430 149 / 2e-38 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005184 [exp] 911 / 0 AT5G35200 702 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10013469 [exp] 427 / 9e-144 AT2G01600 758 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10034610 [exp] 422 / 6e-142 AT2G01600 765 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10007933 [exp] 428 / 6e-141 AT2G01600 758 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10021796 [exp] 419 / 2e-140 AT2G01600 756 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10025462 [exp] 404 / 2e-134 AT4G25940 685 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10003642 [exp] 352 / 2e-115 AT5G35200 380 / 2e-126 ENTH/ANTH/VHS superfamily protein (.1) Lus10015335 [exp] 239 / 1e-70 AT4G25940 385 / 6e-126 ENTH/ANTH/VHS superfamily protein (.1) Lus10019402 [exp] 191 / 2e-53 AT2G25430 580 / 0.0 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G125284 [exp] 723 / 0 AT5G35200 646 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.T125107 [exp] 717 / 0 AT5G35200 644 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.006G065100 [exp] 703 / 0 AT5G35200 621 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.008G132100 [exp] 429 / 1e-144 AT2G01600 749 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.010G110000 [exp] 425 / 3e-143 AT2G01600 732 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.018G142800 [exp] 406 / 1e-135 AT5G57200 655 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.006G075800 [exp] 404 / 5e-135 AT2G01600 543 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.T124907 [exp] 350 / 8e-119 AT5G35200 357 / 4e-122 ENTH/ANTH/VHS superfamily protein (.1) Potri.006G118100 [exp] 220 / 2e-64 AT1G03050 605 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.002G224500 [exp] 209 / 8e-60 AT1G05020 500 / 2e-170 ENTH/ANTH/VHS superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0009 [flax] [poplar] ENTH_VHS PF07651 [flax] [poplar] ANTH ANTH domain
Representative CDS sequence Show only first row Show all	>Lus10038122 pacid=23163664 polypeptide=Lus10038122 locus=Lus10038122.g ID=Lus10038122.BGIv1.0 annot-version=v1.0 ATGTCAGGAGGTGGAACGCAGAAGAGTTTGAGGAAGGCACTTGGGTCAATCAAGGACACCACCACTGTTTCATTGGCCAAAATTAATAGTGATTACAAGG AATTGGACGTTGCAATAGTTAAGGCTACAAATCATGTTGAAAGACCGGCAAAAGAGAAACATATAAGAGCCGTTTTTGCTGCTATTTCAGCTACCAGGCC TCGTGCTGATGTTGCATATTGCATCCATGCTCTTGCCAGAAGGTTATCCAAGACGCATAATTGGGCGGTGGCCTTGAAAACTTTGCTTATCATCCATCGA GCTTTGAGGGAAGTTGACCCTACGTTCCATGAGGAACTGATCAACTATGGCAGAAGCAGAAGCCATATGCTAAATATGTCTCATTTTAAAGACGATTCCA GCCCAAATGCATGGGATTATTCTGCTTGGGTTCGCACTTATGCCTTGTTTTTGGAGGAGAGGATGGAATGTTTTCGAGTTCTGAAATGTGACATTGAGGC AGATCGACCTAGGACCAAAGATTTGGAAACCGCCGAATTGCTGGACCAACTGCCAGCCTTGCAACAACTCCTTTCCCGCGTTCTCAACTGTCAGCCACAA