Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14270 1082 / 0 FAB1B FORMS APLOID AND BINUCLEATE CELLS 1B, phosphatidylinositol-4-phosphate 5-kinase family protein (.1) AT4G33240 708 / 0 FAB1A FORMS APLOID AND BINUCLEATE CELLS 1A, 1-phosphatidylinositol-4-phosphate 5-kinases;zinc ion binding;1-phosphatidylinositol-3-phosphate 5-kinases (.1.2.3) AT1G71010 686 / 0 FAB1C FORMS APLOID AND BINUCLEATE CELLS 1C (.1) AT1G34260 324 / 3e-90 FAB1D FORMS APLOID AND BINUCLEATE CELLS 1A (.1) AT5G26360 80 / 7e-15 TCP-1/cpn60 chaperonin family protein (.1) AT1G77740 74 / 9e-13 PIP5K2 phosphatidylinositol-4-phosphate 5-kinase 2 (.1) AT1G10900 74 / 9e-13 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) AT1G60890 72 / 3e-12 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) AT1G21980 71 / 7e-12 ATPIPK1, ATPIP5K1 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) AT3G09920 69 / 2e-11 PIP5K9 phosphatidyl inositol monophosphate 5 kinase (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005173 [exp] 1958 / 0 AT4G33240 1063 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1A, 1-phosphatidylinositol-4-phosphate 5-kinases;zinc ion binding;1-phosphatidylinositol-3-phosphate 5-kinases (.1.2.3) Lus10005176 [exp] 1848 / 0 AT4G33240 1046 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1A, 1-phosphatidylinositol-4-phosphate 5-kinases;zinc ion binding;1-phosphatidylinositol-3-phosphate 5-kinases (.1.2.3) Lus10038127 [exp] 1299 / 0 AT4G33240 1429 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1A, 1-phosphatidylinositol-4-phosphate 5-kinases;zinc ion binding;1-phosphatidylinositol-3-phosphate 5-kinases (.1.2.3) Lus10035998 [exp] 459 / 8e-135 AT1G71010 1660 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1C (.1) Lus10016702 [exp] 452 / 3e-132 AT1G71010 1149 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1C (.1) Lus10028710 [exp] 447 / 7e-132 AT1G34260 1186 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1A (.1) Lus10006051 [exp] 370 / 3e-105 AT1G34260 1175 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1A (.1) Lus10017853 [exp] 85 / 2e-16 AT5G26360 1041 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10034682 [exp] 85 / 2e-16 AT5G26360 1016 / 0.0 TCP-1/cpn60 chaperonin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G072300 [exp] 