Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33240 1379 / 0 FAB1A FORMS APLOID AND BINUCLEATE CELLS 1A, 1-phosphatidylinositol-4-phosphate 5-kinases;zinc ion binding;1-phosphatidylinositol-3-phosphate 5-kinases (.1.2.3) AT3G14270 1376 / 0 FAB1B FORMS APLOID AND BINUCLEATE CELLS 1B, phosphatidylinositol-4-phosphate 5-kinase family protein (.1) AT1G71010 592 / 0 FAB1C FORMS APLOID AND BINUCLEATE CELLS 1C (.1) AT1G34260 332 / 7e-93 FAB1D FORMS APLOID AND BINUCLEATE CELLS 1A (.1) AT1G10900 74 / 7e-13 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) AT1G77740 74 / 8e-13 PIP5K2 phosphatidylinositol-4-phosphate 5-kinase 2 (.1) AT1G60890 72 / 3e-12 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) AT1G21980 71 / 6e-12 ATPIPK1, ATPIP5K1 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) AT3G09920 70 / 1e-11 PIP5K9 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) AT1G20110 68 / 4e-11 RING/FYVE/PHD zinc finger superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005176 [exp] 1295 / 0 AT4G33240 1046 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1A, 1-phosphatidylinositol-4-phosphate 5-kinases;zinc ion binding;1-phosphatidylinositol-3-phosphate 5-kinases (.1.2.3) Lus10038129 [exp] 1285 / 0 AT3G14270 1144 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1B, phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Lus10005173 [exp] 1253 / 0 AT4G33240 1063 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1A, 1-phosphatidylinositol-4-phosphate 5-kinases;zinc ion binding;1-phosphatidylinositol-3-phosphate 5-kinases (.1.2.3) Lus10035998 [exp] 464 / 1e-136 AT1G71010 1660 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1C (.1) Lus10016702 [exp] 456 / 4e-134 AT1G71010 1149 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1C (.1) Lus10028710 [exp] 378 / 4e-108 AT1G34260 1186 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1A (.1) Lus10006051 [exp] 370 / 2e-105 AT1G34260 1175 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1A (.1) Lus10017853 [exp] 74 / 7e-13 AT5G26360 1041 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10034682 [exp] 74 / 7e-13 AT5G26360 1016 / 0.0 TCP-1/cpn60 chaperonin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G072300 [exp] 1452 / 0 AT3G14270 