GGTGCTGCTGTCAGTAACTTTATCATTCGATTGGCACTTTCAATGGTTGCTTCAGAAAGTGTGAAGATCTATCAAGCTATTACTGATGGAACAGCAAATT TAGTGGATAAGTTCTTTGAGATGCCACGCCCTGAAGCTGTGAAGGCTCTAGAAATCTATAGGAGAGCCTGTCAGCAGGCAGAGAGACTCTCGGAATTTTA CGAGATATGCAAAAGTGTGGACATAGGTCGTGGAGAAAGGTTCATCAAAATTGAACAGCCTCCTGCATCTTTCTTACAAACCATGGAAGAGTATGTGCGA GATGCTCCACGTATGTCTATTGCTAATAAAGATCAGGTTGTGGGCAACAAGATTGCTGCACCAAAGGAAATCTTAGCCATAGAGTACAAGCAAGAACCAG AGGTGGTGAAGGAAGTGGAAGAACACCCTCCATCACCTACTAAACCTGAACCGGTCATCAGAGAAGAGAAGCCTCCCGTTGTAGCACCACCTGATTTGTT GAACTTGGATGATCCAGCCACCATTGCTTCTTCAGAACTTGATGAGAAAAATTCCCTTGCCTTGGCTATTGTCCCAGTTGGTGACCAACCAACTGCTACG GTGCCAAGTCAAGCGAATGGAACAGGTTGGGAACTGGCACTCGTTACAGCTCCAAGTTCAAATGAAACTGCAACTGCTTCCAGTAAACTGGGGGGAGGGC TAGATAAGCTTACACTGGACAGCTTATATGATGATGCAATCAGAATGAAAAGTCAGCCCACAAGCTACAATCCTTGGGAGGCCGGTCAGATAAACGGTTC GATGATGCAAGGCGCCCAACTCGATCCTTTCTTCGCCTCCAATGGAGTTGCTGCACCACACAATGTGCAAATGGCAAGTATGGTGAATCAGCAGCAGCAG CAGGCTTTCATGTGGCAACAGCAGCAACAGCAGATGATGATGATGGCCGCCCCACAATTCCAACAGCAAGCCAACCCTTTTGCAGCAAATACATATGGAA CCGGGGTTCAGTATGGCACAGGTATGGCGCCGGTTCAAGCGTACAATCCGTATCCAGGATACCACTAA
AA sequence Show only first row Show all	>Lus10038122 pacid=23163664 polypeptide=Lus10038122 locus=Lus10038122.g ID=Lus10038122.BGIv1.0 annot-version=v1.0 MSGGGTQKSLRKALGSIKDTTTVSLAKINSDYKELDVAIVKATNHVERPAKEKHIRAVFAAISATRPRADVAYCIHALARRLSKTHNWAVALKTLLIIHR ALREVDPTFHEELINYGRSRSHMLNMSHFKDDSSPNAWDYSAWVRTYALFLEERMECFRVLKCDIEADRPRTKDLETAELLDQLPALQQLLSRVLNCQPQ GAAVSNFIIRLALSMVASESVKIYQAITDGTANLVDKFFEMPRPEAVKALEIYRRACQQAERLSEFYEICKSVDIGRGERFIKIEQPPASFLQTMEEYVR DAPRMSIANKDQVVGNKIAAPKEILAIEYKQEPEVVKEVEEHPPSPTKPEPVIREEKPPVVAPPDLLNLDDPATIASSELDEKNSLALAIVPVGDQPTAT VPSQANGTGWELALVTAPSSNETATASSKLGGGLDKLTLDSLYDDAIRMKSQPTSYNPWEAGQINGSMMQGAQLDPFFASNGVAAPHNVQMASMVNQQQQ QAFMWQQQQQQMMMMAAPQFQQQANPFAANTYGTGVQYGTGMAPVQAYNPYPGYH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G35200			ENTH/ANTH/VHS superfamily prot...		Lus10038122 [exp]	0	1
AT5G53330			Ubiquitin-associated/translati...		Lus10038829 [exp]	1.0	0.9429
AT4G32760			ENTH/VHS/GAT family protein (....		Lus10022140 [exp]	2.0	0.9232
AT5G23450		ATLCBK1	long-chain base (LCB) kinase 1...		Lus10017366 [exp]	2.4	0.9215
AT1G61240			Protein of unknown function (D...		Lus10006728 [exp]	5.2	0.8965
AT4G36945			PLC-like phosphodiesterases su...		Lus10000092 [exp]	5.9	0.9210
AT2G05940		RIPK	RPM1-induced protein kinase, P...		Lus10027638 [exp]	6.2	0.9282
AT1G25280	TUB	AtTLP10	tubby like protein 10 (.1.2.3)		Lus10034106 [exp]	7.3	0.8820
AT2G05755			Nodulin MtN21 /EamA-like trans...		Lus10030012 [exp]	13.7	0.8522
AT4G08180		ORP1C	OSBP(oxysterol binding protein...		Lus10025635 [exp]	14.8	0.8675
AT4G36480		FBR11, EMB2779,...	FUMONISIN B1 RESISTANT 11, EMB...		Lus10005205 [exp]	16.2	0.8731

Compare expression of checked genes

Lus10038122 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.