1155 / 0 AT3G14270 2157 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1B, phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Potri.001G163200 [exp] 739 / 0 AT3G14270 2134 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1B, phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Potri.013G116400 [exp] 487 / 9e-145 AT1G34260 1184 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1A (.1) Potri.008G128800 [exp] 476 / 1e-140 AT1G71010 1714 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1C (.1) Potri.010G113700 [exp] 475 / 5e-140 AT1G71010 1728 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1C (.1) Potri.019G087000 [exp] 469 / 2e-138 AT1G34260 1190 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1A (.1) Potri.T046300 [exp] 90 / 5e-18 AT5G26360 1030 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.018G138200 [exp] 89 / 9e-18 AT5G26360 1029 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.004G133800 [exp] 87 / 4e-17 AT5G26360 1028 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.003G019100 [exp] 75 / 3e-13 AT1G60890 1004 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF01504 [flax] [poplar] PIP5K Phosphatidylinositol-4-phosphate 5-Kinase CL0390 [flax] [poplar] zf-FYVE-PHD PF01363 [flax] [poplar] FYVE FYVE zinc finger CL0390 [flax] [poplar] PF00118 [flax] [poplar] Cpn60_TCP1 TCP-1/cpn60 chaperonin family
Representative CDS sequence Show only first row Show all	>Lus10038129 pacid=23163815 polypeptide=Lus10038129 locus=Lus10038129.g ID=Lus10038129.BGIv1.0 annot-version=v1.0 ATGGGCTCCCCCCACGACAGGCTCCCTGATTTTGTTCGAAAAGTTAAATCCTTGATTTCTGGGAGGAGTGACCCTACAGATCTGTCTAGGGATTTTTGGA TGCCTGATCAGAGCTGTAGGGTATGCTACGATTGTGATTCTCAGTTCACCGTATTTAACAGAAGACATCACTGCCGAGTCTGTGGCCGGATTTTTTGTGC TAAGTGTACGTCAAATGCAGTTATCCACCCGTCTGATAAGCAAAAGACTTCTTGTGAAGACAAAGAGAGAGTGAGGGTCTGTAATTATTGCTTTAAGCAA TATGAGGGTAATGGTTTAGCTATTGATAATGAGTCTAATGTGGCTGCTCCAGGCCTCAATTCATCACCTTCACCGATATTGGCCGACAGCAGTTCTAGCT CTATCTGTAACAGTAGTAGCAGCACAGTTGGATCAGGTCCATATTCAACTGGGCCATACCTCTGTGTGTCGCATAGTTCTTGTCTTAGTCCTCAGAAGGC TGCACCAATGGATGCAGCAACTGTTGAGCAAGAAACTGAGGAATACAGAGGTAGTATAGACCCCTCCAGAGCTGCATTTCATTCTTCTTCCACCCAGAAT GCATATTGCATGAACAGCGGGCCAAGTGATGATGATGACGATGATGATGATTGCTATGGTATCTACGATGCAGGCTTGCAGGCGAGGCATTTCTCTTATG TTGATAAATATTGTGGGTCTGCATCTGTTCATGACTTCGACCATGAATGTGGGATACATGATGTACATGACAGAGGAGGCCTTGTTGATGATCAAATTGT