Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19250 712 / 0 FMO1 flavin-dependent monooxygenase 1 (.1) AT5G45180 572 / 0 Flavin-binding monooxygenase family protein (.1) AT1G21430 81 / 2e-16 YUC11 Flavin-binding monooxygenase family protein (.1) AT4G28720 81 / 4e-16 YUC8 YUCCA 8, Flavin-binding monooxygenase family protein (.1) AT2G33230 80 / 6e-16 YUC7 YUCCA 7 (.1) AT5G61290 79 / 2e-15 Flavin-binding monooxygenase family protein (.1) AT5G07800 79 / 2e-15 Flavin-binding monooxygenase family protein (.1) AT1G04180 77 / 5e-15 YUC9 YUCCA 9 (.1) AT1G65860 75 / 5e-14 FMOGS-OX1 ,FMO GS-OX1 flavin-monooxygenase glucosinolate S-oxygenase 1 (.1) AT5G43890 73 / 1e-13 YUCCA5, SUPER1, YUC5 YUCCA5, SUPPRESSOR OF ER 1, Flavin-binding monooxygenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005178 [exp] 1001 / 0 AT1G19250 744 / 0.0 flavin-dependent monooxygenase 1 (.1) Lus10020001 [exp] 800 / 0 AT1G19250 709 / 0.0 flavin-dependent monooxygenase 1 (.1) Lus10023940 [exp] 398 / 1e-133 AT1G19250 399 / 3e-134 flavin-dependent monooxygenase 1 (.1) Lus10013230 [exp] 328 / 1e-106 AT1G19250 341 / 2e-111 flavin-dependent monooxygenase 1 (.1) Lus10023941 [exp] 242 / 1e-75 AT1G19250 241 / 2e-75 flavin-dependent monooxygenase 1 (.1) Lus10014439 [exp] 216 / 2e-64 AT1G19250 209 / 1e-61 flavin-dependent monooxygenase 1 (.1) Lus10023942 [exp] 205 / 3e-61 AT5G45180 215 / 4e-65 Flavin-binding monooxygenase family protein (.1) Lus10015529 [exp] 191 / 2e-55 AT4G30270 346 / 6e-119 SENESCENCE 4, meristem-5, MERISTEM 5, xyloglucan endotransglucosylase/hydrolase 24 (.1) Lus10030750 [exp] 108 / 2e-26 AT1G19250 148 / 5e-41 flavin-dependent monooxygenase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G137600 [exp] 777 / 0 AT1G19250 699 / 0.0 flavin-dependent monooxygenase 1 (.1) Potri.001G335900 [exp] 694 / 0 AT1G19250 630 / 0.0 flavin-dependent monooxygenase 1 (.1) Potri.009G143500 [exp] 392 / 1e-131 AT1G19250 400 / 2e-134 flavin-dependent monooxygenase 1 (.1) Potri.018G115800 [exp] 378 / 6e-126 AT1G19250 374 / 4e-124 flavin-dependent monooxygenase 1 (.1) Potri.006G060200 [exp] 376 / 3e-125 AT1G19250 378 / 5e-126 flavin-dependent monooxygenase 1 (.1) Potri.005G250600 [exp] 331 / 1e-107 AT1G19250 330 / 4e-107 flavin-dependent monooxygenase 1 (.1) Potri.006G060300 [exp] 285 / 1e-91 AT1G19250 285 / 3e-91 flavin-dependent monooxygenase 1 (.1) Potri.012G067500 [exp] 85 / 2e-17 AT5G07800 696 / 0.0 Flavin-binding monooxygenase family protein (.1) Potri.010G062400 [exp] 80 / 9e-16 AT1G04610 657 / 0.0 YUCCA 3 (.1) Potri.002G254200 [exp] 77 / 8e-15 AT4G28720 694 / 0.0 YUCCA 8, Flavin-binding monooxygenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00743 [flax] [poplar] FMO-like Flavin-binding monooxygenase-like
