Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19110 552 / 0 Protein kinase superfamily protein (.1.2.3) AT5G45430 520 / 0 Protein kinase superfamily protein (.1.2) AT4G13020 370 / 1e-124 MHK Protein kinase superfamily protein (.1.2.3.4.5) AT3G48750 213 / 6e-65 CDKA1, CDC2A, CDKA;1, CDC2AAT, CDK2 cell division control 2 (.1) AT1G66750 207 / 3e-62 CDKD1;2, CAK4AT, AT;CDKD;2, CDKD;2 CYCLIN-DEPENDENT KINASE D1;2, CDK-activating kinase 4 (.1) AT1G59580 205 / 6e-61 ATMPK2 mitogen-activated protein kinase homolog 2 (.1.2) AT1G18040 202 / 7e-60 CDKD1;3, AT;CDCKD;3, CAK2AT cyclin-dependent kinase D1;3 (.1) AT1G10210 201 / 3e-59 ATMPK1 mitogen-activated protein kinase 1 (.1.2) AT1G73690 199 / 2e-58 CDKD1;1, AT;CDKD;1, CAK3AT cyclin-dependent kinase D1;1 (.1) AT4G11330 198 / 3e-58 ATMPK5 MAP kinase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033278 [exp] 584 / 0 AT4G19110 620 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10008303 [exp] 582 / 0 AT4G19110 616 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10003155 [exp] 370 / 4e-124 AT4G13020 629 / 0.0 Protein kinase superfamily protein (.1.2.3.4.5) Lus10005183 [exp] 204 / 1e-63 AT4G19110 183 / 8e-57 Protein kinase superfamily protein (.1.2.3) Lus10025986 [exp] 206 / 2e-61 AT2G18170 617 / 0.0 MAP kinase 7 (.1) Lus10010637 [exp] 205 / 8e-61 AT1G59580 657 / 0.0 mitogen-activated protein kinase homolog 2 (.1.2) Lus10033197 [exp] 204 / 1e-60 AT1G10210 660 / 0.0 mitogen-activated protein kinase 1 (.1.2) Lus10014283 [exp] 199 / 1e-58 AT2G18170 611 / 0.0 MAP kinase 7 (.1) Lus10007921 [exp] 199 / 1e-58 AT4G01370 689 / 0.0 MAP kinase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G101600 [exp] 597 / 0 AT4G19110 689 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.003G190200 [exp] 471 / 1e-163 AT4G19110 508 / 5e-179 Protein kinase superfamily protein (.1.2.3) Potri.016G012801 [exp] 447 / 2e-155 AT4G19110 452 / 3e-158 Protein kinase superfamily protein (.1.2.3) Potri.010G154400 [exp] 445 / 2e-154 AT4G19110 451 / 4e-158 Protein kinase superfamily protein (.1.2.3) Potri.002G247500 [exp] 373 / 5e-125 AT4G13020 629 / 0.0 Protein kinase superfamily protein (.1.2.3.4.5) Potri.001G035400 [exp] 306 / 4e-102 AT4G19110 306 / 9e-104 Protein kinase superfamily protein (.1.2.3) Potri.004G133500 [exp] 216 / 3e-66 AT3G48750 540 / 0.0 cell division control 2 (.1) Potri.005G231100 [exp] 203 / 4e-60 AT1G59580 617 / 0.0 mitogen-activated protein kinase homolog 2 (.1.2) Potri.002G032100 [exp] 202 / 5e-60 AT1G59580 624 / 0.0 mitogen-activated protein kinase homolog 2 (.1.2) Potri.005G119500 [exp] 200 / 3e-59 AT2G18170 662 / 0.0 MAP kinase 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10038123 pacid=23163924 polypeptide=Lus10038123 locus=Lus10038123.g ID=Lus10038123.BGIv1.0 annot-version=v1.0 ATGTTAGAAGTGGACTTGCCAACATGTTTGGCTGGGAAGACGAACAATCTGATCCGAGTGGGAGATGGGAATATGCACTTGTACTCGTCGATCATGATGG AAACCTCGTCGTTACTCGTTAGAGAGAGTCAAGGTCGTGTTGTGGTACTTGAGGTTGAACGGTGTCAAGAGGTAGAGAGCGGCGAGGAAATTGAGTGTGA