AAGTTTCTCACCATTAACAGAGGATTTTAATTCAAAGAGTTTGGATGGAATCGAGGGTACTGCAGAAGCTGAATCTTATGGTGATGATTGTGATGCTACT CCATATGACGTGGAGAATGAAGATAATGAGCCTGTTGATTTTGAGAACAACGGTCTTCTTTGGGTACCTCCTGAACCAGAAGATGAAGAGGATGAAAGGG AAACTCCTTTGTTTGATGATGATGAAGATGAAGAAGATGATGGGACTACAGGTGAGTGGGGATATTTACGTCCTTCCAATAGCTTTGGGAGCGGGGAACT CAGGAGCAAGGAAAAATCAAGCGAGGAGCACAGGAATGCTATGAAGAATGTGGTGGAAGGACACTTTAGAGCTTTAGTTGCACAGCTCTTACAAGTTGAA AACCTCCCAATTGGTGTGGATGATGATAATGCCGGTTGGCTGGATATAATTACTAATCTGTCATGGGAAGCAGCTAGTCATCTTAAACCAGATACAAGCA ATGGCGGTGGAATGGATCCTGGTGGATATGTGAAGGTCAAGTGCCTAGCTTGTGGGAGTCGCACTGAAAGCATGGTGGTGAAAGGAGTTGTTTGCAAAAA GAATGTTGCCCATCGGAGAATGATGTCAAAAATAAATAAACCTCGTTTTCTAATCCTTAGCGGTGCTTTAGAGTATCAGCGAGTTCCTAACCTTCTGTCA AGTGTTGATACGTTGCTTCAGCAGGAAAAGGATCATTTGAAGATGGCAGTTGCAAAGATTGAAGCTCATCACCCTAATGTTCTTTTAGTAGAGAAGTCAG TGTCCCGATTTGCTCAGGAATGCCTTCTTGTGAAGGACATTTCACTGGTCCTAAACATTAAGAAACCACTTTTGGATCGTATAGCCCGCTGCACTGGTGC ACAAATAGTACCTTCAGTTGATCATCTCACGACTCAGAAGACGGGACACTGTGATTCATTCCATGTGGAGAAATTTTTCGAGGAGCATGGTAGCGCTGGC CAAGGAGGAAAGAAGTTGACCAAGACTCTAATGTATTTTGAGGGTTGCCCAAGACCTTTTGGTTGCACTATTTTGTTGAAAGGTGCCAGTGGGGATGAAT TGAAAAAAGTAAAACATGTGGTACAGTATGGAGTTTTCGCAGCTTATCACCTAGCTCTGGAGACATCTTTCCTGGCAGATGAGGGAGCGACACTGCCAGA ACTTCCTTTGAGGTCTCCACTGACTGTGGCACTACCTGATAAATCAAGTATGGATAGATCCATTTCTGCTATACCTGGTTTCATAGTTTTGGGTGCTGAA AAGCCTGTGAGTCCTCAGACACCTGTTGAACTTGTGAAGTCTGATATTGGGGCAGGGGACCTAAAGAAATCCGAGAATTGCATCACGGCTGATACAGCAT CTTCTGCTATTGATAAACCTGCTTGTGCAGAAGAAGATGGTCATTCGAATTCGTTGTCTGAAAATCATCCTTGTCAAACAGTGTCCCAAAATGTTGGGCT AAATGGAAATGAATCTCCTTATTTGAGTTCAATTTCTCCAACTTTAATTGGGGATAATTTGTTGGATTCTCACATTGACATACACCCAAGGAATAATATC TCAGGGCTGTCCTATGGAAATGATTCTAAAGACACTGTGTTGGGTGAGGAAGAGGATGTTAATACTTCTGCCACTGATATCCTCTTAGCATTTTCAGGAT TGCCTCAACCACAAGAATTTGTCAGTAGCCACGCTAACAATGATCTCTTGCCTGCTAATGGTTATATGACCCATGGGTCCTTCAACAAAGATGGTATAGA TCAGAATGAGGATATTGGTCCCTCAAAAGAGGATTTCCCTCCATCACCTTCAGATCACCAGAGCATTCTGGTGTCATCATCAACACGATGTGTTTGGAAG GGGACTGTATGTGAAAGGGCCCATCTCTGCCGGATTAAGTACTATGGGAGCTTTGATAGGCCTCTTGGAAGTTTCTTACGAGATCAGCTGTTTGATCAGA ACTATGAATGCCGTTCTTGTGAGATGCCATCAGAAGCACATGTTCACTGCTATATTCACCAACAAGGAAGCCTTACCATATCAGTTCGGAAGCTGCCCGA ATTTCTTTTAACTGGGGAGAGAGAAGGGAAAATCTGGATGTGGCATAGGTGTCTTCGTTGTCCTCGGATTAATGGCTTCCCACCTGCTACTCGTAGAGTG