Representative CDS sequence Show only first row Show all	>Lus10038126 pacid=23163906 polypeptide=Lus10038126 locus=Lus10038126.g ID=Lus10038126.BGIv1.0 annot-version=v1.0 ATGGCTAGCCAAAAGGGAAACACATCATCATGCAATAAAGTAGGAATCATAGGAGCTGGGGTGAGCGGGCTGGCTGCTTCGAAACAGCTAGCTCACTACC ACCCTACGGTCTTTGAGGCCACCGATTCACTGGGAGGAGTATGGAAAACCTGTTCCTACAGTTCCACAAAGCTCCAATCCCCACGCAGCCAGTATGAGTT TTCGGATTTCCCTTGGCCCAACAGGGATGACCCTGCCTTCCCATCTCACCTCGAGATTTTGGATTACTTAACGTCTTACGCTCAACGATTTGATCTCTTT AAGTATGTCAAGTTTAACACCAAGGTTGTCCAGATCAGGTTTATCGGTGATGATCCAACAACTGCCTCCGGTGACCTTCTTACTGGACAACCCGTCTGGG AGGTCGCAGTCCGAACCGGCGAGTCTGACACCATTCAGTGGCATCAATTTGAAATGCTGGTTGTATGCACTGGAAGATACGGAGACGTACCGAAATTACC AGAATATCTGAGGAATAGAGGCCCGGAAATATTCAAGGGAAAGGTGATGCACTCCATGGATTACTGCAAACTGGATAAGGAAGAAGCAACGGAGCTAATG AGAGGGAAAAATGTTGCAATCATTGGGTTCAGAAAATCTGCTATCGATTTAGCTCTTGAATGCGCTCAAGCAAACCAAGGTCCAGAAGGGAAGCCATGCA CAATGGTGATAAGAACACTACACTGGACCGTCCCACATTACTGGGTATGGGGATTGCCATTTTTCTTATTCTTTTCGACCAGATCCTCCCAATTCATCAA TCAAAGACCCAATCAAAACCTTCTCAGGACCTTCATCTGCATCCTCTGTTCTCCACTGAGACATGCAATTTCTGCCTTCATAGAATCCTACTTGCTTCAC AAGCTTCCACTGGAGAAATATGGTTTGAGGCCTCAGCATCCTTTTATTGAAGACTATGCGTCTTGCCAGATGGCGATCACCCCTGAAGAATTCTTCGCAG AGGCAGAAAAGGGGAATATCATGTTCAAGAAATCATCAGCATCAAAATGGTGGTTTTCGAGTGACGGACTCGAGTTTGATGACAAAACCAACCTGAAGGC TGATGTTGTCATCTTGGCAACTGGGTATGATGGCAAAAAGAAGCTCAAAGATATCATTCCAGAACCCTTTCGTAGCTTCCTCGACTACCATTCTGGTTTC ATGCCCTTATACAGAGGAACGATAAACCCACTGATACCAAACATGGGTTTTCTTGGATACGTAGAGAGTGTTTCCAACCTTCAGACTGCAGAGCTGCGTA GCATATGGCTGGCACGGCTAGCTGACAAGAAGTTCAAACTCCCAACAGTGACGAAGATGTGCGACCAAATATCTGAAGAGATCGAAACCATGAAGAAGAC AACAAGGTTTTACAAAAGGCAGTGCATTTCCACTTTCAGCATCAACCACAGTGATGAGATATGTGAAGAAATGGGATGGAGCTCATGGAGAAAGAAACAT TTTCTAGCCGAGGCATTGAGCCCTTACGGCAGTGAGGATTACAAACAGCAATGA
AA sequence Show only first row Show all	>Lus10038126 pacid=23163906 polypeptide=Lus10038126 locus=Lus10038126.g ID=Lus10038126.BGIv1.0 annot-version=v1.0 MASQKGNTSSCNKVGIIGAGVSGLAASKQLAHYHPTVFEATDSLGGVWKTCSYSSTKLQSPRSQYEFSDFPWPNRDDPAFPSHLEILDYLTSYAQRFDLF KYVKFNTKVVQIRFIGDDPTTASGDLLTGQPVWEVAVRTGESDTIQWHQFEMLVVCTGRYGDVPKLPEYLRNRGPEIFKGKVMHSMDYCKLDKEEATELM RGKNVAIIGFRKSAIDLALECAQANQGPEGKPCTMVIRTLHWTVPHYWVWGLPFFLFFSTRSSQFINQRPNQNLLRTFICILCSPLRHAISAFIESYLLH KLPLEKYGLRPQHPFIEDYASCQMAITPEEFFAEAEKGNIMFKKSSASKWWFSSDGLEFDDKTNLKADVVILATGYDGKKKLKDIIPEPFRSFLDYHSGF MPLYRGTINPLIPNMGFLGYVESVSNLQTAELRSIWLARLADKKFKLPTVTKMCDQISEEIETMKKTTRFYKRQCISTFSINHSDEICEEMGWSSWRKKH FLAEALSPYGSEDYKQQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G19250		FMO1	flavin-dependent monooxygenase...		Lus10038126 [exp]	0	1
AT3G29000			Calcium-binding EF-hand family...		Lus10034463 [exp]	3.3	0.8400
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10006923 [exp]	3.6	0.8154
AT1G69930		ATGSTU11	glutathione S-transferase TAU ...		Lus10029518 [exp]	4.5	0.7979
AT5G22380	NAC	ANAC090	NAC domain containing protein ...		Lus10020643 [exp]	9.1	0.8253
AT5G23510			unknown protein		Lus10029154 [exp]	10.0	0.8207
AT3G29000			Calcium-binding EF-hand family...		Lus10019090 [exp]	12.6	0.8189
AT5G04885			Glycosyl hydrolase family prot...		Lus10019385 [exp]	14.5	0.8245
AT2G14560		LURP1	LATE UPREGULATED IN RESPONSE T...		Lus10009095 [exp]	16.2	0.8166
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Lus10021142 [exp]	21.1	0.8204
AT2G20840			Secretory carrier membrane pro...		Lus10031627 [exp]	22.3	0.8037

Compare expression of checked genes

Lus10038126 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.