Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54600 244 / 2e-82 Translation protein SH3-like family protein (.1.2) AT5G23535 71 / 3e-15 KOW domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005180 [exp] 355 / 1e-125 AT5G54600 246 / 3e-83 Translation protein SH3-like family protein (.1.2) Lus10006905 [exp] 71 / 4e-15 AT5G23535 280 / 3e-98 KOW domain-containing protein (.1) Lus10042614 [exp] 70 / 9e-15 AT5G23535 286 / 6e-101 KOW domain-containing protein (.1) Lus10022069 [exp] 70 / 9e-15 AT5G23535 284 / 5e-100 KOW domain-containing protein (.1) Lus10014683 [exp] 49 / 8e-07 AT2G48140 145 / 6e-43 embryo sac development arrest 4, Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G415400 [exp] 271 / 4e-93 AT5G54600 243 / 2e-82 Translation protein SH3-like family protein (.1.2) Potri.004G062600 [exp] 69 / 3e-14 AT5G23535 254 / 6e-88 KOW domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0107 [flax] [poplar] KOW PF00467 [flax] [poplar] KOW KOW motif
Representative CDS sequence Show only first row Show all	>Lus10038125 pacid=23163741 polypeptide=Lus10038125 locus=Lus10038125.g ID=Lus10038125.BGIv1.0 annot-version=v1.0 ATGGCTTCGCTTTCTATTTCCCCAAGCTCCTTCTTCGGAGACCGCCTTTCGGTTCTTTCTATCTCTCCTTTCACGGTCAAGTTACCAAACAAGCCATGTC TCATTGTTGCAAAGTTAAAGCGATGGGAACGGAAGGAATGCAAACCAAACAGCCTTCCCGTTTTACATAAAATGCACGTAAAGGTGGGTGATACAGTGAA ACTGATCACTGGAGACGATAAAGGAAAAGTTGGAGAAATTACAAAGATTTTCAGGCACAACAGCACCGTGATCGTCAAGGATATCAACTTAAAAACTAAG CATATGAAGAGCAAAGAGCAGGATGAACCTGGCCAAATCATTAAGATAGAGGCACCCGTTCATAGTTCAAACGTAATGGTGTACTCAAAAGAGAAGAATA TAGCAAGCAGGGTGGGTCATAAAGTCCTGGAAGATGGATCCCGAGTGCGGTACCTGATCAAAACGGGTGAGGTAATTGACAGTGCAGAGAACTGGAAGAA ACTGAAGGAAGAGAGCCAGACAGTCGAGAAAACTGAAACCGGCTGCGGTGGGTGGGATGAAATGACCCTCAGGGCAATTCAATGTCTGAGCTTTTCTTGT TGGGTGCTCAAAGACAACCCAGATGGAGCAGAGACCAAGCTCGAATCTCTGGAAGTTTTGACGATTGCTGCTCCGCAATTCGAATGTTTGCCTTCGACAT GTCTATCGTGA
AA sequence Show only first row Show all	>Lus10038125 pacid=23163741 polypeptide=Lus10038125 locus=Lus10038125.g ID=Lus10038125.BGIv1.0 annot-version=v1.0 MASLSISPSSFFGDRLSVLSISPFTVKLPNKPCLIVAKLKRWERKECKPNSLPVLHKMHVKVGDTVKLITGDDKGKVGEITKIFRHNSTVIVKDINLKTK HMKSKEQDEPGQIIKIEAPVHSSNVMVYSKEKNIASRVGHKVLEDGSRVRYLIKTGEVIDSAENWKKLKEESQTVEKTETGCGGWDEMTLRAIQCLSFSC WVLKDNPDGAETKLESLEVLTIAAPQFECLPSTCLS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54600			Translation protein SH3-like f...		Lus10038125 [exp]	0	1
AT1G78630		EMB1473	embryo defective 1473, Ribosom...		Lus10005553 [exp]	1.7	0.9848
AT5G66470			RNA binding;GTP binding (.1)		Lus10014289 [exp]	2.0	0.9794
AT3G13120			Ribosomal protein S10p/S20e fa...		Lus10016604 [exp]	3.5	0.9768
AT4G38160		PDE191	pigment defective 191, Mitocho...		Lus10026571 [exp]	4.6	0.9656
AT1G71720		PDE338	PIGMENT DEFECTIVE 338, Nucleic...		Lus10028698 [exp]	4.8	0.9575
AT3G60370			FKBP-like peptidyl-prolyl cis-...		Lus10042897 [exp]	5.9	0.9721
AT1G78630		EMB1473	embryo defective 1473, Ribosom...		Lus10041940 [exp]	6.6	0.9729
AT3G13120			Ribosomal protein S10p/S20e fa...		Lus10007111 [exp]	7.7	0.9616
AT3G44890		RP19, RPL9	ribosomal protein L9 (.1)		Lus10041346 [exp]	8.5	0.9699
AT1G04940		AtTic20-I, atTI...	translocon at the inner envelo...		Lus10033195 [exp]	8.7	0.9299

Compare expression of checked genes

Lus10038125 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.