2157 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1B, phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Potri.001G163200 [exp] 1068 / 0 AT3G14270 2134 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1B, phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Potri.008G128800 [exp] 479 / 7e-142 AT1G71010 1714 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1C (.1) Potri.010G113700 [exp] 476 / 6e-141 AT1G71010 1728 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1C (.1) Potri.019G087000 [exp] 403 / 6e-116 AT1G34260 1190 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1A (.1) Potri.013G116400 [exp] 400 / 5e-115 AT1G34260 1184 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1A (.1) Potri.T046300 [exp] 77 / 6e-14 AT5G26360 1030 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.018G138200 [exp] 76 / 1e-13 AT5G26360 1029 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.004G133800 [exp] 76 / 1e-13 AT5G26360 1028 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.003G019100 [exp] 76 / 3e-13 AT1G60890 1004 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF01504 [flax] [poplar] PIP5K Phosphatidylinositol-4-phosphate 5-Kinase CL0390 [flax] [poplar] zf-FYVE-PHD PF01363 [flax] [poplar] FYVE FYVE zinc finger CL0390 [flax] [poplar] PF00118 [flax] [poplar] Cpn60_TCP1 TCP-1/cpn60 chaperonin family
Representative CDS sequence Show only first row Show all	>Lus10038127 pacid=23163911 polypeptide=Lus10038127 locus=Lus10038127.g ID=Lus10038127.BGIv1.0 annot-version=v1.0 ATGGGCTCCCCCCACGACAGACTCCCTGATTTTGTCCGAACAGTTAAATCCTTGATTTCTGGGAGGAGTGACCCTACAGATCTGTCTAGGGATTTTTGGA TGCCTGATCAGAGCTGTAGGGTATGCTACGATTGTGATTCTCAGTTCACCGTATTTAACAGAAGACATCACTGCCGAGTCTGTGGCCGGATTTTTTGTGC TAAGTGTACGTCAAATGCAGTTATCCACCCGTCTGATAAGCAAAAGACTTCTTGTGAAGACAAAGAGAGAGTGAGGGTCTGTAATTATTGCTTCAAGCAA TATGAGGGTAATTGTTTAGCTATTGATAATGAGTCTAATGTGGCTGCTCCAGGCCTCAATTCATCACCTCCAGTTTTGGCCAACAGCAGTTCTAGCTCTA CCTGTAACAGTAGTAGCAGGACAGTTGGATCAGGTCCATGTTCAACTGGGCCATACCATAGTTCTTCTCTTAGTCCTCAGAAGGCTGCACCAATGGATGC AGCAACTGTTGAGCAAGAAACTGAGGAATACAGTATAGACCCTTCCAGAGCTGCATTTCATCCTTCTTCCACCCAGAATGCATATTGCATGAACAGCATG GTGGTGAAAGGAGTTGTTTGCAAAAAGAATGTCGCCCACCGGAGAATGATGGCAAAAATAAATAAACCGCGTTTTCTAATCCTTAGCGGTGCTTTGGAGT