Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20690 446 / 6e-153 Leucine-rich repeat protein kinase family protein (.1) AT3G42880 423 / 3e-144 Leucine-rich repeat protein kinase family protein (.1) AT4G31250 270 / 2e-84 Leucine-rich repeat protein kinase family protein (.1) AT1G72460 260 / 4e-81 Leucine-rich repeat protein kinase family protein (.1) AT3G20190 251 / 2e-77 Leucine-rich repeat protein kinase family protein (.1) AT5G35390 250 / 3e-77 Leucine-rich repeat protein kinase family protein (.1) AT2G07040 241 / 9e-74 ATPRK2A Leucine-rich repeat protein kinase family protein (.1) AT1G50610 241 / 2e-73 Leucine-rich repeat protein kinase family protein (.1) AT5G16590 227 / 1e-68 LRR1 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1) AT2G36570 224 / 4e-67 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005175 [exp] 563 / 0 AT5G20690 417 / 1e-138 Leucine-rich repeat protein kinase family protein (.1) Lus10037688 [exp] 347 / 2e-117 AT3G42880 337 / 2e-110 Leucine-rich repeat protein kinase family protein (.1) Lus10015678 [exp] 349 / 2e-115 AT1G72460 466 / 7e-157 Leucine-rich repeat protein kinase family protein (.1) Lus10013165 [exp] 335 / 1e-109 AT5G20690 470 / 5e-158 Leucine-rich repeat protein kinase family protein (.1) Lus10008128 [exp] 292 / 6e-94 AT1G72460 412 / 8e-137 Leucine-rich repeat protein kinase family protein (.1) Lus10027597 [exp] 262 / 5e-81 AT5G35390 603 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035710 [exp] 255 / 2e-80 AT3G20190 509 / 3e-175 Leucine-rich repeat protein kinase family protein (.1) Lus10022946 [exp] 259 / 3e-80 AT5G35390 593 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037297 [exp] 244 / 3e-78 AT3G20190 420 / 3e-143 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G139700 [exp] 491 / 4e-171 AT3G42880 611 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G166300 [exp] 374 / 5e-124 AT3G42880 513 / 6e-174 Leucine-rich repeat protein kinase family protein (.1) Potri.003G068800 [exp] 357 / 2e-118 AT3G42880 471 / 6e-159 Leucine-rich repeat protein kinase family protein (.1) Potri.006G279300 [exp] 271 / 2e-85 AT4G31250 570 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.018G002600 [exp] 266 / 2e-83 AT3G20190 540 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G078600 [exp] 262 / 2e-81 AT5G35390 660 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.018G147300 [exp] 261 / 1e-80 AT5G35390 629 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.007G002000 [exp] 259 / 1e-80 AT3G20190 437 / 4e-145 Leucine-rich repeat protein kinase family protein (.1) Potri.004G170274 [exp] 248 / 4e-79 AT3G20190 408 / 1e-137 Leucine-rich repeat protein kinase family protein (.1) Potri.014G002700 [exp] 255 / 5e-79 AT3G20190 415 / 1e-136 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10038128 