GTTATGTCTGACGCTGCCTGGGGCTTATCTTTTGGTAAGTTTTTAGAGCTTAGCTTTTCAAATCATGCAGCAGCAAGCAGGGTTGCGAGCTGTGGTCACT CTCTACACAGAGATTGTCTTCGATTCTATGGTTTTGGGAGAATGGTTGCTTGCTTCCGGTATGCTTCAATTAATGTTAACTCTGTTTGTCTGCCACCTTC AAAGCTTGAATTCAACTTTGATAGTCAGGAGTGGATTCAGACAGAAGCAAATGAGGTAAGACAAATGGCAGAACTTCTGTTTTCTGAAGTTGGGGCTGCT TTCCGTAAGATTTTGGAGAAGGCTTCATCTGCTGGGTTAGATGATGATAGTGTCAAGGCATCATCAAGACTTCACAGTTTGGAGTTGGAGCAAGCATTAC TGAAAGAAAAAGCAGAATTTGAGTACGATCCTCAACATTACTTGTACTTTACAGGTTCACAGAGGTATAAGCCAATCACTGGAATAGGGATGCCACTTCC AAATTTTAACACTTCTTTTGATGGGAGTCCTTCCATTCCTAAAAATCTTATTCTAAACGAGTACGATCCAGTTTATATTCCACTTTTGAAGGAAGTGGAA CAGCAAAGTGGCGCTAGGCTGTTTCTGCCTGTTGGAGTTAATGATACAGTTGTGCCGATATATGATGACGAGCCAACAAGCATTGTAGCATATGCTCTAG TCTCATCGGCTTATCAGGCCCAAATTTATGAGCCTGAAACCACAAAAAATGCAGGGGACTCGATGCCTCAACATTTGAATTCTGTAAATCCTCTCTCTCA GTCATTTGATGACTCTATTTCTGATACCCTTAAAAGTATTGGATCAATGGACGAGAGTATCCTATCATTGACTAGTTCTAAAAGTTCTCTGGTTTCAGAC CTAGTTTCTCACACGAAGGATTTGCATGCCAGAATTTCTTTCAATGCTGAGGGACCACTTGGTAAGGTGAAGTATACAGTAACATGTTACTACGCAAAGA GGTTTGAGGCTTTGAAAAACATCTGTTGCCCTCGTGATTTAGACTTTGTAAGATCTCTTAGTCGTTGTAAGAAGTGGGGAGCCCAGGGTGGCAAGAGCAA CGTCTTCTTTGCTAAAACTCTGGACGATCGGTTTATCATCAAGCAAGTTACAAAAACAGAGCTGGAGTCATTCATCAAGTTTGGACCTTCATATTTCAAG TACTTAACGGAATCAATTATTACCCGAAGCCCAACATGCTTGGCAAAGATCCTTGGAATATATCAGGTCTCAAAGCAGGTTAAAGGAGGAAAAGAAACCA AGATGGATATTCTAGTGATGGAGAATCTTCTATTCCGTCGAGATGTGTCTCGACTTTATGACCTCAAAGGATCATCTCGGTCTCGTTATAATGCAGATAC AAGCGGGAGCAACAAGGTTTTGCTGGACCAAAATTTGATCGAAGCGATGCCAACATCTCCAATTTTTGTAGGGAACAAGGCAAAGCGGTTACTAGAGAGA GCCGTGTGGAATGATACTGCGTTTCTTGCCTCGATCGATGTAATGGACTACTCTCTACTGGTTGGAGTGGACGAGGGGAAACACGAGTTGGTGCTTGGAA TCATTGATTTCATGAGACAGTATACGTGGGACAAGCATTTGGAGACTTGGGTGAAGGCTTCAGGGATCCTTGGCGGGTCGAAGAACTCGATGCCAACTGT GATATCTCCCCAGCAGTACAAGAAACGGTTTAGGAAAGCTATGACTGCTTATTTTGTTATGGTTCCTGATCATTGGTCTCCGACTACGATGATTGTACCC AGTGGCACCCAATCCGATGCTGCTTTTGATGAAAATAGCTTGCAAGCCCAATCTTTATAA
AA sequence Show only first row Show all	>Lus10038129 pacid=23163815 polypeptide=Lus10038129 locus=Lus10038129.g ID=Lus10038129.BGIv1.0 annot-version=v1.0 MGSPHDRLPDFVRKVKSLISGRSDPTDLSRDFWMPDQSCRVCYDCDSQFTVFNRRHHCRVCGRIFCAKCTSNAVIHPSDKQKTSCEDKERVRVCNYCFKQ YEGNGLAIDNESNVAAPGLNSSPSPILADSSSSSICNSSSSTVGSGPYSTGPYLCVSHSSCLSPQKAAPMDAATVEQETEEYRGSIDPSRAAFHSSSTQN AYCMNSGPSDDDDDDDDCYGIYDAGLQARHFSYVDKYCGSASVHDFDHECGIHDVHDRGGLVDDQIVSFSPLTEDFNSKSLDGIEGTAEAESYGDDCDAT