ATCAGCGAGTTCCTAACCTTCTGTCAAGTGTTGATACGTTGCTTCAGCAGGAAAAGGATCATTTGAAGATGGCAGTTGCAAAGATTGAAGCTCACCACCC TAATGTTCTTTTAGTAGAGAAGTCGGTGTCCCGATTTGCTCAGGAATGCCTTCTTGTGAAGGATATTTCACTGGTCCTGAACATTAAGAAACCACTTTTG GATCGTATAGCCCGCTGCACTGGTGCACAAATAGTACCTTCAGTTGATCATCTCACGACTCAGAAGACGGGACACTGTGATTCATTCCATGTGGAGAAAT TTTTCGAGGAGCATGGTAGCGCTGGCCAAGGAGGAAAGAAGTTGACCAAGACTCTCATGTATTTTGAGGGTTGCCCAAGACCTTTTGGTTGCACTATTTT GTTGAAAGGTGCCAGTGGGGATGAATTGAAAAAAGTAAAACATGTTGTACAGTATGGAGTTTTCGCAGCTTATCACCTAGCTCTGGAGACATCTTTTCTG GCCGATGAGGGTGCGACACTGCCAGAGCTTCCTTTGAGCTCTCCACTGACTGTGGCACTACCTGATAAATCAAGTATGGATAGATCCATTTCTGCTATAC CTGGTTTTGTAGTTTTGGGTGCTGAAAAGCCTGTGAGTCCTCAGACACCAGTTGAACGTGCGAAGTCTGATATTGAGGCAGGGGACCTAAAGAAATCCGA GAATTGCATCACGGCTGATACAGCATCTTCTGCTATTGATAAACCTGCTTGTGCAAAAGAAGATGGTCATTTGAATTCGTTGTCTGAATATCATCCTTGT CAAATAGTGTCCCAAAATGTTGGGCTAAATGGAAATGAAGTTCCTCATTTGAGTTTAACTTCTCCATCTTTAATTGGGGATAACTTGTTGGATTCTCACA GTGGCATACACCCAACAAATTTTCTCTCAGGGATGTCCTTTGGAAATGATTCTAAAGACACTATGTCGGGTGGGGAAGAGGATGTTAATAATGCTGCCAC TGATATCCTCTTAGCACTTTCAGGATTGCCTCAACAAGAAGTTGTCAGTAGCCTCGCTAACAATGATCTCTTGCCTGCTAATGGTTATATTACCCAAGGA TCCTTTAACAAAGATGGTATTGATCAGAATGAGGATGTTGGTCCCTCAAAAGAGGATTTCCCTCCATCACCTTCAGATCACCAGAGCATTCTGGTGTCAG CATCAACACGATGTGTTTGGAAGGGGACTGTATGTGAAAGGGCCCATCTTTGCCGGATTAAGTACTATGGGAGCTTTGATAGGCCTCTCGGAAGTTTCTT ACGAGATCAGCTGTTTGATCAGAACTATCAATGCCATTCTTGTGAGATGCCATCAGAAGCACATGTTCACTGCTATACTCACCGACAAGGAAGCCTTACC ATATCAGTTCGGAAGCTGCCTGAATTTCTTTTACCTGGAGAGAGAGAGGGGAAAATCTGGATGTGGCATAGGTGTCTTCGATGTCCTCGGATTAATGGTT TCCCACCTGCTACTCGCAGAGTGGTTATGTCTGATGCTGCCTGGGGCTTATCTTTTGGTAAGTTCTTAGAGCTTAGCTTTTCAAATCATGCAGCAGCAAG CAGGGTTGCTAGCTGCGGTCACTCTCTACACAGAGATTGTCTTCGATTCTACGGTTTTGGGAGAATGGTTGCATGCTTCCGGTATGCTTCAATTAATGTT AACTCCGTTTGTCTGCCACCTTCAAAGCTTGAATTCAACTATGATGGTCAGGAGTGGATTCAGACAGAAGCAAACGAGGTACGACAAATGGCAGAACAAC TGTTTTCTGAAGTTGGGGCTGCCTTCCGTAAGGTTTTGGAGAAGGCTTCATCTGCTGGGTTAGATGATGATAGTGTCAGGGCATCGTCAAGACTTCACAG TTTGGAGATGGAGCAAGATCTTCTGAAGGAGAAAGAAGAATTTGAGAAAATATTGACGAGGCAGGCTAATGTTGGCCAATCTGCTGATATCCTTGACCTT AACAGGTTAAGGAGGCAGATACTTTGTCATTCTTATGTTTGGGATCAATGGTTAATTAATCTAGCTAGTTCCAGTATACTTAATGTTCAGGAAAGCCTGA TGAATTCCATTCCAGAATTAAATGGGAAACGCATTGCATCTGTTGAGAAGCTGAGTGAGGTGCACTCTTCAGACCCTGGTAAAGGCTTTAGCAAATCAGA TCTGCATGTTCAAGCAAAGATGCCAGAGAAAATTATAAACCATGAGATTGGTGTTAAAAACGATAATATTGATGCGGAGCTTAGTCAATGTCCCTCGAAA