pacid=23163637 polypeptide=Lus10038128 locus=Lus10038128.g ID=Lus10038128.BGIv1.0 annot-version=v1.0 ATGGTCGTTATTACCGTTTTGTCCTCGCGGAAGAAAACAGGGGATGAGGAATTCACTGTGCTGGAAAAGGAGAATCTAAACAAGCATGAGGCAGTGATCA TGCCGGTGAGCTTGCCTAGTTCTGGGAAGAAGTCCTCGTCGTCGTCCACGGATTCAAGCCGGAAGGGGGGAGGGGGACCAGGAAAGAGGGCGGCGGCGGC GGCGGCGGCGGCTGCAGCTGGGAGGAATGGGATGGGGGACCTTATAATGATAAACAATGACAAGGGACCGTTTGGATTGCCGGACCTGATGAAGGCGGCG GCAGAGGTGTTGGGAAACGGCGGACTGGGGTCGGCCTACAAGGCGACGATGCCAACAGTGAAGTTGTCTGTAGTTGTGAAGAGGATAAGAGAGATGAATA TGCTTGGGAGAGATTTGTTCGACGCTGAGATGAGGCGATTTGGTAGGATTCGCCATAACAACATCTTAACTCCATTGGCTTATCATTTCAGGAAAGAAGA GAAACTCCTTGTCTCTGAATACATGCCCAAAGGCAGCTTATTGTATCTCATGCACGGTGATCGGGGAATCTGCCACTCAGATCTAAATTGGAAAACGAGG CTAAAAATAATAAAAGGAATAACCAACGGGTTAAGTTTCCTACACTCAGAATATGCATCGTACAACCTCCCTCACGGCAACCTCAAGTCAAGCAATGTCC TTCTAAGCGATACATACGAGCCACGTCTTGGTGACTACGCACTCGACCCGCTTGTGAACCCGACCCATGCCTCGCAGGCCATGTTCGCATATAAATCCCC AGAGTACACCCTGTACAGCCAAGTATCTCACAAGTCGGATGTCTACTGTTTAGGGATTATAATACTGGAAGTGATGACTGGGAAATTCCCGTCCCAATAT CTAACAAATGGGAAAGGCGGTACGGATGTGGTGCAATGGGCTGTTGAGGCCAGTCGGGAAGGGAGGGAAAAGGAAGTCATAGACCCGGAGATGGTCAACA GCGGAGCAAACTCCCTTGAGAATATGGTTCAGCTACTGCAGGTCGGCGTGGCTTGCATCGAGACGGATCCCACCCAACGGTTAGATATGGGTGAAGCTAT TAGACGGATAGATGAGATTCAAGTTTAA
AA sequence Show only first row Show all	>Lus10038128 pacid=23163637 polypeptide=Lus10038128 locus=Lus10038128.g ID=Lus10038128.BGIv1.0 annot-version=v1.0 MVVITVLSSRKKTGDEEFTVLEKENLNKHEAVIMPVSLPSSGKKSSSSSTDSSRKGGGGPGKRAAAAAAAAAAGRNGMGDLIMINNDKGPFGLPDLMKAA AEVLGNGGLGSAYKATMPTVKLSVVVKRIREMNMLGRDLFDAEMRRFGRIRHNNILTPLAYHFRKEEKLLVSEYMPKGSLLYLMHGDRGICHSDLNWKTR LKIIKGITNGLSFLHSEYASYNLPHGNLKSSNVLLSDTYEPRLGDYALDPLVNPTHASQAMFAYKSPEYTLYSQVSHKSDVYCLGIIILEVMTGKFPSQY LTNGKGGTDVVQWAVEASREGREKEVIDPEMVNSGANSLENMVQLLQVGVACIETDPTQRLDMGEAIRRIDEIQV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20690			Leucine-rich repeat protein ki...		Lus10038128 [exp]	0	1
AT2G19130			S-locus lectin protein kinase ...		Lus10004283 [exp]	27.0	0.5927
AT2G31880		SOBIR1, EVR	SUPPRESSOR OF BIR1 1, EVERSHED...		Lus10013675 [exp]	30.1	0.5899
AT2G34790		MEE23, EDA28	MATERNAL EFFECT EMBRYO ARREST ...		Lus10018119 [exp]	31.6	0.5270
AT1G73830	bHLH	bHLH050, BEE3	BR enhanced expression 3 (.1.2...		Lus10009034 [exp]	33.6	0.5557
AT2G39980			HXXXD-type acyl-transferase fa...		Lus10028267 [exp]	37.3	0.5734
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10027146 [exp]	37.8	0.5715
AT2G25270			unknown protein		Lus10014341 [exp]	63.4	0.5293
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10017883 [exp]	80.3	0.5326
AT3G04580		EIN4	ETHYLENE INSENSITIVE 4, Signal...		Lus10005517 [exp]	84.3	0.5262
AT1G68320	MYB	BW62C, BW62B, A...	myb domain protein 62 (.1)		Lus10041435 [exp]	246.5	0.4466

Compare expression of checked genes

Lus10038128 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.