PYDVENEDNEPVDFENNGLLWVPPEPEDEEDERETPLFDDDEDEEDDGTTGEWGYLRPSNSFGSGELRSKEKSSEEHRNAMKNVVEGHFRALVAQLLQVE NLPIGVDDDNAGWLDIITNLSWEAASHLKPDTSNGGGMDPGGYVKVKCLACGSRTESMVVKGVVCKKNVAHRRMMSKINKPRFLILSGALEYQRVPNLLS SVDTLLQQEKDHLKMAVAKIEAHHPNVLLVEKSVSRFAQECLLVKDISLVLNIKKPLLDRIARCTGAQIVPSVDHLTTQKTGHCDSFHVEKFFEEHGSAG QGGKKLTKTLMYFEGCPRPFGCTILLKGASGDELKKVKHVVQYGVFAAYHLALETSFLADEGATLPELPLRSPLTVALPDKSSMDRSISAIPGFIVLGAE KPVSPQTPVELVKSDIGAGDLKKSENCITADTASSAIDKPACAEEDGHSNSLSENHPCQTVSQNVGLNGNESPYLSSISPTLIGDNLLDSHIDIHPRNNI SGLSYGNDSKDTVLGEEEDVNTSATDILLAFSGLPQPQEFVSSHANNDLLPANGYMTHGSFNKDGIDQNEDIGPSKEDFPPSPSDHQSILVSSSTRCVWK GTVCERAHLCRIKYYGSFDRPLGSFLRDQLFDQNYECRSCEMPSEAHVHCYIHQQGSLTISVRKLPEFLLTGEREGKIWMWHRCLRCPRINGFPPATRRV VMSDAAWGLSFGKFLELSFSNHAAASRVASCGHSLHRDCLRFYGFGRMVACFRYASINVNSVCLPPSKLEFNFDSQEWIQTEANEVRQMAELLFSEVGAA FRKILEKASSAGLDDDSVKASSRLHSLELEQALLKEKAEFEYDPQHYLYFTGSQRYKPITGIGMPLPNFNTSFDGSPSIPKNLILNEYDPVYIPLLKEVE QQSGARLFLPVGVNDTVVPIYDDEPTSIVAYALVSSAYQAQIYEPETTKNAGDSMPQHLNSVNPLSQSFDDSISDTLKSIGSMDESILSLTSSKSSLVSD LVSHTKDLHARISFNAEGPLGKVKYTVTCYYAKRFEALKNICCPRDLDFVRSLSRCKKWGAQGGKSNVFFAKTLDDRFIIKQVTKTELESFIKFGPSYFK YLTESIITRSPTCLAKILGIYQVSKQVKGGKETKMDILVMENLLFRRDVSRLYDLKGSSRSRYNADTSGSNKVLLDQNLIEAMPTSPIFVGNKAKRLLER AVWNDTAFLASIDVMDYSLLVGVDEGKHELVLGIIDFMRQYTWDKHLETWVKASGILGGSKNSMPTVISPQQYKKRFRKAMTAYFVMVPDHWSPTTMIVP SGTQSDAAFDENSLQAQSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14270		FAB1B	FORMS APLOID AND BINUCLEATE CE...		Lus10038129 [exp]	0	1
AT4G33240		FAB1A	FORMS APLOID AND BINUCLEATE CE...		Lus10005176 [exp]	1.0	0.9268
AT3G62900			CW-type Zinc Finger (.1)		Lus10040919 [exp]	2.4	0.9158
AT1G22730			MA3 domain-containing protein ...		Lus10012204 [exp]	4.8	0.8533
AT4G24520		AR1, ATR1	ARABIDOPSIS CYTOCHROME REDUCTA...		Lus10032842 [exp]	4.9	0.8799
AT3G62900			CW-type Zinc Finger (.1)		Lus10009815 [exp]	5.7	0.9129
AT4G33240		FAB1A	FORMS APLOID AND BINUCLEATE CE...		Lus10005173 [exp]	7.7	0.8880
AT4G30790			unknown protein		Lus10007700 [exp]	12.6	0.8306
AT3G48195			Phox (PX) domain-containing pr...		Lus10042108 [exp]	13.6	0.8414
AT1G79000		ATHAC1, ATHPCAT...	ARABIDOPSIS THALIANA P300/CBP ...		Lus10033319 [exp]	15.6	0.8770
AT2G25730			unknown protein		Lus10007687 [exp]	17.1	0.8806

Compare expression of checked genes

Lus10038129 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.