GAAAATGGCAGTTCTTATACGAGGGAGCAAACGGACCCCCATCATCCGCGCATTCTAATACGGAGGGTTCATTCAGAGGGTGAGTTTCCTGTTGCAGAAA ATTTGTCTGATACTCTTGATGCAGCATGGTCCGGCAAAAATCTTCAGACTAGTTTGACGTTGAATAGTTGCTCTCTGCTGAATTCAGCTGGGGAAAGTAC CGTGGCTTCAAGTTTGGACTCAGAAAGTTCCTCTAATGAGGATGCTGGAACAGGTGAAGTTCATTCCCTGGGCTCTGTAGCATCTGCAAATGGTGCTCAC TTCAGGTATAAGCCAATCACTGGAATAGGGATGCCACTTCCAGATTTTAACACTTCTTTTGATAGGAGTCCTTGCATTCCTAAAAATCTTATTCTTAACG AGTACAATCCAGTTTACATTCCACTTTTGAAGGAAGTGGAACAGCAAAGTGGCGCTAGGCTGCTTCTGCCTGTTGGAGTTAATGATACAGTTGTGCCTAT ATATGACGACGAGCCAACAAGCATTGTAGCATATGCTCTAGTCTCATTGGCTTATCAGGCCCAAATTTATGAGCCTGAAGCCCCAAAAGATGCTGGGGAC TCGATTCCTCAACATTTGGATTCTGTAAATCCTCTCTCTCGGTCATTTGATGACTCTATTTCTGATACCCTTAAGAGTATTGGATCAATGGACGAGAGTA TCCTATCATTGACTAGTTCCAGAAGTTCTCTGGTTTCGGACCTTGTTTCTCACACGAAGGATTTGCATGCCAGAATTTCTTTCAATGCCGAGGGACCACT TGGTAAAGTGAAGTATACAGTAACATGTTATTATGCAAAGCGGTTTGAGGCTTTGAAAAACATCTGTTGCCCTCGTGATTTAGACTTTGTAAGATCTCTT AGTCGTTGTAAGAAGTGGGGAGCCCAGGGTGGCAAGAGCAATGTCTTCTTTGCTAAAACTCTGGACGATCGGTTTATCATCAAGCAAGTTACGAAGACAG AGCTGGAGTCATTCATTAAGTTTGGACCTTCATATTTCAAGTACTTAACGGAATCAATTATTACCCGAAGCCCAACATGCTTGGCAAAGATCCTTGGAAT ATATCAGGTCTCAAAGCAGGTTAAAGGAGGAAAAGAAACCAAGATGGATATACTAGTGATGGAGAATCTTCTATTCCGGCGAGATGTGACTCGACTTTAT GACCTCAAAGGATCATCTCGGTCTCGTTATAATGCAGATACAAGCGGGAGCAACAAGGTTTTGCTGGACCAAAATTTGATCGAAGCGATGCCAACATCTC CAATTTTTGTAGGGAACAAGGCAAAGCGGTTACTAGAGAGAGCCGTGTGGAATGATACTGCGTTTCTTGCCTCGATTGATGTAATGGACTACTCTCTACT GGTTGGAGTGGACGAAGGAAAACACGAGCTGGTGCTTGGAATCATCGATTTCATGAGACAGTATACATGGGACAAGCATCTGGAGACTTGGGTGAAGGCT TCGGGAATCCTTGGCGGGTCGAAGAACTCGATGCCAACTGTGATATCTCCCCAGCAGTACAAGAAACGGTTTAGGAAAGCCATGACTGCGTATTTTGTTA TGGTTCCTGATCAGTGGTCTCCGACGACAATGATTGTACCCAGTGGCACCCAATCCGATGCTGCTTTTGATGAAAACAGCTTGCAAACCCACAGTGCTTC CATCGATTAA
AA sequence Show only first row Show all	>Lus10038127 pacid=23163911 polypeptide=Lus10038127 locus=Lus10038127.g ID=Lus10038127.BGIv1.0 annot-version=v1.0 MGSPHDRLPDFVRTVKSLISGRSDPTDLSRDFWMPDQSCRVCYDCDSQFTVFNRRHHCRVCGRIFCAKCTSNAVIHPSDKQKTSCEDKERVRVCNYCFKQ YEGNCLAIDNESNVAAPGLNSSPPVLANSSSSSTCNSSSRTVGSGPCSTGPYHSSSLSPQKAAPMDAATVEQETEEYSIDPSRAAFHPSSTQNAYCMNSM VVKGVVCKKNVAHRRMMAKINKPRFLILSGALEYQRVPNLLSSVDTLLQQEKDHLKMAVAKIEAHHPNVLLVEKSVSRFAQECLLVKDISLVLNIKKPLL