GATTGGCGGTGAAGGTACTGACGGTGTAAAAGAGGGATTTGATCTGCGGGCGGAATACACGTTAATTCAAGAAGTCGGTGATGGAGCATTTGGGACCGTC TGTCGAGCAATAAACAAGCAGACGGGTGAAGTTGTTGCTATTAAGAAGATGAAGAAAAATTATTATTCGTGGGAAGATTGCATTAATTTGAGGGAAGTGA AGTCCTTGCGGAAGATGAATCATCCCAATATTGTGAAGCTCAAGGAAGTAATCCGAGAACACGATGTCTTGTATTTTGTCTTCGAGTATATGGAATGCAA CTTGTACCATCTGATCAAAGATAGGTCTAAGCTATTCTCAGAAGCTGAAATCAGAGATTGGTGTTTCCAAATATTTCAAGGTCTAGCTTATATGCATCAG CATGGCTACTTTCATCGTGATCTAAAGCCTGAGAACTTCTTGGTTACAAGAGGAACAGTAAAAATTGCTGATTTGGGTCTTGCTCGAGAAATCGATTCTC AACCACCATATACAGAATATGTATCAACACGGTGGTATCGAGCCCCCGAAGTGCTACTTCAGTCGTACCTTTATAGCTCTAAAGTTGATATATGGGCAAT GGGTGCCATAATGGCTGAATTATTTACCCTCAGGCCTCTTTTCCCCGGTACCAGCGAAGCAGATGAGATCTACAAGATATGCAGCGTATTAGGGAGTCCA ACAGTGCACTCTTGGACGCATGGTTTGGAACTTGCGATGGATATAAATTATCAATTCCCGCTGTTCCCGGGCGTGCACCTCTCTCTCCTGATACCATCAG CAAGTGATGATGCGATTAATCTTATTACATCTCTCTGTATGTGGGATCCCAGCAAGAGGCCAACAGCTGCAGAGGCACTTCAGCATCCTTTCTTCCAAAA TTGCTTTTATATTCCACCATCGCTACGTTCAAGACCAACTCTTACTAGGACGGCCCTGGCTGCTGAAATTAAGGCGTCATTGGAGAAACGTGATGATAGA AGATCTGCTTTGGCTTTGCCTAATGTGAAGCTTAACAACTTCACTTCCCCAAAGTTGGAAGTGCCTCCTCTGAGCACAGATGTCCAGTGCAAACGTGATA TGGATAAGAAGGTCTCTGTTAGGCAGTCAAGATACTGTCCACCAGGAAGGAAAAGCACAGGCGGTGAGAGTTCAGCTCTTGATCTGAGGTTTGGAAGTAT GAGCATTGGCACACAAAGGCAGTCAGTGGGAAAGAATACTACTACTAGTAGTAGTACTAGTACAAGGAACAACCTGAGGAATGGTGCAGCAGCGTGGGGT GCTGAGACTGACAAGTTTATGACGACGACGACAAGGCCAACTCAACAATTCCAAGCAGCGCCCAGAAGCTACGCTAGGAAAATCATGGCTTGA
AA sequence Show only first row Show all	>Lus10038123 pacid=23163924 polypeptide=Lus10038123 locus=Lus10038123.g ID=Lus10038123.BGIv1.0 annot-version=v1.0 MLEVDLPTCLAGKTNNLIRVGDGNMHLYSSIMMETSSLLVRESQGRVVVLEVERCQEVESGEEIECEIGGEGTDGVKEGFDLRAEYTLIQEVGDGAFGTV CRAINKQTGEVVAIKKMKKNYYSWEDCINLREVKSLRKMNHPNIVKLKEVIREHDVLYFVFEYMECNLYHLIKDRSKLFSEAEIRDWCFQIFQGLAYMHQ HGYFHRDLKPENFLVTRGTVKIADLGLAREIDSQPPYTEYVSTRWYRAPEVLLQSYLYSSKVDIWAMGAIMAELFTLRPLFPGTSEADEIYKICSVLGSP TVHSWTHGLELAMDINYQFPLFPGVHLSLLIPSASDDAINLITSLCMWDPSKRPTAAEALQHPFFQNCFYIPPSLRSRPTLTRTALAAEIKASLEKRDDR RSALALPNVKLNNFTSPKLEVPPLSTDVQCKRDMDKKVSVRQSRYCPPGRKSTGGESSALDLRFGSMSIGTQRQSVGKNTTTSSSTSTRNNLRNGAAAWG AETDKFMTTTTRPTQQFQAAPRSYARKIMA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19110			Protein kinase superfamily pro...		Lus10038123 [exp]	0	1
AT3G01650		RGLG1	RING domain ligase1 (.1)		Lus10022294 [exp]	3.0	0.8607
AT2G17760			Eukaryotic aspartyl protease f...		Lus10028411 [exp]	7.0	0.8617
AT3G15760			unknown protein		Lus10043269 [exp]	8.7	0.8421
AT5G04250			Cysteine proteinases superfami...		Lus10037977 [exp]	18.7	0.8669
AT4G12010			Disease resistance protein (TI...		Lus10012246 [exp]	23.1	0.8496
AT4G02920			unknown protein		Lus10027996 [exp]	25.9	0.8244
AT3G56360			unknown protein		Lus10034235 [exp]	28.2	0.8315
AT1G71830		ATSERK1, SERK1	somatic embryogenesis receptor...		Lus10028715 [exp]	32.1	0.8478
AT5G06740			Concanavalin A-like lectin pro...		Lus10009423 [exp]	34.1	0.7821
AT4G01370		ATMPK4	MAP kinase 4 (.1)		Lus10028765 [exp]	34.2	0.7818

Compare expression of checked genes

Lus10038123 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.