DRIARCTGAQIVPSVDHLTTQKTGHCDSFHVEKFFEEHGSAGQGGKKLTKTLMYFEGCPRPFGCTILLKGASGDELKKVKHVVQYGVFAAYHLALETSFL ADEGATLPELPLSSPLTVALPDKSSMDRSISAIPGFVVLGAEKPVSPQTPVERAKSDIEAGDLKKSENCITADTASSAIDKPACAKEDGHLNSLSEYHPC QIVSQNVGLNGNEVPHLSLTSPSLIGDNLLDSHSGIHPTNFLSGMSFGNDSKDTMSGGEEDVNNAATDILLALSGLPQQEVVSSLANNDLLPANGYITQG SFNKDGIDQNEDVGPSKEDFPPSPSDHQSILVSASTRCVWKGTVCERAHLCRIKYYGSFDRPLGSFLRDQLFDQNYQCHSCEMPSEAHVHCYTHRQGSLT ISVRKLPEFLLPGEREGKIWMWHRCLRCPRINGFPPATRRVVMSDAAWGLSFGKFLELSFSNHAAASRVASCGHSLHRDCLRFYGFGRMVACFRYASINV NSVCLPPSKLEFNYDGQEWIQTEANEVRQMAEQLFSEVGAAFRKVLEKASSAGLDDDSVRASSRLHSLEMEQDLLKEKEEFEKILTRQANVGQSADILDL NRLRRQILCHSYVWDQWLINLASSSILNVQESLMNSIPELNGKRIASVEKLSEVHSSDPGKGFSKSDLHVQAKMPEKIINHEIGVKNDNIDAELSQCPSK ENGSSYTREQTDPHHPRILIRRVHSEGEFPVAENLSDTLDAAWSGKNLQTSLTLNSCSLLNSAGESTVASSLDSESSSNEDAGTGEVHSLGSVASANGAH FRYKPITGIGMPLPDFNTSFDRSPCIPKNLILNEYNPVYIPLLKEVEQQSGARLLLPVGVNDTVVPIYDDEPTSIVAYALVSLAYQAQIYEPEAPKDAGD SIPQHLDSVNPLSRSFDDSISDTLKSIGSMDESILSLTSSRSSLVSDLVSHTKDLHARISFNAEGPLGKVKYTVTCYYAKRFEALKNICCPRDLDFVRSL SRCKKWGAQGGKSNVFFAKTLDDRFIIKQVTKTELESFIKFGPSYFKYLTESIITRSPTCLAKILGIYQVSKQVKGGKETKMDILVMENLLFRRDVTRLY DLKGSSRSRYNADTSGSNKVLLDQNLIEAMPTSPIFVGNKAKRLLERAVWNDTAFLASIDVMDYSLLVGVDEGKHELVLGIIDFMRQYTWDKHLETWVKA SGILGGSKNSMPTVISPQQYKKRFRKAMTAYFVMVPDQWSPTTMIVPSGTQSDAAFDENSLQTHSASID

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33240		FAB1A	FORMS APLOID AND BINUCLEATE CE...		Lus10038127 [exp]	0	1
AT4G33240		FAB1A	FORMS APLOID AND BINUCLEATE CE...		Lus10005173 [exp]	1.0	0.9438
AT1G71240			Plant protein of unknown funct...		Lus10002408 [exp]	1.7	0.9233
AT5G64220	CAMTA		Calmodulin-binding transcripti...		Lus10036162 [exp]	2.2	0.9147
AT3G19190		ATATG2	autophagy 2 (.1)		Lus10019868 [exp]	3.5	0.9265
AT4G29380		AtVPS15	Arabidopsis thaliana vacuolar ...		Lus10011134 [exp]	4.0	0.9171
AT4G29380		AtVPS15	Arabidopsis thaliana vacuolar ...		Lus10043037 [exp]	7.9	0.9013
AT5G36930			Disease resistance protein (TI...		Lus10011741 [exp]	8.5	0.9052
AT2G28320			Pleckstrin homology (PH) and l...		Lus10016094 [exp]	9.0	0.8499
AT5G20490		XI-17, ATXIK, X...	MYOSIN XI-17, MYOSIN XI K, Myo...		Lus10003315 [exp]	9.8	0.9044
AT3G05090		LRS1	LATERAL ROOT STIMULATOR 1, Tra...		Lus10001717 [exp]	10.6	0.9046

Compare expression of checked genes

Lus10038127 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.